Guide to the Human Genome
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Search of human proteins with 239755750

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239755750 PREDICTED: hypothetical protein XP_002344682 [Homo
sapiens]
         (123 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239755750 PREDICTED: hypothetical protein XP_002344682 [Homo ...   273   2e-74
gi|239744561 PREDICTED: hypothetical protein XP_002343188 [Homo ...   271   7e-74
gi|239755771 PREDICTED: hypothetical protein [Homo sapiens]           265   9e-72
gi|239755024 PREDICTED: hypothetical protein [Homo sapiens]            31   0.27 
gi|239749542 PREDICTED: hypothetical protein [Homo sapiens]            31   0.27 
gi|239743694 PREDICTED: hypothetical protein XP_002342927 [Homo ...    31   0.27 
gi|22538426 TRAF3 interacting protein 2 isoform 1 [Homo sapiens]       30   0.60 
gi|22538428 TRAF3 interacting protein 2 isoform 2 [Homo sapiens]       30   0.60 
gi|154426306 kinesin family member 24 [Homo sapiens]                   29   0.79 
gi|122937496 WAS/WASL interacting protein family, member 3 [Homo...    29   1.0  
gi|50233814 zinc finger CCCH-type containing 14 isoform 3 [Homo ...    28   1.3  
gi|40804742 zinc finger CCCH-type containing 14 isoform 1 [Homo ...    28   1.3  
gi|239756829 PREDICTED: zinc finger protein 385C [Homo sapiens]        28   1.8  
gi|239756584 PREDICTED: hypothetical protein [Homo sapiens]            28   1.8  
gi|239751322 PREDICTED: zinc finger protein 385C [Homo sapiens]        28   1.8  
gi|239751076 PREDICTED: hypothetical protein [Homo sapiens]            28   1.8  
gi|239745821 PREDICTED: zinc finger protein 385C [Homo sapiens]        28   1.8  
gi|239745563 PREDICTED: hypothetical protein [Homo sapiens]            28   1.8  
gi|224177469 SET domain, bifurcated 1 isoform 2 [Homo sapiens]         28   2.3  
gi|224177467 SET domain, bifurcated 1 isoform 1 [Homo sapiens]         28   2.3  
gi|130979214 adrenocortical dysplasia homolog isoform 3 [Homo sa...    27   3.0  
gi|169173209 PREDICTED: hypothetical protein [Homo sapiens]            27   3.9  
gi|169172420 PREDICTED: UPF0607 protein ENSP00000382826-like [Ho...    27   3.9  
gi|169172709 PREDICTED: UPF0607 protein ENSP00000382826-like [Ho...    27   3.9  
gi|238624195 hypothetical protein LOC221545 isoform 3 [Homo sapi...    27   3.9  
gi|158262031 hypothetical protein LOC221545 isoform 1 [Homo sapi...    27   3.9  
gi|89886447 nitric oxide synthase trafficker isoform 2 [Homo sap...    27   3.9  
gi|16418431 nitric oxide synthase trafficker isoform 1 [Homo sap...    27   3.9  
gi|23510437 tumor necrosis factor receptor superfamily, member 8...    27   5.1  
gi|68348711 tumor necrosis factor receptor superfamily, member 8...    27   5.1  

>gi|239755750 PREDICTED: hypothetical protein XP_002344682 [Homo
           sapiens]
          Length = 123

 Score =  273 bits (698), Expect = 2e-74
 Identities = 123/123 (100%), Positives = 123/123 (100%)

Query: 1   MPQWMPQLPQPPVETKQEAWLSAMQDGKKDSIPGGELPWNAPRTARTHCSFRIPAFSPTG 60
           MPQWMPQLPQPPVETKQEAWLSAMQDGKKDSIPGGELPWNAPRTARTHCSFRIPAFSPTG
Sbjct: 1   MPQWMPQLPQPPVETKQEAWLSAMQDGKKDSIPGGELPWNAPRTARTHCSFRIPAFSPTG 60

Query: 61  ANACAWVLAALWTPHSPPGFHLCNRIPADHAHDKHCLQRAGQRKGTAPGGGVVAHQEEAD 120
           ANACAWVLAALWTPHSPPGFHLCNRIPADHAHDKHCLQRAGQRKGTAPGGGVVAHQEEAD
Sbjct: 61  ANACAWVLAALWTPHSPPGFHLCNRIPADHAHDKHCLQRAGQRKGTAPGGGVVAHQEEAD 120

Query: 121 FSR 123
           FSR
Sbjct: 121 FSR 123


>gi|239744561 PREDICTED: hypothetical protein XP_002343188 [Homo
           sapiens]
          Length = 123

 Score =  271 bits (694), Expect = 7e-74
 Identities = 122/123 (99%), Positives = 123/123 (100%)

Query: 1   MPQWMPQLPQPPVETKQEAWLSAMQDGKKDSIPGGELPWNAPRTARTHCSFRIPAFSPTG 60
           MPQWMPQLPQPPVETK+EAWLSAMQDGKKDSIPGGELPWNAPRTARTHCSFRIPAFSPTG
Sbjct: 1   MPQWMPQLPQPPVETKREAWLSAMQDGKKDSIPGGELPWNAPRTARTHCSFRIPAFSPTG 60

Query: 61  ANACAWVLAALWTPHSPPGFHLCNRIPADHAHDKHCLQRAGQRKGTAPGGGVVAHQEEAD 120
           ANACAWVLAALWTPHSPPGFHLCNRIPADHAHDKHCLQRAGQRKGTAPGGGVVAHQEEAD
Sbjct: 61  ANACAWVLAALWTPHSPPGFHLCNRIPADHAHDKHCLQRAGQRKGTAPGGGVVAHQEEAD 120

Query: 121 FSR 123
           FSR
Sbjct: 121 FSR 123


>gi|239755771 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 164

 Score =  265 bits (676), Expect = 9e-72
 Identities = 118/123 (95%), Positives = 120/123 (97%)

Query: 1   MPQWMPQLPQPPVETKQEAWLSAMQDGKKDSIPGGELPWNAPRTARTHCSFRIPAFSPTG 60
           MPQWMPQLPQPP ET++EAWLSAMQDGKKDSIPGGELPWNAPRTARTHCSFRIP FSPTG
Sbjct: 42  MPQWMPQLPQPPAETRKEAWLSAMQDGKKDSIPGGELPWNAPRTARTHCSFRIPPFSPTG 101

Query: 61  ANACAWVLAALWTPHSPPGFHLCNRIPADHAHDKHCLQRAGQRKGTAPGGGVVAHQEEAD 120
           ANACAWVLAALWTPHSPPGFHLCNRIPADHAHDKHCLQRAGQRKGTAPG GVVAHQEEAD
Sbjct: 102 ANACAWVLAALWTPHSPPGFHLCNRIPADHAHDKHCLQRAGQRKGTAPGSGVVAHQEEAD 161

Query: 121 FSR 123
           FSR
Sbjct: 162 FSR 164


>gi|239755024 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 136

 Score = 30.8 bits (68), Expect = 0.27
 Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 24  MQDGKKDSIPGGELPWNAPRTARTHCSFRIPAFSPTGANACAWVLAALWTPHSPPGFHLC 83
           +Q  +K  +  G++    P  AR   +       PTG  A AW+     +  S P  H  
Sbjct: 31  LQPARKKMVSSGQVGRRLPIHARDSAAGARGLGEPTGGRASAWLQLQPPSLRSSPLMH-- 88

Query: 84  NRIPADHAHDKHCLQRAGQRKGTAPGG 110
              PA  A  +      G+R GT PGG
Sbjct: 89  ---PARRAAGRGSTVSRGRRAGT-PGG 111


>gi|239749542 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 136

 Score = 30.8 bits (68), Expect = 0.27
 Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 24  MQDGKKDSIPGGELPWNAPRTARTHCSFRIPAFSPTGANACAWVLAALWTPHSPPGFHLC 83
           +Q  +K  +  G++    P  AR   +       PTG  A AW+     +  S P  H  
Sbjct: 31  LQPARKKMVSSGQVGRRLPIHARDSAAGARGPGEPTGGRASAWLQLQPPSLRSSPLMH-- 88

Query: 84  NRIPADHAHDKHCLQRAGQRKGTAPGG 110
              PA  A  +      G+R GT PGG
Sbjct: 89  ---PARRAAGRGSTVSRGRRAGT-PGG 111


>gi|239743694 PREDICTED: hypothetical protein XP_002342927 [Homo
           sapiens]
          Length = 136

 Score = 30.8 bits (68), Expect = 0.27
 Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 24  MQDGKKDSIPGGELPWNAPRTARTHCSFRIPAFSPTGANACAWVLAALWTPHSPPGFHLC 83
           +Q  +K  +  G++    P  AR   +       PTG  A AW+     +  S P  H  
Sbjct: 31  LQPARKKMVSSGQVGRRLPIHARDSAAGARGPGEPTGGRASAWLQLQPPSLRSSPLMH-- 88

Query: 84  NRIPADHAHDKHCLQRAGQRKGTAPGG 110
              PA  A  +      G+R GT PGG
Sbjct: 89  ---PARRAAGRGSTVSRGRRAGT-PGG 111


>gi|22538426 TRAF3 interacting protein 2 isoform 1 [Homo sapiens]
          Length = 574

 Score = 29.6 bits (65), Expect = 0.60
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 9/71 (12%)

Query: 38  PWNAPRTARTHCSFRIPAFSPTGANACAWVLAALWTPHSPPGFHL-C-----NRIPADHA 91
           P + PR  R+      P F P    ACA +L    +PH+P  +H  C     +++P  H 
Sbjct: 233 PQDLPRPLRSR---EFPQFEPQRYPACAQMLPPNLSPHAPWNYHYHCPGSPDHQVPYGHD 289

Query: 92  HDKHCLQRAGQ 102
           + +   Q+  Q
Sbjct: 290 YPRAAYQQVIQ 300


>gi|22538428 TRAF3 interacting protein 2 isoform 2 [Homo sapiens]
          Length = 565

 Score = 29.6 bits (65), Expect = 0.60
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 9/71 (12%)

Query: 38  PWNAPRTARTHCSFRIPAFSPTGANACAWVLAALWTPHSPPGFHL-C-----NRIPADHA 91
           P + PR  R+      P F P    ACA +L    +PH+P  +H  C     +++P  H 
Sbjct: 224 PQDLPRPLRSR---EFPQFEPQRYPACAQMLPPNLSPHAPWNYHYHCPGSPDHQVPYGHD 280

Query: 92  HDKHCLQRAGQ 102
           + +   Q+  Q
Sbjct: 281 YPRAAYQQVIQ 291


>gi|154426306 kinesin family member 24 [Homo sapiens]
          Length = 1368

 Score = 29.3 bits (64), Expect = 0.79
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 11   PPVETKQEAWLSAMQDGKKDSIPGGELPWNAPRTARTHCSFRIPAFSPTGANAC 64
            P     +  WLS+      D+ PGG+LP  +P   R H + ++P+       AC
Sbjct: 1104 PVSSATRHLWLSS---SPPDNKPGGDLPALSPSPIRQHPADKLPSREADLGEAC 1154


>gi|122937496 WAS/WASL interacting protein family, member 3 [Homo
           sapiens]
          Length = 483

 Score = 28.9 bits (63), Expect = 1.0
 Identities = 23/77 (29%), Positives = 29/77 (37%), Gaps = 11/77 (14%)

Query: 8   LPQPPVETKQEAWLSAMQDGKKDSIPGGELPWNAPRTARTHCSFRIPAFSPTGANACAWV 67
           LP PP     + +L   + G+  +  G   P  AP           PA SPT   +    
Sbjct: 345 LPAPPAPPGSQPFLQKKRHGRPGAGGGKLNPPPAP-----------PARSPTTELSSKSQ 393

Query: 68  LAALWTPHSPPGFHLCN 84
            A  WTP   PG  L N
Sbjct: 394 QATAWTPTQQPGGQLRN 410


>gi|50233814 zinc finger CCCH-type containing 14 isoform 3 [Homo
           sapiens]
          Length = 571

 Score = 28.5 bits (62), Expect = 1.3
 Identities = 19/57 (33%), Positives = 22/57 (38%), Gaps = 17/57 (29%)

Query: 47  THCSFRIPAFSPTGANACAWVLAALWTPHSPPG-------FHLCNRIPADHAHDKHC 96
           TH S RIP  SP  A A          P +PP        F  C ++     H KHC
Sbjct: 490 THVSRRIPVLSPKPAVA----------PPAPPSSSQLCRYFPACKKMECPFYHPKHC 536


>gi|40804742 zinc finger CCCH-type containing 14 isoform 1 [Homo
           sapiens]
          Length = 736

 Score = 28.5 bits (62), Expect = 1.3
 Identities = 19/57 (33%), Positives = 22/57 (38%), Gaps = 17/57 (29%)

Query: 47  THCSFRIPAFSPTGANACAWVLAALWTPHSPPG-------FHLCNRIPADHAHDKHC 96
           TH S RIP  SP  A A          P +PP        F  C ++     H KHC
Sbjct: 655 THVSRRIPVLSPKPAVA----------PPAPPSSSQLCRYFPACKKMECPFYHPKHC 701


>gi|239756829 PREDICTED: zinc finger protein 385C [Homo sapiens]
          Length = 1082

 Score = 28.1 bits (61), Expect = 1.8
 Identities = 26/92 (28%), Positives = 35/92 (38%), Gaps = 3/92 (3%)

Query: 13  VETKQEAWLSAMQDGKKDSIPGGELPWNAPRTARTHC-SFRIPAFSPTGANACAWVLAAL 71
           V   + AWLS+    ++    G +L    P  A  HC   R     P        +L AL
Sbjct: 261 VSAPKLAWLSSSLPSERLGSVGPQLRATCPLLAELHCLPGRTDPEPPAYLGQYESILDAL 320

Query: 72  WTPHSPPGFHLCNRIPADHAHDKHCLQRAGQR 103
           +  H  P  HL   + A  A D   +  AG R
Sbjct: 321 FRLHGGPSSHLVPELRA--ALDLAAIDLAGPR 350


>gi|239756584 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 349

 Score = 28.1 bits (61), Expect = 1.8
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 3/33 (9%)

Query: 10  QPPVETKQEAWLSAMQDGKKDSIPGGELPWNAP 42
           +PP+E + +AW      GK+DS    +  WN P
Sbjct: 99  KPPIEVEDDAWGIKKMTGKEDS---KDFLWNGP 128


>gi|239751322 PREDICTED: zinc finger protein 385C [Homo sapiens]
          Length = 1082

 Score = 28.1 bits (61), Expect = 1.8
 Identities = 26/92 (28%), Positives = 35/92 (38%), Gaps = 3/92 (3%)

Query: 13  VETKQEAWLSAMQDGKKDSIPGGELPWNAPRTARTHC-SFRIPAFSPTGANACAWVLAAL 71
           V   + AWLS+    ++    G +L    P  A  HC   R     P        +L AL
Sbjct: 261 VSAPKLAWLSSSLPSERLGSVGPQLRATCPLLAELHCLPGRTDPEPPAYLGQYESILDAL 320

Query: 72  WTPHSPPGFHLCNRIPADHAHDKHCLQRAGQR 103
           +  H  P  HL   + A  A D   +  AG R
Sbjct: 321 FRLHGGPSSHLVPELRA--ALDLAAIDLAGPR 350


>gi|239751076 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 349

 Score = 28.1 bits (61), Expect = 1.8
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 3/33 (9%)

Query: 10  QPPVETKQEAWLSAMQDGKKDSIPGGELPWNAP 42
           +PP+E + +AW      GK+DS    +  WN P
Sbjct: 99  KPPIEVEDDAWGIKKMTGKEDS---KDFLWNGP 128


>gi|239745821 PREDICTED: zinc finger protein 385C [Homo sapiens]
          Length = 1082

 Score = 28.1 bits (61), Expect = 1.8
 Identities = 26/92 (28%), Positives = 35/92 (38%), Gaps = 3/92 (3%)

Query: 13  VETKQEAWLSAMQDGKKDSIPGGELPWNAPRTARTHC-SFRIPAFSPTGANACAWVLAAL 71
           V   + AWLS+    ++    G +L    P  A  HC   R     P        +L AL
Sbjct: 261 VSAPKLAWLSSSLPSERLGSVGPQLRATCPLLAELHCLPGRTDPEPPAYLGQYESILDAL 320

Query: 72  WTPHSPPGFHLCNRIPADHAHDKHCLQRAGQR 103
           +  H  P  HL   + A  A D   +  AG R
Sbjct: 321 FRLHGGPSSHLVPELRA--ALDLAAIDLAGPR 350


>gi|239745563 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 349

 Score = 28.1 bits (61), Expect = 1.8
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 3/33 (9%)

Query: 10  QPPVETKQEAWLSAMQDGKKDSIPGGELPWNAP 42
           +PP+E + +AW      GK+DS    +  WN P
Sbjct: 99  KPPIEVEDDAWGIKKMTGKEDS---KDFLWNGP 128


>gi|224177469 SET domain, bifurcated 1 isoform 2 [Homo sapiens]
          Length = 1290

 Score = 27.7 bits (60), Expect = 2.3
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 57  SPTGANACAWVLAALWTPHSPPGFH-LCNRIPADHAH 92
           SP G+ A A   +AL  P +PP FH +  R PA+ ++
Sbjct: 528 SPLGSTASAPAPSALPAPPAPPVFHGMLERAPAEPSY 564


>gi|224177467 SET domain, bifurcated 1 isoform 1 [Homo sapiens]
          Length = 1291

 Score = 27.7 bits (60), Expect = 2.3
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 57  SPTGANACAWVLAALWTPHSPPGFH-LCNRIPADHAH 92
           SP G+ A A   +AL  P +PP FH +  R PA+ ++
Sbjct: 528 SPLGSTASAPAPSALPAPPAPPVFHGMLERAPAEPSY 564


>gi|130979214 adrenocortical dysplasia homolog isoform 3 [Homo
           sapiens]
          Length = 528

 Score = 27.3 bits (59), Expect = 3.0
 Identities = 13/35 (37%), Positives = 17/35 (48%)

Query: 54  PAFSPTGANACAWVLAALWTPHSPPGFHLCNRIPA 88
           P F  TGA   A    ++W  + PP   LC R+ A
Sbjct: 467 PPFPRTGATRGAQEPCSVWYEYEPPCTSLCARVQA 501


>gi|169173209 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 352

 Score = 26.9 bits (58), Expect = 3.9
 Identities = 10/29 (34%), Positives = 12/29 (41%)

Query: 64 CAWVLAALWTPHSPPGFHLCNRIPADHAH 92
          C+W     W  H  P   +C   PA  AH
Sbjct: 9  CSWSHRRSWPRHRQPARLVCEAFPAGRAH 37


>gi|169172420 PREDICTED: UPF0607 protein ENSP00000382826-like
          [Homo sapiens]
          Length = 352

 Score = 26.9 bits (58), Expect = 3.9
 Identities = 10/29 (34%), Positives = 12/29 (41%)

Query: 64 CAWVLAALWTPHSPPGFHLCNRIPADHAH 92
          C+W     W  H  P   +C   PA  AH
Sbjct: 9  CSWSHRRSWPRHRQPARLVCEAFPAGRAH 37


>gi|169172709 PREDICTED: UPF0607 protein ENSP00000382826-like
          [Homo sapiens]
          Length = 352

 Score = 26.9 bits (58), Expect = 3.9
 Identities = 10/29 (34%), Positives = 12/29 (41%)

Query: 64 CAWVLAALWTPHSPPGFHLCNRIPADHAH 92
          C+W     W  H  P   +C   PA  AH
Sbjct: 9  CSWSHRRSWPRHRQPARLVCEAFPAGRAH 37


>gi|238624195 hypothetical protein LOC221545 isoform 3 [Homo
           sapiens]
          Length = 496

 Score = 26.9 bits (58), Expect = 3.9
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)

Query: 1   MPQWMPQLPQPPVETKQEAWLSAMQDGKKDSIPGGEL 37
           +PQ +P LP P ++    AW+  +  GK +  PG EL
Sbjct: 246 LPQ-VPPLPLPQIQALSSAWV-VLPPGKGEEGPGPEL 280


>gi|158262031 hypothetical protein LOC221545 isoform 1 [Homo
          sapiens]
          Length = 315

 Score = 26.9 bits (58), Expect = 3.9
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)

Query: 1  MPQWMPQLPQPPVETKQEAWLSAMQDGKKDSIPGGEL 37
          +PQ +P LP P ++    AW+  +  GK +  PG EL
Sbjct: 65 LPQ-VPPLPLPQIQALSSAWV-VLPPGKGEEGPGPEL 99


>gi|89886447 nitric oxide synthase trafficker isoform 2 [Homo
           sapiens]
          Length = 506

 Score = 26.9 bits (58), Expect = 3.9
 Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 3/35 (8%)

Query: 14  ETKQEAWLSAMQDGKKDSIPGG---ELPWNAPRTA 45
           E K+E W     +GKK   P     ELP NA  TA
Sbjct: 469 EKKEEGWWFGSLNGKKGHFPAAYVEELPSNAGNTA 503


>gi|16418431 nitric oxide synthase trafficker isoform 1 [Homo
           sapiens]
          Length = 428

 Score = 26.9 bits (58), Expect = 3.9
 Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 3/35 (8%)

Query: 14  ETKQEAWLSAMQDGKKDSIPGG---ELPWNAPRTA 45
           E K+E W     +GKK   P     ELP NA  TA
Sbjct: 391 EKKEEGWWFGSLNGKKGHFPAAYVEELPSNAGNTA 425


>gi|23510437 tumor necrosis factor receptor superfamily, member 8
           isoform 2 [Homo sapiens]
          Length = 132

 Score = 26.6 bits (57), Expect = 5.1
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 2   PQWMPQLPQPPVETKQEAWLSAMQDGKKDSIP 33
           P +  Q  +PP+ +  +  LS  ++GK+D +P
Sbjct: 95  PHYPEQETEPPLGSCSDVMLSVEEEGKEDPLP 126


>gi|68348711 tumor necrosis factor receptor superfamily, member 8
           isoform 1 precursor [Homo sapiens]
          Length = 595

 Score = 26.6 bits (57), Expect = 5.1
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 2   PQWMPQLPQPPVETKQEAWLSAMQDGKKDSIP 33
           P +  Q  +PP+ +  +  LS  ++GK+D +P
Sbjct: 558 PHYPEQETEPPLGSCSDVMLSVEEEGKEDPLP 589


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.133    0.463 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,723,255
Number of Sequences: 37866
Number of extensions: 339048
Number of successful extensions: 832
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 806
Number of HSP's gapped (non-prelim): 51
length of query: 123
length of database: 18,247,518
effective HSP length: 89
effective length of query: 34
effective length of database: 14,877,444
effective search space: 505833096
effective search space used: 505833096
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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