Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100286917 Sequence: fasta or formatted (123aa) NCBI GI: 239744561
Description:

PREDICTED: hypothetical protein XP_002343188

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.0         16           2
 C cysteine            3.3          4           1
 D aspartate           4.1          5           1
 E glutamate           4.1          5           2
 F phenylalanine       3.3          4           1
 G glycine             8.1         10           3
 H histidine           5.7          7           1
 I isoleucine          2.4          3           1
 K lysine              4.1          5           2
 L leucine             5.7          7           1
 M methionine          2.4          3           1
 N asparagine          2.4          3           1
 P proline            12.2         15           2
 Q glutamine           5.7          7           1
 R arginine            6.5          8           1
 S serine              4.9          6           1
 T threonine           4.9          6           1
 V valine              3.3          4           2
 W tryptophan          4.1          5           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343188 
LOC100291641          0.992   PREDICTED: hypothetical protein XP_002344682 
LOC100293377          0.968   PREDICTED: hypothetical protein 
LOC100293695          0.024   PREDICTED: hypothetical protein 
LOC100288294          0.024   PREDICTED: hypothetical protein 
LOC100288294          0.024   PREDICTED: hypothetical protein XP_002342927 
KIF24                 0.024   kinesin family member 24 
TRAF3IP2              0.020   TRAF3 interacting protein 2 isoform 1 
TRAF3IP2              0.020   TRAF3 interacting protein 2 isoform 2 
ZC3H14                0.012   zinc finger CCCH-type containing 14 isoform 3 
ZC3H14                0.012   zinc finger CCCH-type containing 14 isoform 1 
ZNF385C               0.012   PREDICTED: zinc finger protein 385C 
ZNF385C               0.012   PREDICTED: zinc finger protein 385C 
ZNF385C               0.012   PREDICTED: zinc finger protein 385C 
WIPF3                 0.012   WAS/WASL interacting protein family, member 3 [Homo...
SETDB1                0.012   SET domain, bifurcated 1 isoform 2 
SETDB1                0.012   SET domain, bifurcated 1 isoform 1 
LOC100132339          0.008   PREDICTED: hypothetical protein 
LOC100132339          0.008   PREDICTED: hypothetical protein 
LOC100132339          0.008   PREDICTED: hypothetical protein 
MED13                 0.008   mediator complex subunit 13 
ACD                   0.008   adrenocortical dysplasia homolog isoform 3 
SORCS3                0.008   VPS10 domain receptor protein SORCS 3 
LOC100132229          0.008   PREDICTED: hypothetical protein 
LOC100132229          0.008   PREDICTED: UPF0607 protein ENSP00000382826-like [Ho...
LOC100132229          0.008   PREDICTED: UPF0607 protein ENSP00000382826-like [Ho...
HOXA9                 0.008   homeobox A9 
FUT10                 0.008   fucosyltransferase 10 
TNFRSF8               0.004   tumor necrosis factor receptor superfamily, member 8...
TNFRSF8               0.004   tumor necrosis factor receptor superfamily, member 8...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press