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Search of human proteins with 239755648
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239755648 PREDICTED: hypothetical protein [Homo sapiens]
(257 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755648 PREDICTED: hypothetical protein [Homo sapiens] 530 e-151
gi|33239445 eukaryotic translation initiation factor 3, subunit ... 36 0.038
gi|83367072 eukaryotic translation initiation factor 3, subunit ... 36 0.038
gi|150170670 piccolo isoform 2 [Homo sapiens] 34 0.14
gi|150378539 piccolo isoform 1 [Homo sapiens] 34 0.14
gi|157909822 pragmin [Homo sapiens] 33 0.32
gi|66912176 leucine rich repeat containing 66 [Homo sapiens] 33 0.32
gi|110349719 titin isoform N2-A [Homo sapiens] 32 0.42
gi|110349717 titin isoform novex-2 [Homo sapiens] 32 0.42
gi|110349713 titin isoform novex-1 [Homo sapiens] 32 0.42
gi|110349715 titin isoform N2-B [Homo sapiens] 32 0.42
gi|18643383 inositol 1,4,5-trisphosphate 3-kinase C [Homo sapiens] 32 0.42
gi|21704287 sialidase 4 [Homo sapiens] 32 0.54
gi|14277682 protocadherin gamma subfamily C, 4 isoform 2 precurs... 32 0.54
gi|11128025 protocadherin gamma subfamily C, 4 isoform 1 precurs... 32 0.54
gi|239752588 PREDICTED: hypothetical protein XP_002348309, parti... 32 0.71
gi|130492454 zinc finger RNA binding protein 2 isoform 1 [Homo s... 32 0.71
gi|134142809 E2F transcription factor 5 isoform 2 [Homo sapiens] 31 0.93
gi|134142811 E2F transcription factor 5 isoform 1 [Homo sapiens] 31 0.93
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 31 1.2
gi|153791244 hypothetical protein LOC55237 [Homo sapiens] 31 1.2
gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens] 31 1.2
gi|223646109 family with sequence similarity 157, member A [Homo... 30 1.6
gi|239745655 PREDICTED: family with sequence similarity 157, mem... 30 1.6
gi|239743047 PREDICTED: similar to family with sequence similari... 30 1.6
gi|223646111 family with sequence similarity 157, member B [Homo... 30 1.6
gi|169167813 PREDICTED: hypothetical protein [Homo sapiens] 30 2.1
gi|169167899 PREDICTED: hypothetical protein [Homo sapiens] 30 2.1
gi|169167609 PREDICTED: hypothetical protein [Homo sapiens] 30 2.1
gi|55741677 SET domain containing 1A [Homo sapiens] 30 2.1
>gi|239755648 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 530 bits (1365), Expect = e-151
Identities = 257/257 (100%), Positives = 257/257 (100%)
Query: 1 MEPTWTNYENQMTKDECESIKLITSKIPLLEIRTQTAFSCGRIGLEPPRLLRKRKNGQQQ 60
MEPTWTNYENQMTKDECESIKLITSKIPLLEIRTQTAFSCGRIGLEPPRLLRKRKNGQQQ
Sbjct: 1 MEPTWTNYENQMTKDECESIKLITSKIPLLEIRTQTAFSCGRIGLEPPRLLRKRKNGQQQ 60
Query: 61 PRGRPGSARPPAQPPECGADQRVTLLTGDPVSAAVSGSAFQDALQRVSSMECEWECDSSS 120
PRGRPGSARPPAQPPECGADQRVTLLTGDPVSAAVSGSAFQDALQRVSSMECEWECDSSS
Sbjct: 61 PRGRPGSARPPAQPPECGADQRVTLLTGDPVSAAVSGSAFQDALQRVSSMECEWECDSSS 120
Query: 121 VKGTCMGMEGTFSEWPPSALPLYGLAEPPAPTWTRQVGEESRVQQKAGVREQRIVTVDGV 180
VKGTCMGMEGTFSEWPPSALPLYGLAEPPAPTWTRQVGEESRVQQKAGVREQRIVTVDGV
Sbjct: 121 VKGTCMGMEGTFSEWPPSALPLYGLAEPPAPTWTRQVGEESRVQQKAGVREQRIVTVDGV 180
Query: 181 GRTAGIQEGPGHQTEKAQVSAAGSGEPARRPMLISRTGTLKPQSQPVQPSAGAENEWWRL 240
GRTAGIQEGPGHQTEKAQVSAAGSGEPARRPMLISRTGTLKPQSQPVQPSAGAENEWWRL
Sbjct: 181 GRTAGIQEGPGHQTEKAQVSAAGSGEPARRPMLISRTGTLKPQSQPVQPSAGAENEWWRL 240
Query: 241 YAFWNSPSLGLISSIPE 257
YAFWNSPSLGLISSIPE
Sbjct: 241 YAFWNSPSLGLISSIPE 257
>gi|33239445 eukaryotic translation initiation factor 3, subunit 9
eta, 116kDa [Homo sapiens]
Length = 814
Score = 35.8 bits (81), Expect = 0.038
Identities = 42/164 (25%), Positives = 64/164 (39%), Gaps = 23/164 (14%)
Query: 47 PPRLLRKRKNGQQQPRGRPGSARPPAQPPECGADQRV-TLLTGDPVSAAVSGSAFQDALQ 105
P + + GQQQP P A +P GA + T + + V A +G
Sbjct: 10 PEAAEERAEPGQQQPAAEPPPAEGLLRPAGPGAPEAAGTEASSEEVGIAEAGPE------ 63
Query: 106 RVSSMECEWECDSSSVKGTCMGMEGTFSEWPPSALPLYGL-AEPPAPTWTRQVGEESRVQ 164
S + E ++ + G + S PP+A L G AEPP P GE++R
Sbjct: 64 --SEVRTEPAAEAEAASGP------SESPSPPAAEELPGSHAEPPVPAQGEAPGEQAR-D 114
Query: 165 QKAGVREQRIVTVDGVGRTAGIQEGPGHQTEKAQVSAAGSGEPA 208
+++ R Q V AG EG + E + + EP+
Sbjct: 115 ERSDSRAQ------AVSEDAGGNEGRAAEAEPRALENGDADEPS 152
>gi|83367072 eukaryotic translation initiation factor 3, subunit 9
eta, 116kDa [Homo sapiens]
Length = 814
Score = 35.8 bits (81), Expect = 0.038
Identities = 42/164 (25%), Positives = 64/164 (39%), Gaps = 23/164 (14%)
Query: 47 PPRLLRKRKNGQQQPRGRPGSARPPAQPPECGADQRV-TLLTGDPVSAAVSGSAFQDALQ 105
P + + GQQQP P A +P GA + T + + V A +G
Sbjct: 10 PEAAEERAEPGQQQPAAEPPPAEGLLRPAGPGAPEAAGTEASSEEVGIAEAGPE------ 63
Query: 106 RVSSMECEWECDSSSVKGTCMGMEGTFSEWPPSALPLYGL-AEPPAPTWTRQVGEESRVQ 164
S + E ++ + G + S PP+A L G AEPP P GE++R
Sbjct: 64 --SEVRTEPAAEAEAASGP------SESPSPPAAEELPGSHAEPPVPAQGEAPGEQAR-D 114
Query: 165 QKAGVREQRIVTVDGVGRTAGIQEGPGHQTEKAQVSAAGSGEPA 208
+++ R Q V AG EG + E + + EP+
Sbjct: 115 ERSDSRAQ------AVSEDAGGNEGRAAEAEPRALENGDADEPS 152
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 33.9 bits (76), Expect = 0.14
Identities = 45/169 (26%), Positives = 66/169 (39%), Gaps = 37/169 (21%)
Query: 64 RPGSARPPAQPPECGADQRVTLLTGDPVSAAVSGSAFQDALQRVSSMECEWECDSSSVKG 123
+PG+ +PP QPP T P+ A + Q+ S + E
Sbjct: 345 QPGTVKPPVQPP------GTTKPPAQPLGPA------KPPAQQTGSEKPSSEQPGPKALA 392
Query: 124 TCMGMEGTFSEWPPSALPLYGLAEPPAPTWTRQVGEESRVQQKAGVREQRIVTVDGVGRT 183
G+ T ++ P G A+PP T+QVG + Q+ G+ Q G +T
Sbjct: 393 QPPGVGKTPAQQP-------GPAKPP----TQQVGTPKPLAQQPGL--QSPAKAPGPTKT 439
Query: 184 AGIQEGPGHQTEKAQVSAAGSGEPARRPMLISRTGTLKPQSQ---PVQP 229
Q GPG K AG G+ + + +TG KP SQ P +P
Sbjct: 440 PVQQPGPG----KIPAQQAGPGKTSAQ-----QTGPTKPPSQLPGPAKP 479
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 33.9 bits (76), Expect = 0.14
Identities = 45/169 (26%), Positives = 66/169 (39%), Gaps = 37/169 (21%)
Query: 64 RPGSARPPAQPPECGADQRVTLLTGDPVSAAVSGSAFQDALQRVSSMECEWECDSSSVKG 123
+PG+ +PP QPP T P+ A + Q+ S + E
Sbjct: 345 QPGTVKPPVQPP------GTTKPPAQPLGPA------KPPAQQTGSEKPSSEQPGPKALA 392
Query: 124 TCMGMEGTFSEWPPSALPLYGLAEPPAPTWTRQVGEESRVQQKAGVREQRIVTVDGVGRT 183
G+ T ++ P G A+PP T+QVG + Q+ G+ Q G +T
Sbjct: 393 QPPGVGKTPAQQP-------GPAKPP----TQQVGTPKPLAQQPGL--QSPAKAPGPTKT 439
Query: 184 AGIQEGPGHQTEKAQVSAAGSGEPARRPMLISRTGTLKPQSQ---PVQP 229
Q GPG K AG G+ + + +TG KP SQ P +P
Sbjct: 440 PVQQPGPG----KIPAQQAGPGKTSAQ-----QTGPTKPPSQLPGPAKP 479
>gi|157909822 pragmin [Homo sapiens]
Length = 1402
Score = 32.7 bits (73), Expect = 0.32
Identities = 37/188 (19%), Positives = 61/188 (32%), Gaps = 34/188 (18%)
Query: 63 GRPGSARPPAQPPECGADQRVTLLTGDPVSAAVSGSAFQDALQRVSSMECEWECDSSSVK 122
G G +PPA P E + + + AA S Q ++ ++ + + +
Sbjct: 390 GLTGEPQPPAHPREATQPEPIYAESTKRKKAAPVPSKSQAKIEHAAAAQGQGQ------- 442
Query: 123 GTCMGMEGTFSEWPPSALPLYGLAEPPAPTWTRQVGEESRVQQKAGVREQRIVTVDGVGR 182
C G + W A +G P T QV V + R + +
Sbjct: 443 -VCTG-----NAWAQKAASGWGRDSPDP---TPQVSATITVMAAHPEEDHRTIYLSSPDS 493
Query: 183 TAGIQ------------------EGPGHQTEKAQVSAAGSGEPARRPMLISRTGTLKPQS 224
G+Q G G + ++ +A +P RP + + P
Sbjct: 494 AVGVQWPRGPVSQNSEVGEEETSAGQGLSSRESHAHSASESKPKERPAIPPKLSKSSPVG 553
Query: 225 QPVQPSAG 232
PV PSAG
Sbjct: 554 SPVSPSAG 561
>gi|66912176 leucine rich repeat containing 66 [Homo sapiens]
Length = 880
Score = 32.7 bits (73), Expect = 0.32
Identities = 43/183 (23%), Positives = 60/183 (32%), Gaps = 35/183 (19%)
Query: 35 QTAFSCGRIGLEPPRLLRKRKNG------QQQPRGRPGSARPPAQPPECGADQRVTLLTG 88
Q + S + ++ PRL R + P G P P PP + VT
Sbjct: 625 QVSSSIDLLSIQQPRLSGARAEEALSAHYSEVPYGDPRDTGPSVFPPRWDSGLDVTPANK 684
Query: 89 DPVSAAVSGSAFQDALQRVSSMECEWECDSSSVKGTCMGMEGTFSEWPPSALPLYGLAEP 148
+PV + S CE E D S +G+ + SE S E
Sbjct: 685 EPVQKSTP-----------SDTCCELESDCDSDEGSLFTLSSISSESARSK------TEE 727
Query: 149 PAPTWTRQVGEESRVQQKAGVREQRIVTVDGVGRTAGIQEGPG------HQTEKAQVSAA 202
P EES + +G + + VD + Q PG EK +SA
Sbjct: 728 AVPD------EESLQDESSGASKDNVTAVDSLEENVTFQTIPGKCKNQEDPFEKPLISAP 781
Query: 203 GSG 205
SG
Sbjct: 782 DSG 784
>gi|110349719 titin isoform N2-A [Homo sapiens]
Length = 33423
Score = 32.3 bits (72), Expect = 0.42
Identities = 19/76 (25%), Positives = 33/76 (43%)
Query: 154 TRQVGEESRVQQKAGVREQRIVTVDGVGRTAGIQEGPGHQTEKAQVSAAGSGEPARRPML 213
T + E V+ VR ++ R+ G+ EG ++ ++A GSG+P+R
Sbjct: 29964 TGYIVERKEVRADRWVRVNKVPVTMTRYRSTGLTEGLEYEHRVTAINARGSGKPSRPSKP 30023
Query: 214 ISRTGTLKPQSQPVQP 229
I + P +P P
Sbjct: 30024 IVAMDPIAPPGKPQNP 30039
Score = 30.0 bits (66), Expect = 2.1
Identities = 15/48 (31%), Positives = 21/48 (43%)
Query: 182 RTAGIQEGPGHQTEKAQVSAAGSGEPARRPMLISRTGTLKPQSQPVQP 229
R G+ EG ++ A +AAG GEP+ + L P P P
Sbjct: 24962 RVTGLTEGHSYEFRVAAENAAGVGEPSEPSVFYRACDALYPPGPPSNP 25009
>gi|110349717 titin isoform novex-2 [Homo sapiens]
Length = 27118
Score = 32.3 bits (72), Expect = 0.42
Identities = 19/76 (25%), Positives = 33/76 (43%)
Query: 154 TRQVGEESRVQQKAGVREQRIVTVDGVGRTAGIQEGPGHQTEKAQVSAAGSGEPARRPML 213
T + E V+ VR ++ R+ G+ EG ++ ++A GSG+P+R
Sbjct: 23659 TGYIVERKEVRADRWVRVNKVPVTMTRYRSTGLTEGLEYEHRVTAINARGSGKPSRPSKP 23718
Query: 214 ISRTGTLKPQSQPVQP 229
I + P +P P
Sbjct: 23719 IVAMDPIAPPGKPQNP 23734
Score = 30.0 bits (66), Expect = 2.1
Identities = 15/48 (31%), Positives = 21/48 (43%)
Query: 182 RTAGIQEGPGHQTEKAQVSAAGSGEPARRPMLISRTGTLKPQSQPVQP 229
R G+ EG ++ A +AAG GEP+ + L P P P
Sbjct: 18657 RVTGLTEGHSYEFRVAAENAAGVGEPSEPSVFYRACDALYPPGPPSNP 18704
>gi|110349713 titin isoform novex-1 [Homo sapiens]
Length = 27051
Score = 32.3 bits (72), Expect = 0.42
Identities = 19/76 (25%), Positives = 33/76 (43%)
Query: 154 TRQVGEESRVQQKAGVREQRIVTVDGVGRTAGIQEGPGHQTEKAQVSAAGSGEPARRPML 213
T + E V+ VR ++ R+ G+ EG ++ ++A GSG+P+R
Sbjct: 23592 TGYIVERKEVRADRWVRVNKVPVTMTRYRSTGLTEGLEYEHRVTAINARGSGKPSRPSKP 23651
Query: 214 ISRTGTLKPQSQPVQP 229
I + P +P P
Sbjct: 23652 IVAMDPIAPPGKPQNP 23667
Score = 30.0 bits (66), Expect = 2.1
Identities = 15/48 (31%), Positives = 21/48 (43%)
Query: 182 RTAGIQEGPGHQTEKAQVSAAGSGEPARRPMLISRTGTLKPQSQPVQP 229
R G+ EG ++ A +AAG GEP+ + L P P P
Sbjct: 18590 RVTGLTEGHSYEFRVAAENAAGVGEPSEPSVFYRACDALYPPGPPSNP 18637
>gi|110349715 titin isoform N2-B [Homo sapiens]
Length = 26926
Score = 32.3 bits (72), Expect = 0.42
Identities = 19/76 (25%), Positives = 33/76 (43%)
Query: 154 TRQVGEESRVQQKAGVREQRIVTVDGVGRTAGIQEGPGHQTEKAQVSAAGSGEPARRPML 213
T + E V+ VR ++ R+ G+ EG ++ ++A GSG+P+R
Sbjct: 23467 TGYIVERKEVRADRWVRVNKVPVTMTRYRSTGLTEGLEYEHRVTAINARGSGKPSRPSKP 23526
Query: 214 ISRTGTLKPQSQPVQP 229
I + P +P P
Sbjct: 23527 IVAMDPIAPPGKPQNP 23542
Score = 30.0 bits (66), Expect = 2.1
Identities = 15/48 (31%), Positives = 21/48 (43%)
Query: 182 RTAGIQEGPGHQTEKAQVSAAGSGEPARRPMLISRTGTLKPQSQPVQP 229
R G+ EG ++ A +AAG GEP+ + L P P P
Sbjct: 18465 RVTGLTEGHSYEFRVAAENAAGVGEPSEPSVFYRACDALYPPGPPSNP 18512
>gi|18643383 inositol 1,4,5-trisphosphate 3-kinase C [Homo
sapiens]
Length = 683
Score = 32.3 bits (72), Expect = 0.42
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 39 SCGRIGLEPPRLLRKRKNGQQQPRGRPGSARPPAQP 74
+ R+GLE PR R+R+ GQQ+P PG+ P +P
Sbjct: 20 AAARMGLEAPRGGRRRQPGQQRP--GPGAGAPAGRP 53
>gi|21704287 sialidase 4 [Homo sapiens]
Length = 496
Score = 32.0 bits (71), Expect = 0.54
Identities = 48/190 (25%), Positives = 68/190 (35%), Gaps = 24/190 (12%)
Query: 24 TSKIPLLEIRT--QTAFSC--GRIGLEPPRLLRKRKNGQQQPRGRPGSARPPAQPPECGA 79
TS +P + + +TA+ C +G P R R + G P +PP P G
Sbjct: 270 TSFLPAERVASLPETAWGCQGSIVGFPAPAPNRPRDDSWSVGPGSP--LQPPLLGP--GV 325
Query: 80 DQRVTLLTGDPVSAAVSGSAFQDALQRVSSMECEWECDSSSVKGTCMGMEGTFSEWPPSA 139
+ DP V G F R D G G+ G W A
Sbjct: 326 HEPPEEAAVDPRGGQVPGGPFSRLQPRG---------DGPRQPGPRPGVSGDVGSWT-LA 375
Query: 140 LPLYGLAEPPAPTW---TRQVGEESRVQQKAGVR-EQRIVTVDGVGRTAGIQEGPGHQTE 195
LP+ A P +PTW + VG +R+ G+R Q + I EGP ++
Sbjct: 376 LPMPFAAPPQSPTWLLYSHPVGRRARLHM--GIRLSQSPLDPRSWTEPWVIYEGPSGYSD 433
Query: 196 KAQVSAAGSG 205
A + A G
Sbjct: 434 LASIGPAPEG 443
>gi|14277682 protocadherin gamma subfamily C, 4 isoform 2 precursor
[Homo sapiens]
Length = 871
Score = 32.0 bits (71), Expect = 0.54
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 60 QPRGRPGSARPPAQPPECGADQRVTLLT 87
+PR RPGS P A PP GA +T +T
Sbjct: 567 RPRARPGSLCPQALPPSVGAGHLITKVT 594
>gi|11128025 protocadherin gamma subfamily C, 4 isoform 1 precursor
[Homo sapiens]
Length = 938
Score = 32.0 bits (71), Expect = 0.54
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 60 QPRGRPGSARPPAQPPECGADQRVTLLT 87
+PR RPGS P A PP GA +T +T
Sbjct: 567 RPRARPGSLCPQALPPSVGAGHLITKVT 594
>gi|239752588 PREDICTED: hypothetical protein XP_002348309, partial
[Homo sapiens]
Length = 327
Score = 31.6 bits (70), Expect = 0.71
Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 15/115 (13%)
Query: 130 GTFSEWPPSALPLYGLAEPPAPTWTRQVG--EESRVQQKAGVREQRIVTVDGVGRTAGIQ 187
G F+ P ALP L+ P AP W G +E R Q+ G + + VG+ Q
Sbjct: 142 GDFAYATP-ALPEGALSHPQAPRWPPNPGKSQEDRDWQRDG-----LPSPCAVGQPGPAQ 195
Query: 188 EGPGHQTEKAQVSAAGSGEPA--RRPMLISRTGTLKPQ---SQPVQPSAGAENEW 237
GP Q+ A ++ GS A R P ++ +PQ + P QP+ + W
Sbjct: 196 AGPNGQSVLAPHASQGSQWSAWGRGPQVVG--AAWEPQAGAAAPHQPAPPESSAW 248
>gi|130492454 zinc finger RNA binding protein 2 isoform 1 [Homo
sapiens]
Length = 939
Score = 31.6 bits (70), Expect = 0.71
Identities = 30/104 (28%), Positives = 38/104 (36%), Gaps = 19/104 (18%)
Query: 57 GQQQPRGRPGSARPPAQPPECGADQRVTLLTGDPVSAAVSGSAFQDA--LQRVSSMECEW 114
GQ P G A+PP Q P + +G P S SG + A +Q SS
Sbjct: 133 GQPSPHGSHSHAQPPQQAP--------IVESGQPASTLSSGYTYPTATGVQPESSASIVT 184
Query: 115 ECDSSSVKGTCMGMEGTFSEWP-------PSALPLYGLAEPPAP 151
S TC T +P +A P Y A+PP P
Sbjct: 185 SYPPPSYNPTCTAY--TAPSYPNYDASVYSAASPFYPPAQPPPP 226
>gi|134142809 E2F transcription factor 5 isoform 2 [Homo sapiens]
Length = 345
Score = 31.2 bits (69), Expect = 0.93
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 56 NGQQQPRGRPGSARPPAQPPECGADQ 81
+GQQ P G+ RPP QPP+ A Q
Sbjct: 9 SGQQAPAGQGQGQRPPPQPPQAQAPQ 34
>gi|134142811 E2F transcription factor 5 isoform 1 [Homo sapiens]
Length = 346
Score = 31.2 bits (69), Expect = 0.93
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 56 NGQQQPRGRPGSARPPAQPPECGADQ 81
+GQQ P G+ RPP QPP+ A Q
Sbjct: 9 SGQQAPAGQGQGQRPPPQPPQAQAPQ 34
>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
Length = 1690
Score = 30.8 bits (68), Expect = 1.2
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 57 GQQQPRGRPGSARPPAQ--PPECGADQRVTLLTGDP 90
G Q PRG PG PP PP C D + L G P
Sbjct: 1109 GIQGPRGSPGRPGPPGSSGPPGCPGDHGMPGLRGQP 1144
>gi|153791244 hypothetical protein LOC55237 [Homo sapiens]
Length = 702
Score = 30.8 bits (68), Expect = 1.2
Identities = 27/101 (26%), Positives = 38/101 (37%), Gaps = 14/101 (13%)
Query: 135 WPPSALPLYGLAEPPAPTWTRQVGEESRVQQKAGVREQRIVTVDGVGRTAGIQEGPGHQT 194
WP L + P PT + E Q+K R+ V VG ++ EG +
Sbjct: 551 WPRGLSKL----QVPVPTLGKGGQEAEEKQEKEAGRDVTAVMAPPVGASSEDVEGGPSRE 606
Query: 195 EKAQVSAAGSGEPARRPMLISRTGTLKPQSQPVQPSAGAEN 235
Q A G+P P+L SQPV +AG +
Sbjct: 607 GALQEGATAQGQPHSGPLL----------SQPVVAAAGGRD 637
>gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens]
Length = 953
Score = 30.8 bits (68), Expect = 1.2
Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 6/112 (5%)
Query: 63 GRPGSARPPAQPPECGADQRVTLLTGDPVSAAVSGSAFQDALQRVSSMECEWECDSSSVK 122
G P AR +P +R +G ++ SGS+ + VSS+ SSS
Sbjct: 663 GDPREARRKERPARTPPRRRTLSGSGSGSGSSYSGSSSRSRSLSVSSVSSVSSATSSSSS 722
Query: 123 GTCMGMEGTFSEWPPSALPLYGL-AEPPAPTWTRQVGEESRVQQKAGVREQR 173
+ E +++ A P+ + PAP TR+ E+ + +++ GV+E++
Sbjct: 723 AHSVDSEDMYAD---LASPVSSASSRSPAPAQTRK--EKGKSKKEDGVKEEK 769
>gi|223646109 family with sequence similarity 157, member A [Homo
sapiens]
Length = 383
Score = 30.4 bits (67), Expect = 1.6
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 44 GLEPPRLLRKRKNGQQQPRGRPGSARPPAQPPE 76
G EP RLLR G P G P A+PP PP+
Sbjct: 219 GAEPSRLLRTYAGGAVIPTGTPERAQPP--PPQ 249
>gi|239745655 PREDICTED: family with sequence similarity 157, member
C [Homo sapiens]
Length = 387
Score = 30.4 bits (67), Expect = 1.6
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 44 GLEPPRLLRKRKNGQQQPRGRPGSARPPAQPPE 76
G EP RLLR G P G P A+PP PP+
Sbjct: 223 GAEPSRLLRTYAGGAVIPTGTPERAQPP--PPQ 253
>gi|239743047 PREDICTED: similar to family with sequence similarity
157, member B [Homo sapiens]
Length = 384
Score = 30.4 bits (67), Expect = 1.6
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 44 GLEPPRLLRKRKNGQQQPRGRPGSARPPAQPPE 76
G EP RLLR G P G P A+PP PP+
Sbjct: 220 GAEPSRLLRTYARGAVIPTGTPERAQPP--PPQ 250
>gi|223646111 family with sequence similarity 157, member B [Homo
sapiens]
Length = 384
Score = 30.4 bits (67), Expect = 1.6
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 44 GLEPPRLLRKRKNGQQQPRGRPGSARPPAQPPE 76
G EP RLLR G P G P A+PP PP+
Sbjct: 220 GAEPSRLLRTYAGGAVIPTGTPERAQPP--PPQ 250
>gi|169167813 PREDICTED: hypothetical protein [Homo sapiens]
Length = 260
Score = 30.0 bits (66), Expect = 2.1
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 8/44 (18%)
Query: 47 PPRLLRKRKNG-----QQQPRGR---PGSARPPAQPPECGADQR 82
PP+ L+ R G QQQPR R P S P PP +DQR
Sbjct: 42 PPQSLQSRCRGFFPAQQQQPRQRKIKPDSRSPTPVPPSFASDQR 85
>gi|169167899 PREDICTED: hypothetical protein [Homo sapiens]
Length = 260
Score = 30.0 bits (66), Expect = 2.1
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 8/44 (18%)
Query: 47 PPRLLRKRKNG-----QQQPRGR---PGSARPPAQPPECGADQR 82
PP+ L+ R G QQQPR R P S P PP +DQR
Sbjct: 42 PPQSLQSRCRGFFPAQQQQPRQRKIKPDSRSPTPVPPSFASDQR 85
>gi|169167609 PREDICTED: hypothetical protein [Homo sapiens]
Length = 260
Score = 30.0 bits (66), Expect = 2.1
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 8/44 (18%)
Query: 47 PPRLLRKRKNG-----QQQPRGR---PGSARPPAQPPECGADQR 82
PP+ L+ R G QQQPR R P S P PP +DQR
Sbjct: 42 PPQSLQSRCRGFFPAQQQQPRQRKIKPDSRSPTPVPPSFASDQR 85
>gi|55741677 SET domain containing 1A [Homo sapiens]
Length = 1707
Score = 30.0 bits (66), Expect = 2.1
Identities = 30/104 (28%), Positives = 39/104 (37%), Gaps = 15/104 (14%)
Query: 150 APTWTRQVGEESRVQQKAGVREQRIVTVDGVGRTAGIQEGPGHQTEKAQVSAAGSGEPA- 208
AP EE + QQ RE+ G G +EG + E + S++ GE A
Sbjct: 1338 APEVVVAEAEEPKPQQLQQQREE--------GEEEGEEEGEEEEEESSDSSSSSDGEGAL 1389
Query: 209 RRPMLISRTGTLKPQSQPVQPSAGAE------NEWWRLYAFWNS 246
RR L S +P P P A + LY WNS
Sbjct: 1390 RRRSLRSHARRRRPPPPPPPPPPRAYEPRSEFEQMTILYDIWNS 1433
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.129 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,972,062
Number of Sequences: 37866
Number of extensions: 609621
Number of successful extensions: 3031
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 75
Number of HSP's that attempted gapping in prelim test: 2837
Number of HSP's gapped (non-prelim): 279
length of query: 257
length of database: 18,247,518
effective HSP length: 100
effective length of query: 157
effective length of database: 14,460,918
effective search space: 2270364126
effective search space used: 2270364126
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.