Search of human proteins with 239755540

Search of human proteins with 239755540

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239755540 PREDICTED: hypothetical protein [Homo sapiens]
         (170 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239755540 PREDICTED: hypothetical protein [Homo sapiens]           349   6e-97
gi|239749992 PREDICTED: hypothetical protein [Homo sapiens]           349   6e-97
gi|239744303 PREDICTED: hypothetical protein XP_002343093 [Homo ...   349   6e-97
gi|110347449 POU domain, class 4, transcription factor 1 [Homo s...    35   0.031
gi|219803496 tectonic family member 2 isoform 2 [Homo sapiens]         30   1.3  
gi|31377681 tectonic family member 2 isoform 1 [Homo sapiens]          30   1.3  
gi|169217315 PREDICTED: hypothetical protein [Homo sapiens]            29   2.2  
gi|239756183 PREDICTED: hypothetical protein [Homo sapiens]            29   2.2  
gi|113430659 PREDICTED: hypothetical protein [Homo sapiens]            29   2.2  
gi|239750714 PREDICTED: hypothetical protein [Homo sapiens]            29   2.2  
gi|113430177 PREDICTED: hypothetical protein [Homo sapiens]            29   2.2  
gi|113430175 PREDICTED: hypothetical protein [Homo sapiens]            29   2.2  
gi|239745020 PREDICTED: hypothetical protein XP_002343333 [Homo ...    29   2.2  
gi|13399298 immunoglobulin lambda-like polypeptide 1 isoform a p...    29   2.2  
gi|194328689 storkhead box 1 isoform c [Homo sapiens]                  28   2.9  
gi|194328687 storkhead box 1 isoform b [Homo sapiens]                  28   2.9  
gi|194328691 storkhead box 1 isoform a [Homo sapiens]                  28   2.9  
gi|63025200 storkhead box 1 isoform a [Homo sapiens]                   28   2.9  
gi|239746772 PREDICTED: similar to hCG1981372 [Homo sapiens]           28   2.9  
gi|61966693 immunoglobulin lambda-like polypeptide 3 [Homo sapiens]    28   2.9  
gi|13430848 nuclear receptor subfamily 1, group D, member 1 [Hom...    28   3.8  
gi|21541824 transducin-like enhancer protein 1 [Homo sapiens]          28   3.8  
gi|51242941 G6f protein [Homo sapiens]                                 28   3.8  
gi|148886654 polydom [Homo sapiens]                                    28   3.8  
gi|239752152 PREDICTED: hypothetical protein XP_002348153 [Homo ...    28   5.0  
gi|239749957 PREDICTED: hypothetical protein [Homo sapiens]            28   5.0  
gi|25286703 hypothetical protein LOC90231 [Homo sapiens]               28   5.0  
gi|40254434 phosphodiesterase 3B [Homo sapiens]                        27   6.5  
gi|86991432 GLI-Kruppel family member GLI2 [Homo sapiens]              27   6.5  
gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sap...    27   6.5  

>gi|239755540 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 170

 Score =  349 bits (896), Expect = 6e-97
 Identities = 170/170 (100%), Positives = 170/170 (100%)

Query: 1   MWGMQVECGEEKRRALGSGPLSQSGLQRGVQDVIVMAVAVGVAVIALGAGVVGCLLQPHQ 60
           MWGMQVECGEEKRRALGSGPLSQSGLQRGVQDVIVMAVAVGVAVIALGAGVVGCLLQPHQ
Sbjct: 1   MWGMQVECGEEKRRALGSGPLSQSGLQRGVQDVIVMAVAVGVAVIALGAGVVGCLLQPHQ 60

Query: 61  HDSPAGHLQHHWGASACLSIPPEAWSSRRSRHPQAVTAAGEATRAVVGWLPMDMCPSPTW 120
           HDSPAGHLQHHWGASACLSIPPEAWSSRRSRHPQAVTAAGEATRAVVGWLPMDMCPSPTW
Sbjct: 61  HDSPAGHLQHHWGASACLSIPPEAWSSRRSRHPQAVTAAGEATRAVVGWLPMDMCPSPTW 120

Query: 121 QDPPRGRAFHRAENRQRRNSLEVAQISLVAPVLQLSEKLPKSSIMPSLME 170
           QDPPRGRAFHRAENRQRRNSLEVAQISLVAPVLQLSEKLPKSSIMPSLME
Sbjct: 121 QDPPRGRAFHRAENRQRRNSLEVAQISLVAPVLQLSEKLPKSSIMPSLME 170


>gi|239749992 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 170

 Score =  349 bits (896), Expect = 6e-97
 Identities = 170/170 (100%), Positives = 170/170 (100%)

Query: 1   MWGMQVECGEEKRRALGSGPLSQSGLQRGVQDVIVMAVAVGVAVIALGAGVVGCLLQPHQ 60
           MWGMQVECGEEKRRALGSGPLSQSGLQRGVQDVIVMAVAVGVAVIALGAGVVGCLLQPHQ
Sbjct: 1   MWGMQVECGEEKRRALGSGPLSQSGLQRGVQDVIVMAVAVGVAVIALGAGVVGCLLQPHQ 60

Query: 61  HDSPAGHLQHHWGASACLSIPPEAWSSRRSRHPQAVTAAGEATRAVVGWLPMDMCPSPTW 120
           HDSPAGHLQHHWGASACLSIPPEAWSSRRSRHPQAVTAAGEATRAVVGWLPMDMCPSPTW
Sbjct: 61  HDSPAGHLQHHWGASACLSIPPEAWSSRRSRHPQAVTAAGEATRAVVGWLPMDMCPSPTW 120

Query: 121 QDPPRGRAFHRAENRQRRNSLEVAQISLVAPVLQLSEKLPKSSIMPSLME 170
           QDPPRGRAFHRAENRQRRNSLEVAQISLVAPVLQLSEKLPKSSIMPSLME
Sbjct: 121 QDPPRGRAFHRAENRQRRNSLEVAQISLVAPVLQLSEKLPKSSIMPSLME 170


>gi|239744303 PREDICTED: hypothetical protein XP_002343093 [Homo
           sapiens]
          Length = 170

 Score =  349 bits (896), Expect = 6e-97
 Identities = 170/170 (100%), Positives = 170/170 (100%)

Query: 1   MWGMQVECGEEKRRALGSGPLSQSGLQRGVQDVIVMAVAVGVAVIALGAGVVGCLLQPHQ 60
           MWGMQVECGEEKRRALGSGPLSQSGLQRGVQDVIVMAVAVGVAVIALGAGVVGCLLQPHQ
Sbjct: 1   MWGMQVECGEEKRRALGSGPLSQSGLQRGVQDVIVMAVAVGVAVIALGAGVVGCLLQPHQ 60

Query: 61  HDSPAGHLQHHWGASACLSIPPEAWSSRRSRHPQAVTAAGEATRAVVGWLPMDMCPSPTW 120
           HDSPAGHLQHHWGASACLSIPPEAWSSRRSRHPQAVTAAGEATRAVVGWLPMDMCPSPTW
Sbjct: 61  HDSPAGHLQHHWGASACLSIPPEAWSSRRSRHPQAVTAAGEATRAVVGWLPMDMCPSPTW 120

Query: 121 QDPPRGRAFHRAENRQRRNSLEVAQISLVAPVLQLSEKLPKSSIMPSLME 170
           QDPPRGRAFHRAENRQRRNSLEVAQISLVAPVLQLSEKLPKSSIMPSLME
Sbjct: 121 QDPPRGRAFHRAENRQRRNSLEVAQISLVAPVLQLSEKLPKSSIMPSLME 170


>gi|110347449 POU domain, class 4, transcription factor 1 [Homo
           sapiens]
          Length = 419

 Score = 35.0 bits (79), Expect = 0.031
 Identities = 40/127 (31%), Positives = 53/127 (41%), Gaps = 20/127 (15%)

Query: 48  GAGVVGCLLQPHQHDSPAGHLQHHWGASAC---LSIPPEAWSSRRSRHPQAV-------- 96
           G G++G    PH H    GHL H   A+A      +P     +  + H  A         
Sbjct: 179 GGGLLGGSAHPHPHMHSLGHLSHPAAAAAMNMPSGLPHPGLVAAAAHHGAAAAAAAAAAG 238

Query: 97  -TAAGEATRAVVGWLPM-DMCPSPTWQDPPRGRAFHRAEN-RQRRNSLEVAQISLVAPVL 153
             AA  A  AVVG   +  +C S T  DP    AF  AE  +QRR  L V Q  + + + 
Sbjct: 239 QVAAASAAAAVVGAAGLASICDSDT--DPRELEAF--AERFKQRRIKLGVTQADVGSALA 294

Query: 154 QLSEKLP 160
            L  K+P
Sbjct: 295 NL--KIP 299


>gi|219803496 tectonic family member 2 isoform 2 [Homo sapiens]
          Length = 696

 Score = 29.6 bits (65), Expect = 1.3
 Identities = 16/46 (34%), Positives = 22/46 (47%)

Query: 98  AAGEATRAVVGWLPMDMCPSPTWQDPPRGRAFHRAENRQRRNSLEV 143
           +AG  TR V  W P     SP    P  G  +H A + ++ +S EV
Sbjct: 219 SAGTTTRGVPDWFPFLCVQSPLANTPFLGYFYHGAVSPKQDSSFEV 264


>gi|31377681 tectonic family member 2 isoform 1 [Homo sapiens]
          Length = 697

 Score = 29.6 bits (65), Expect = 1.3
 Identities = 16/46 (34%), Positives = 22/46 (47%)

Query: 98  AAGEATRAVVGWLPMDMCPSPTWQDPPRGRAFHRAENRQRRNSLEV 143
           +AG  TR V  W P     SP    P  G  +H A + ++ +S EV
Sbjct: 220 SAGTTTRGVPDWFPFLCVQSPLANTPFLGYFYHGAVSPKQDSSFEV 265


>gi|169217315 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 2061

 Score = 28.9 bits (63), Expect = 2.2
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 73  GASACLSIPPEAWSSRRSRHPQAVTAAGEATRAVVGWLPMDMCPSPTWQDPPRGRAFHRA 132
           GA   ++  P A  S RSR  +A+     A R    W    + P+P      R RA HRA
Sbjct: 191 GAPRAIAPTPGAMLSGRSRARRAIAPTPSALRGYRSWAHRAIAPTPGCLYSDRSRA-HRA 249


>gi|239756183 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 229

 Score = 28.9 bits (63), Expect = 2.2
 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 6/68 (8%)

Query: 52  VGCLLQPHQHDSPAGHLQHHWGASACLSIPPEAWSSRRSRHPQAVTAAGEATRAVVGWLP 111
           +  +LQ  +H      LQH   A      P  A  SRRS HP+++ A     RA  G  P
Sbjct: 150 LAAVLQQQRHQLAQVLLQHRHVAP-----PRPAGRSRRS-HPRSLAALASRRRACAGGGP 203

Query: 112 MDMCPSPT 119
            D+   P+
Sbjct: 204 GDVAARPS 211


>gi|113430659 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 2061

 Score = 28.9 bits (63), Expect = 2.2
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 73  GASACLSIPPEAWSSRRSRHPQAVTAAGEATRAVVGWLPMDMCPSPTWQDPPRGRAFHRA 132
           GA   ++  P A  S RSR  +A+     A R    W    + P+P      R RA HRA
Sbjct: 191 GAPRAIAPTPGAMLSGRSRARRAIAPTPSALRGYRSWAHRAIAPTPGCLYSDRSRA-HRA 249


>gi|239750714 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 229

 Score = 28.9 bits (63), Expect = 2.2
 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 6/68 (8%)

Query: 52  VGCLLQPHQHDSPAGHLQHHWGASACLSIPPEAWSSRRSRHPQAVTAAGEATRAVVGWLP 111
           +  +LQ  +H      LQH   A      P  A  SRRS HP+++ A     RA  G  P
Sbjct: 150 LAAVLQQQRHQLAQVLLQHRHVAP-----PRPAGRSRRS-HPRSLAALASRRRACAGGGP 203

Query: 112 MDMCPSPT 119
            D+   P+
Sbjct: 204 GDVAARPS 211


>gi|113430177 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 2028

 Score = 28.9 bits (63), Expect = 2.2
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 73  GASACLSIPPEAWSSRRSRHPQAVTAAGEATRAVVGWLPMDMCPSPTWQDPPRGRAFHRA 132
           GA   ++  P A  S RSR  +A+     A R    W    + P+P      R RA HRA
Sbjct: 191 GAPRAIAPTPGAMLSGRSRARRAIAPTPSALRGYRSWAHRAIAPTPGCLYSDRSRA-HRA 249


>gi|113430175 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 1934

 Score = 28.9 bits (63), Expect = 2.2
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 73  GASACLSIPPEAWSSRRSRHPQAVTAAGEATRAVVGWLPMDMCPSPTWQDPPRGRAFHRA 132
           GA   ++  P A  S RSR  +A+     A R    W    + P+P      R RA HRA
Sbjct: 191 GAPRAIAPTPGAMLSGRSRARRAIAPTPSALRGYRSWAHRAIAPTPGCLYSDRSRA-HRA 249


>gi|239745020 PREDICTED: hypothetical protein XP_002343333 [Homo
           sapiens]
          Length = 229

 Score = 28.9 bits (63), Expect = 2.2
 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 6/68 (8%)

Query: 52  VGCLLQPHQHDSPAGHLQHHWGASACLSIPPEAWSSRRSRHPQAVTAAGEATRAVVGWLP 111
           +  +LQ  +H      LQH   A      P  A  SRRS HP+++ A     RA  G  P
Sbjct: 150 LAAVLQQQRHQLAQVLLQHRHVAP-----PRPAGRSRRS-HPRSLAALASRRRACAGGGP 203

Query: 112 MDMCPSPT 119
            D+   P+
Sbjct: 204 GDVAARPS 211


>gi|13399298 immunoglobulin lambda-like polypeptide 1 isoform a
           precursor [Homo sapiens]
          Length = 213

 Score = 28.9 bits (63), Expect = 2.2
 Identities = 14/44 (31%), Positives = 22/44 (50%)

Query: 63  SPAGHLQHHWGASACLSIPPEAWSSRRSRHPQAVTAAGEATRAV 106
           +P+    + + AS+ LS+ PE W SRRS   Q +       + V
Sbjct: 164 TPSKQSNNKYAASSYLSLTPEQWRSRRSYSCQVMHEGSTVEKTV 207


>gi|194328689 storkhead box 1 isoform c [Homo sapiens]
          Length = 169

 Score = 28.5 bits (62), Expect = 2.9
 Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 5/79 (6%)

Query: 76  ACLSIPPEAWSSRRSRHPQAVTAAGEATRAVVGWLPMDMCPSPTWQDPPRGRAFHRAENR 135
           ACL +  +AW  R  R P+     G   RAV    P+ M P    Q  P G     A + 
Sbjct: 78  ACLQVLRDAWRRRALRPPR-----GFRIRAVGDVFPVQMNPITQSQFVPLGEVLCCAISD 132

Query: 136 QRRNSLEVAQISLVAPVLQ 154
                + V Q SL+  +++
Sbjct: 133 MNTAQIVVTQESLLERLMK 151


>gi|194328687 storkhead box 1 isoform b [Homo sapiens]
          Length = 227

 Score = 28.5 bits (62), Expect = 2.9
 Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 5/79 (6%)

Query: 76  ACLSIPPEAWSSRRSRHPQAVTAAGEATRAVVGWLPMDMCPSPTWQDPPRGRAFHRAENR 135
           ACL +  +AW  R  R P+     G   RAV    P+ M P    Q  P G     A + 
Sbjct: 78  ACLQVLRDAWRRRALRPPR-----GFRIRAVGDVFPVQMNPITQSQFVPLGEVLCCAISD 132

Query: 136 QRRNSLEVAQISLVAPVLQ 154
                + V Q SL+  +++
Sbjct: 133 MNTAQIVVTQESLLERLMK 151


>gi|194328691 storkhead box 1 isoform a [Homo sapiens]
          Length = 989

 Score = 28.5 bits (62), Expect = 2.9
 Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 5/79 (6%)

Query: 76  ACLSIPPEAWSSRRSRHPQAVTAAGEATRAVVGWLPMDMCPSPTWQDPPRGRAFHRAENR 135
           ACL +  +AW  R  R P+     G   RAV    P+ M P    Q  P G     A + 
Sbjct: 78  ACLQVLRDAWRRRALRPPR-----GFRIRAVGDVFPVQMNPITQSQFVPLGEVLCCAISD 132

Query: 136 QRRNSLEVAQISLVAPVLQ 154
                + V Q SL+  +++
Sbjct: 133 MNTAQIVVTQESLLERLMK 151


>gi|63025200 storkhead box 1 isoform a [Homo sapiens]
          Length = 989

 Score = 28.5 bits (62), Expect = 2.9
 Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 5/79 (6%)

Query: 76  ACLSIPPEAWSSRRSRHPQAVTAAGEATRAVVGWLPMDMCPSPTWQDPPRGRAFHRAENR 135
           ACL +  +AW  R  R P+     G   RAV    P+ M P    Q  P G     A + 
Sbjct: 78  ACLQVLRDAWRRRALRPPR-----GFRIRAVGDVFPVQMNPITQSQFVPLGEVLCCAISD 132

Query: 136 QRRNSLEVAQISLVAPVLQ 154
                + V Q SL+  +++
Sbjct: 133 MNTAQIVVTQESLLERLMK 151


>gi|239746772 PREDICTED: similar to hCG1981372 [Homo sapiens]
          Length = 317

 Score = 28.5 bits (62), Expect = 2.9
 Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 18/69 (26%)

Query: 72  WGASACLSIPPEAWSSRRSRHPQ-------------AVTAAGEATRAVV----GWLPMDM 114
           WGAS   + PP   +S  +R P+              + A G A  AV      W P ++
Sbjct: 146 WGASVDAAAPPSEAASAEARLPERSGPARRPGPECVPMKAPGLAQAAVAEETPDWAP-EL 204

Query: 115 CPSPTWQDP 123
           CPSP  + P
Sbjct: 205 CPSPESRSP 213


>gi|61966693 immunoglobulin lambda-like polypeptide 3 [Homo sapiens]
          Length = 224

 Score = 28.5 bits (62), Expect = 2.9
 Identities = 15/44 (34%), Positives = 22/44 (50%)

Query: 63  SPAGHLQHHWGASACLSIPPEAWSSRRSRHPQAVTAAGEATRAV 106
           +P+      + AS+ LS+ PE W SRRS   Q +     A + V
Sbjct: 175 TPSKQSNSKYMASSYLSLTPEQWRSRRSYSCQVMHEGSTAEKTV 218


>gi|13430848 nuclear receptor subfamily 1, group D, member 1 [Homo
           sapiens]
          Length = 614

 Score = 28.1 bits (61), Expect = 3.8
 Identities = 17/80 (21%), Positives = 27/80 (33%), Gaps = 10/80 (12%)

Query: 59  HQHDSPAGHLQHHWGASACLSIPPEAWSSRRSRHPQAVTAAGEATRAVVGWLPMDMCPSP 118
           H   SP     H W    C   P +  +    RH +A+    +A  +            P
Sbjct: 318 HASGSPPATTPHRWENQGCPPAPNDNNTLAAQRHNEALNGLRQAPSSY----------PP 367

Query: 119 TWQDPPRGRAFHRAENRQRR 138
           TW   P   + H++ +   R
Sbjct: 368 TWPPGPAHHSCHQSNSNGHR 387


>gi|21541824 transducin-like enhancer protein 1 [Homo sapiens]
          Length = 770

 Score = 28.1 bits (61), Expect = 3.8
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 1/74 (1%)

Query: 39  AVGVAVIALGAGVVGCLLQPHQHDSPAGHLQHHWGASACLSIPPEAWSSRRSRHPQAVTA 98
           A+   V    AG+   L  P  + +P G + H  G +  L+ P  A++S  +  PQ   A
Sbjct: 346 AIDPLVNQAAAGLRTPLAVPGPYPAPFGMVPHA-GMNGELTSPGAAYASLHNMSPQMSAA 404

Query: 99  AGEATRAVVGWLPM 112
           A  A     G  PM
Sbjct: 405 AAAAAVVAYGRSPM 418


>gi|51242941 G6f protein [Homo sapiens]
          Length = 297

 Score = 28.1 bits (61), Expect = 3.8
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 66  GHLQHHWGASACLSI--PPEAWSSRRSRHPQAVTAAGEATRAVVGWLPMDMCPSPTWQDP 123
           G +Q  WG+ A L +  P E  S  RSR P+ +       + V   L   +  SP    P
Sbjct: 168 GRVQSFWGSEAALLLVCPGEGLSEPRSRRPRIIRCLMTHNKGVSFSLAASIDASPALCAP 227

Query: 124 PRG 126
             G
Sbjct: 228 STG 230


>gi|148886654 polydom [Homo sapiens]
          Length = 3571

 Score = 28.1 bits (61), Expect = 3.8
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 7/70 (10%)

Query: 64   PAGHLQHHWGASACLSIPPEAWSSRRSRHPQAVTAAG----EATRAVVGWLPMDMCPSPT 119
            P G  Q  +G+ +CLS P    +S   R    ++A G    E   +  G +P   CP   
Sbjct: 1073 PLGTYQPKFGSRSCLSCPEN--TSTVKRGAVNISACGVPCPEGKFSRSGLMPCHPCPRDY 1130

Query: 120  WQDPPRGRAF 129
            +Q P  G+AF
Sbjct: 1131 YQ-PNAGKAF 1139


>gi|239752152 PREDICTED: hypothetical protein XP_002348153 [Homo
           sapiens]
          Length = 264

 Score = 27.7 bits (60), Expect = 5.0
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 63  SPAGHLQHHWGASACLSIPPEAWSSRRSRHPQAVTAAGEATRAVV 107
           +P+    + + AS+ LS+ PE W S RS   Q VT  G      V
Sbjct: 215 TPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQ-VTHEGSTVEKTV 258


>gi|239749957 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 707

 Score = 27.7 bits (60), Expect = 5.0
 Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 41  GVAVIALGAGVVGCLLQPHQHDSPAGHLQHHWGASACLSIPPEAWSSRRSRHP 93
           G+ V       VGCL Q H  D  A  +    G     S PP AW     RHP
Sbjct: 402 GIGVHGAPRPQVGCLPQAHP-DLGASGVGSAKGPCPVSSPPPRAWGLPFPRHP 453


>gi|25286703 hypothetical protein LOC90231 [Homo sapiens]
          Length = 634

 Score = 27.7 bits (60), Expect = 5.0
 Identities = 14/49 (28%), Positives = 18/49 (36%)

Query: 75  SACLSIPPEAWSSRRSRHPQAVTAAGEATRAVVGWLPMDMCPSPTWQDP 123
           SACL     AW   R R        G       G+L +D+  +  W  P
Sbjct: 63  SACLEAATRAWRGLRERGEVVPLGPGVPALVANGFLALDVAANRLWVTP 111


>gi|40254434 phosphodiesterase 3B [Homo sapiens]
          Length = 1112

 Score = 27.3 bits (59), Expect = 6.5
 Identities = 11/16 (68%), Positives = 11/16 (68%)

Query: 115 CPSPTWQDPPRGRAFH 130
           C SP  QDPPRG  FH
Sbjct: 35  CVSPLRQDPPRGFFFH 50


>gi|86991432 GLI-Kruppel family member GLI2 [Homo sapiens]
          Length = 1586

 Score = 27.3 bits (59), Expect = 6.5
 Identities = 15/46 (32%), Positives = 23/46 (50%)

Query: 8    CGEEKRRALGSGPLSQSGLQRGVQDVIVMAVAVGVAVIALGAGVVG 53
            C + +   L S P +  GL RG       +++  VA+ A+ AGV G
Sbjct: 1001 CADRRGLRLQSHPSTDGGLARGAYSPRPPSISENVAMEAVAAGVDG 1046


>gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sapiens]
          Length = 2462

 Score = 27.3 bits (59), Expect = 6.5
 Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 3/80 (3%)

Query: 3    GMQV-ECGEEKRRALGSGPLSQSGLQRGVQDVIVMAVAVGVAVIALGAGVVGCLLQPHQH 61
            GM V +C +E  R+  SGP  ++   +   D++   V   ++  ++  G++G  + P +H
Sbjct: 1274 GMSVTQCSKEDGRS-SSGPPHETAAPKRTYDMMEGRVGRAISSASI-EGLMGRAIPPERH 1331

Query: 62   DSPAGHLQHHWGASACLSIP 81
                   QHH   S    IP
Sbjct: 1332 SPHHLKEQHHIRGSITQGIP 1351


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.131    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,279,053
Number of Sequences: 37866
Number of extensions: 331374
Number of successful extensions: 1038
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1014
Number of HSP's gapped (non-prelim): 40
length of query: 170
length of database: 18,247,518
effective HSP length: 95
effective length of query: 75
effective length of database: 14,650,248
effective search space: 1098768600
effective search space used: 1098768600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.