Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100289464 Sequence: fasta or formatted (170aa) NCBI GI: 239749992
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {170aa} PREDICTED: hypothetical protein XP_002343093
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.2         19           2
 C cysteine            2.4          4           1
 D aspartate           2.4          4           1
 E glutamate           5.3          9           2
 F phenylalanine       0.6          1           1
 G glycine             8.8         15           1
 H histidine           4.1          7           2
 I isoleucine          2.9          5           1
 K lysine              1.8          3           1
 L leucine             8.8         15           2
 M methionine          4.1          7           1
 N asparagine          1.2          2           1
 P proline             8.2         14           2
 Q glutamine           7.1         12           1
 R arginine            7.6         13           2
 S serine              9.4         16           2
 T threonine           1.8          3           1
 V valine              9.4         16           2
 W tryptophan          2.9          5           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100134181          1.000   PREDICTED: hypothetical protein 
LOC100289464          1.000   PREDICTED: hypothetical protein XP_002343093 
POU4F1                0.031   POU domain, class 4, transcription factor 1 
TCTN2                 0.015   tectonic family member 2 isoform 2 
TCTN2                 0.015   tectonic family member 2 isoform 1 
LOC728317             0.012   PREDICTED: hypothetical protein 
LOC100293445          0.012   PREDICTED: hypothetical protein 
LOC728317             0.012   PREDICTED: hypothetical protein 
LOC100288225          0.012   PREDICTED: hypothetical protein 
LOC728317             0.012   PREDICTED: hypothetical protein 
LOC728307             0.012   PREDICTED: hypothetical protein 
LOC100288225          0.012   PREDICTED: hypothetical protein XP_002343333 
IGLL1                 0.012   immunoglobulin lambda-like polypeptide 1 isoform a p...
STOX1                 0.009   storkhead box 1 isoform c 
STOX1                 0.009   storkhead box 1 isoform b 
STOX1                 0.009   storkhead box 1 isoform a 
STOX1                 0.009   storkhead box 1 isoform a 
LOC729162             0.009   PREDICTED: similar to hCG1981372 
IGLL3                 0.009   immunoglobulin lambda-like polypeptide 3 
NR1D1                 0.009   nuclear receptor subfamily 1, group D, member 1 [Hom...
TLE1                  0.009   transducin-like enhancer protein 1 
LY6G6F                0.009   G6f protein 
SVEP1                 0.009   polydom 
LOC100290481          0.009   PREDICTED: hypothetical protein XP_002348153 
LOC100294438          0.009   PREDICTED: hypothetical protein 
KIAA2013              0.009   hypothetical protein LOC90231 
PDE3B                 0.006   phosphodiesterase 3B 
GLI2                  0.006   GLI-Kruppel family member GLI2 
NCOR2                 0.006   nuclear receptor co-repressor 2 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press