Guide to the Human Genome
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Name: PDE3B Sequence: fasta or formatted (1112aa) NCBI GI: 40254434
Description:

phosphodiesterase 3B

Referenced in:

Cyclic Nucleotides

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         72           3
 C cysteine            2.9         32           2
 D aspartate           4.9         55           2
 E glutamate           7.4         82           4
 F phenylalanine       4.1         46           3
 G glycine             6.6         73           3
 H histidine           2.7         30           2
 I isoleucine          3.9         43           1
 K lysine              3.8         42           2
 L leucine            12.0        133           3
 M methionine          1.4         16           1
 N asparagine          5.3         59           2
 P proline             6.7         74           3
 Q glutamine           3.8         42           2
 R arginine            6.0         67           3
 S serine              9.7        108           3
 T threonine           3.6         40           2
 V valine              4.5         50           1
 W tryptophan          2.1         23           2
 Y tyrosine            2.2         25           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   phosphodiesterase 3B 
PDE3A                 0.340   phosphodiesterase 3A 
PDE4D                 0.072   phosphodiesterase 4D isoform 1 
PDE4D                 0.072   phosphodiesterase 4D isoform 2 
PDE1A                 0.070   phosphodiesterase 1A isoform 2 
PDE1A                 0.070   phosphodiesterase 1A isoform 1 
PDE1C                 0.069   phosphodiesterase 1C 
PDE4B                 0.069   phosphodiesterase 4B isoform 1 
PDE4B                 0.069   phosphodiesterase 4B isoform 3 
PDE4B                 0.069   phosphodiesterase 4B isoform 2 
PDE4B                 0.069   phosphodiesterase 4B isoform 1 
PDE4A                 0.067   phosphodiesterase 4A isoform 3 
PDE4A                 0.067   phosphodiesterase 4A isoform 2 
PDE4A                 0.067   phosphodiesterase 4A isoform 1 
PDE4A                 0.067   phosphodiesterase 4A isoform 4 
PDE4C                 0.064   phosphodiesterase 4C isoform PDE4C-2 
PDE4C                 0.064   phosphodiesterase 4C isoform PDE4C-3 
PDE4C                 0.064   phosphodiesterase 4C isoform PDE4C-1 
PDE1B                 0.063   phosphodiesterase 1B 
PDE8B                 0.055   phosphodiesterase 8B isoform 2 
PDE8B                 0.055   phosphodiesterase 8B isoform 4 
PDE8B                 0.055   phosphodiesterase 8B isoform 5 
PDE8B                 0.055   phosphodiesterase 8B isoform 3 
PDE8B                 0.055   phosphodiesterase 8B isoform 1 
PDE8A                 0.052   phosphodiesterase 8A isoform 2 
PDE8A                 0.052   phosphodiesterase 8A isoform 1 
PDE7A                 0.051   phosphodiesterase 7A isoform a 
PDE7A                 0.046   phosphodiesterase 7A isoform b 
PDE7B                 0.045   phosphodiesterase 7B 
PDE9A                 0.042   phosphodiesterase 9A isoform g 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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