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Search of human proteins with 239755425
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239755425 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
(103 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755425 PREDICTED: hypothetical protein isoform 1 [Homo sap... 228 6e-61
gi|239749887 PREDICTED: hypothetical protein isoform 1 [Homo sap... 228 6e-61
gi|239744189 PREDICTED: hypothetical protein isoform 1 [Homo sap... 228 6e-61
gi|239755427 PREDICTED: hypothetical protein isoform 2 [Homo sap... 212 4e-56
gi|239749889 PREDICTED: hypothetical protein isoform 2 [Homo sap... 212 4e-56
gi|239744191 PREDICTED: hypothetical protein isoform 2 [Homo sap... 212 4e-56
gi|52632381 melanoma antigen family D, 1 isoform a [Homo sapiens] 33 0.037
gi|52632379 melanoma antigen family D, 1 isoform b [Homo sapiens] 33 0.037
gi|52632377 melanoma antigen family D, 1 isoform b [Homo sapiens] 33 0.037
gi|40068065 hypothetical protein LOC54058 [Homo sapiens] 31 0.24
gi|7705983 coatomer protein complex, subunit zeta 2 [Homo sapiens] 30 0.41
gi|4559408 colony stimulating factor 2 receptor, beta precursor ... 30 0.53
gi|239745655 PREDICTED: family with sequence similarity 157, mem... 30 0.53
gi|223646109 family with sequence similarity 157, member A [Homo... 29 0.70
gi|238624167 SEC14p-like protein TAP3 isoform b [Homo sapiens] 29 0.70
gi|28376621 SEC14p-like protein TAP3 isoform a [Homo sapiens] 29 0.70
gi|169210554 PREDICTED: FLJ44904 protein [Homo sapiens] 29 0.70
gi|239743047 PREDICTED: similar to family with sequence similari... 29 0.70
gi|223646111 family with sequence similarity 157, member B [Homo... 29 0.70
gi|239740948 PREDICTED: hypothetical protein LOC644246 [Homo sap... 29 0.91
gi|169209664 PREDICTED: hypothetical protein FLJ39639 [Homo sapi... 28 1.6
gi|113426298 PREDICTED: hypothetical protein FLJ39639 [Homo sapi... 28 1.6
gi|113425870 PREDICTED: hypothetical protein LOC283876 [Homo sap... 28 1.6
gi|228008410 BEN domain containing 4 isoform b [Homo sapiens] 28 1.6
gi|148762950 BEN domain containing 4 isoform a [Homo sapiens] 28 1.6
gi|239741653 PREDICTED: hypothetical protein XP_002342271 [Homo ... 28 2.0
gi|21265070 mitochondrial ribosomal protein L2 [Homo sapiens] 28 2.0
gi|33469137 solute carrier family 35, member E2 [Homo sapiens] 28 2.0
gi|213972621 ATPase type 13A2 isoform 3 [Homo sapiens] 27 2.6
gi|57863314 vacuolar protein sorting 37C [Homo sapiens] 27 2.6
>gi|239755425 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
Length = 103
Score = 228 bits (582), Expect = 6e-61
Identities = 103/103 (100%), Positives = 103/103 (100%)
Query: 1 MTAPARRSRSLRPGMWSPKEWWEPQPGRDAAAARARSPYPGHLWKPAHLLHQPFPNTVVP 60
MTAPARRSRSLRPGMWSPKEWWEPQPGRDAAAARARSPYPGHLWKPAHLLHQPFPNTVVP
Sbjct: 1 MTAPARRSRSLRPGMWSPKEWWEPQPGRDAAAARARSPYPGHLWKPAHLLHQPFPNTVVP 60
Query: 61 PLPSLLKNRIVWGSGIFWTPGTPIRLPLVPLLQSNEVCFGFVY 103
PLPSLLKNRIVWGSGIFWTPGTPIRLPLVPLLQSNEVCFGFVY
Sbjct: 61 PLPSLLKNRIVWGSGIFWTPGTPIRLPLVPLLQSNEVCFGFVY 103
>gi|239749887 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
Length = 103
Score = 228 bits (582), Expect = 6e-61
Identities = 103/103 (100%), Positives = 103/103 (100%)
Query: 1 MTAPARRSRSLRPGMWSPKEWWEPQPGRDAAAARARSPYPGHLWKPAHLLHQPFPNTVVP 60
MTAPARRSRSLRPGMWSPKEWWEPQPGRDAAAARARSPYPGHLWKPAHLLHQPFPNTVVP
Sbjct: 1 MTAPARRSRSLRPGMWSPKEWWEPQPGRDAAAARARSPYPGHLWKPAHLLHQPFPNTVVP 60
Query: 61 PLPSLLKNRIVWGSGIFWTPGTPIRLPLVPLLQSNEVCFGFVY 103
PLPSLLKNRIVWGSGIFWTPGTPIRLPLVPLLQSNEVCFGFVY
Sbjct: 61 PLPSLLKNRIVWGSGIFWTPGTPIRLPLVPLLQSNEVCFGFVY 103
>gi|239744189 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
Length = 103
Score = 228 bits (582), Expect = 6e-61
Identities = 103/103 (100%), Positives = 103/103 (100%)
Query: 1 MTAPARRSRSLRPGMWSPKEWWEPQPGRDAAAARARSPYPGHLWKPAHLLHQPFPNTVVP 60
MTAPARRSRSLRPGMWSPKEWWEPQPGRDAAAARARSPYPGHLWKPAHLLHQPFPNTVVP
Sbjct: 1 MTAPARRSRSLRPGMWSPKEWWEPQPGRDAAAARARSPYPGHLWKPAHLLHQPFPNTVVP 60
Query: 61 PLPSLLKNRIVWGSGIFWTPGTPIRLPLVPLLQSNEVCFGFVY 103
PLPSLLKNRIVWGSGIFWTPGTPIRLPLVPLLQSNEVCFGFVY
Sbjct: 61 PLPSLLKNRIVWGSGIFWTPGTPIRLPLVPLLQSNEVCFGFVY 103
>gi|239755427 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 120
Score = 212 bits (540), Expect = 4e-56
Identities = 96/96 (100%), Positives = 96/96 (100%)
Query: 1 MTAPARRSRSLRPGMWSPKEWWEPQPGRDAAAARARSPYPGHLWKPAHLLHQPFPNTVVP 60
MTAPARRSRSLRPGMWSPKEWWEPQPGRDAAAARARSPYPGHLWKPAHLLHQPFPNTVVP
Sbjct: 1 MTAPARRSRSLRPGMWSPKEWWEPQPGRDAAAARARSPYPGHLWKPAHLLHQPFPNTVVP 60
Query: 61 PLPSLLKNRIVWGSGIFWTPGTPIRLPLVPLLQSNE 96
PLPSLLKNRIVWGSGIFWTPGTPIRLPLVPLLQSNE
Sbjct: 61 PLPSLLKNRIVWGSGIFWTPGTPIRLPLVPLLQSNE 96
>gi|239749889 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 120
Score = 212 bits (540), Expect = 4e-56
Identities = 96/96 (100%), Positives = 96/96 (100%)
Query: 1 MTAPARRSRSLRPGMWSPKEWWEPQPGRDAAAARARSPYPGHLWKPAHLLHQPFPNTVVP 60
MTAPARRSRSLRPGMWSPKEWWEPQPGRDAAAARARSPYPGHLWKPAHLLHQPFPNTVVP
Sbjct: 1 MTAPARRSRSLRPGMWSPKEWWEPQPGRDAAAARARSPYPGHLWKPAHLLHQPFPNTVVP 60
Query: 61 PLPSLLKNRIVWGSGIFWTPGTPIRLPLVPLLQSNE 96
PLPSLLKNRIVWGSGIFWTPGTPIRLPLVPLLQSNE
Sbjct: 61 PLPSLLKNRIVWGSGIFWTPGTPIRLPLVPLLQSNE 96
>gi|239744191 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 120
Score = 212 bits (540), Expect = 4e-56
Identities = 96/96 (100%), Positives = 96/96 (100%)
Query: 1 MTAPARRSRSLRPGMWSPKEWWEPQPGRDAAAARARSPYPGHLWKPAHLLHQPFPNTVVP 60
MTAPARRSRSLRPGMWSPKEWWEPQPGRDAAAARARSPYPGHLWKPAHLLHQPFPNTVVP
Sbjct: 1 MTAPARRSRSLRPGMWSPKEWWEPQPGRDAAAARARSPYPGHLWKPAHLLHQPFPNTVVP 60
Query: 61 PLPSLLKNRIVWGSGIFWTPGTPIRLPLVPLLQSNE 96
PLPSLLKNRIVWGSGIFWTPGTPIRLPLVPLLQSNE
Sbjct: 61 PLPSLLKNRIVWGSGIFWTPGTPIRLPLVPLLQSNE 96
>gi|52632381 melanoma antigen family D, 1 isoform a [Homo sapiens]
Length = 834
Score = 33.5 bits (75), Expect = 0.037
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 13 PGMWSPKEWWEPQPGRDAAAARARSPYPGHLWKPAHLLHQPFPNTVVPPLPSLLKNRIVW 72
P W W+ Q R AR +SP P PA + N V+ P P + +N ++W
Sbjct: 355 PLAWQNPSGWQNQTARQTPPAR-QSP-PARQTPPAWQNPVAWQNPVIWPNPVIWQNPVIW 412
Query: 73 GSGIFWTPG 81
+ I W PG
Sbjct: 413 PNPIVW-PG 420
>gi|52632379 melanoma antigen family D, 1 isoform b [Homo sapiens]
Length = 778
Score = 33.5 bits (75), Expect = 0.037
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 13 PGMWSPKEWWEPQPGRDAAAARARSPYPGHLWKPAHLLHQPFPNTVVPPLPSLLKNRIVW 72
P W W+ Q R AR +SP P PA + N V+ P P + +N ++W
Sbjct: 299 PLAWQNPSGWQNQTARQTPPAR-QSP-PARQTPPAWQNPVAWQNPVIWPNPVIWQNPVIW 356
Query: 73 GSGIFWTPG 81
+ I W PG
Sbjct: 357 PNPIVW-PG 364
>gi|52632377 melanoma antigen family D, 1 isoform b [Homo sapiens]
Length = 778
Score = 33.5 bits (75), Expect = 0.037
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 13 PGMWSPKEWWEPQPGRDAAAARARSPYPGHLWKPAHLLHQPFPNTVVPPLPSLLKNRIVW 72
P W W+ Q R AR +SP P PA + N V+ P P + +N ++W
Sbjct: 299 PLAWQNPSGWQNQTARQTPPAR-QSP-PARQTPPAWQNPVAWQNPVIWPNPVIWQNPVIW 356
Query: 73 GSGIFWTPG 81
+ I W PG
Sbjct: 357 PNPIVW-PG 364
>gi|40068065 hypothetical protein LOC54058 [Homo sapiens]
Length = 322
Score = 30.8 bits (68), Expect = 0.24
Identities = 24/75 (32%), Positives = 29/75 (38%), Gaps = 16/75 (21%)
Query: 9 RSLRPGMWSPKEWWEPQPGRDAAAARARSPYPGHLWKPAHLLHQPFPNTVVPPLPSLLKN 68
++L P + P P R AAR R P H H + P TV+ P PSL
Sbjct: 264 KALPPALQDPPH----VPPRVPRAARPRLPAVHHHHHHHHAVWPPGAATVLQPAPSL--- 316
Query: 69 RIVWGSGIFWTPGTP 83
WTPG P
Sbjct: 317 ---------WTPGPP 322
>gi|7705983 coatomer protein complex, subunit zeta 2 [Homo
sapiens]
Length = 210
Score = 30.0 bits (66), Expect = 0.41
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 15 MWSPKEWWEPQPGRDAAAARARSPYP 40
M P+ W P PG AAAA+A P P
Sbjct: 1 MQRPEAWPRPHPGEGAAAAQAGGPAP 26
>gi|4559408 colony stimulating factor 2 receptor, beta precursor
[Homo sapiens]
Length = 897
Score = 29.6 bits (65), Expect = 0.53
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 3 APARRSRSLRPGMWSPKEWWEPQPGRDA 30
AP R S RP WSP+ W+ QPG +A
Sbjct: 217 APGSRL-SGRPSKWSPEVCWDSQPGDEA 243
>gi|239745655 PREDICTED: family with sequence similarity 157, member
C [Homo sapiens]
Length = 387
Score = 29.6 bits (65), Expect = 0.53
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Query: 34 RARSPYPGHLWKPAHLLHQ----PFPNTVVPPLPSLLKNRIVWGSGIFWTP 80
RA+ P P L L + P+P T PP P LL+N WGS F P
Sbjct: 246 RAQPPPPQDLLGRRRWLSRNTWGPWPGTTQPPSPQLLRND--WGSCGFMVP 294
>gi|223646109 family with sequence similarity 157, member A [Homo
sapiens]
Length = 383
Score = 29.3 bits (64), Expect = 0.70
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 53 PFPNTVVPPLPSLLKNRIVWGSGIFWTP 80
P+P T PP P LL+N WGS F P
Sbjct: 265 PWPGTTQPPSPQLLRND--WGSCGFMVP 290
>gi|238624167 SEC14p-like protein TAP3 isoform b [Homo sapiens]
Length = 360
Score = 29.3 bits (64), Expect = 0.70
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 42 HLWKPAHLLHQPFPNTVVPPLPSLLKNRIV 71
HLWKPA ++Q F + + P LKN IV
Sbjct: 162 HLWKPAVEVYQQFFSILEANYPETLKNLIV 191
>gi|28376621 SEC14p-like protein TAP3 isoform a [Homo sapiens]
Length = 406
Score = 29.3 bits (64), Expect = 0.70
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 42 HLWKPAHLLHQPFPNTVVPPLPSLLKNRIV 71
HLWKPA ++Q F + + P LKN IV
Sbjct: 162 HLWKPAVEVYQQFFSILEANYPETLKNLIV 191
>gi|169210554 PREDICTED: FLJ44904 protein [Homo sapiens]
Length = 196
Score = 29.3 bits (64), Expect = 0.70
Identities = 23/87 (26%), Positives = 31/87 (35%), Gaps = 8/87 (9%)
Query: 1 MTAPARRSRSLRPGMWSPKEWWEPQPGRDAAAARARSPYPGHLWKPAHLLHQPFPNTVVP 60
++ P +R+R W P P A + SP P H +PA Q P V
Sbjct: 61 LSPPGKRARG-----WRESRGHGPHPTVSAGRPQHSSPSPRHTTRPA-APRQALPG--VH 112
Query: 61 PLPSLLKNRIVWGSGIFWTPGTPIRLP 87
PL + WG W + LP
Sbjct: 113 PLRRQVGEETCWGGAQAWAARPFLSLP 139
>gi|239743047 PREDICTED: similar to family with sequence similarity
157, member B [Homo sapiens]
Length = 384
Score = 29.3 bits (64), Expect = 0.70
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 53 PFPNTVVPPLPSLLKNRIVWGSGIFWTP 80
P+P T PP P LL+N WGS F P
Sbjct: 266 PWPGTTQPPSPQLLRND--WGSCGFMVP 291
>gi|223646111 family with sequence similarity 157, member B [Homo
sapiens]
Length = 384
Score = 29.3 bits (64), Expect = 0.70
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 53 PFPNTVVPPLPSLLKNRIVWGSGIFWTP 80
P+P T PP P LL+N WGS F P
Sbjct: 266 PWPGTTQPPSPQLLRND--WGSCGFMVP 291
>gi|239740948 PREDICTED: hypothetical protein LOC644246 [Homo
sapiens]
Length = 328
Score = 28.9 bits (63), Expect = 0.91
Identities = 16/44 (36%), Positives = 18/44 (40%)
Query: 18 PKEWWEPQPGRDAAAARARSPYPGHLWKPAHLLHQPFPNTVVPP 61
P+ W PQPGR+ A A S H QP P PP
Sbjct: 134 PEHGWRPQPGREGGRAGAESETAPPPRTNKHRRLQPEPAPRPPP 177
>gi|169209664 PREDICTED: hypothetical protein FLJ39639 [Homo
sapiens]
Length = 284
Score = 28.1 bits (61), Expect = 1.6
Identities = 26/94 (27%), Positives = 34/94 (36%), Gaps = 14/94 (14%)
Query: 7 RSRSLRPGMWSPKEWWEPQPGRDAAAARARSPYPGHLWKPAHLLHQPFPNTVVPPLPSLL 66
R+R LRP R A+ R P P QP P +PP P
Sbjct: 85 RNRQLRPRTSPKPRAATGTTVRGASVKRTGGPAPA----------QPSPPGPLPPTPHGP 134
Query: 67 KNRIVWGSGIFWTPGTPIRLPLVPLLQSNEVCFG 100
R G+ +PG+P+R PL E +G
Sbjct: 135 HARAETGA----SPGSPVRQPLPGPAPQREAAWG 164
>gi|113426298 PREDICTED: hypothetical protein FLJ39639 [Homo
sapiens]
Length = 284
Score = 28.1 bits (61), Expect = 1.6
Identities = 26/94 (27%), Positives = 34/94 (36%), Gaps = 14/94 (14%)
Query: 7 RSRSLRPGMWSPKEWWEPQPGRDAAAARARSPYPGHLWKPAHLLHQPFPNTVVPPLPSLL 66
R+R LRP R A+ R P P QP P +PP P
Sbjct: 85 RNRQLRPRTSPKPRAATGTTVRGASVKRTGGPAPA----------QPSPPGPLPPTPHGP 134
Query: 67 KNRIVWGSGIFWTPGTPIRLPLVPLLQSNEVCFG 100
R G+ +PG+P+R PL E +G
Sbjct: 135 HARAETGA----SPGSPVRQPLPGPAPQREAAWG 164
>gi|113425870 PREDICTED: hypothetical protein LOC283876 [Homo
sapiens]
Length = 284
Score = 28.1 bits (61), Expect = 1.6
Identities = 26/94 (27%), Positives = 34/94 (36%), Gaps = 14/94 (14%)
Query: 7 RSRSLRPGMWSPKEWWEPQPGRDAAAARARSPYPGHLWKPAHLLHQPFPNTVVPPLPSLL 66
R+R LRP R A+ R P P QP P +PP P
Sbjct: 85 RNRQLRPRTSPKPRAATGTTVRGASVKRTGGPAPA----------QPSPPGPLPPTPHGP 134
Query: 67 KNRIVWGSGIFWTPGTPIRLPLVPLLQSNEVCFG 100
R G+ +PG+P+R PL E +G
Sbjct: 135 HARAETGA----SPGSPVRQPLPGPAPQREAAWG 164
>gi|228008410 BEN domain containing 4 isoform b [Homo sapiens]
Length = 441
Score = 28.1 bits (61), Expect = 1.6
Identities = 24/76 (31%), Positives = 31/76 (40%), Gaps = 10/76 (13%)
Query: 13 PGMWSPKEWWEPQPGRDAAAARARSP------YPGHLWKPAHLLHQPFPNTVVPPLPSLL 66
P + + + P PGR AAAA + SP GHL PA QP P + S
Sbjct: 77 PQQFQAQSSYPPGPGRAAAAASSSSPSCTPATSQGHLRTPA----QPPPASPAASSSSSF 132
Query: 67 KNRIVWGSGIFWTPGT 82
+ +G G GT
Sbjct: 133 AAVVRYGPGAAAAAGT 148
>gi|148762950 BEN domain containing 4 isoform a [Homo sapiens]
Length = 534
Score = 28.1 bits (61), Expect = 1.6
Identities = 24/76 (31%), Positives = 31/76 (40%), Gaps = 10/76 (13%)
Query: 13 PGMWSPKEWWEPQPGRDAAAARARSP------YPGHLWKPAHLLHQPFPNTVVPPLPSLL 66
P + + + P PGR AAAA + SP GHL PA QP P + S
Sbjct: 77 PQQFQAQSSYPPGPGRAAAAASSSSPSCTPATSQGHLRTPA----QPPPASPAASSSSSF 132
Query: 67 KNRIVWGSGIFWTPGT 82
+ +G G GT
Sbjct: 133 AAVVRYGPGAAAAAGT 148
>gi|239741653 PREDICTED: hypothetical protein XP_002342271 [Homo
sapiens]
Length = 636
Score = 27.7 bits (60), Expect = 2.0
Identities = 15/46 (32%), Positives = 16/46 (34%)
Query: 24 PQPGRDAAAARARSPYPGHLWKPAHLLHQPFPNTVVPPLPSLLKNR 69
P P A R P P P L P P PP+P L R
Sbjct: 446 PPPAAAAFCLRGFLPDPAFSPPPPRLFAPPAPRLFAPPVPRLFARR 491
>gi|21265070 mitochondrial ribosomal protein L2 [Homo sapiens]
Length = 305
Score = 27.7 bits (60), Expect = 2.0
Identities = 16/48 (33%), Positives = 22/48 (45%)
Query: 55 PNTVVPPLPSLLKNRIVWGSGIFWTPGTPIRLPLVPLLQSNEVCFGFV 102
P TV P PSL + +G+ P + LP P+L S + FV
Sbjct: 17 PPTVAAPAPSLFPAAQMMNNGLLQQPSALMLLPCRPVLTSVALNANFV 64
>gi|33469137 solute carrier family 35, member E2 [Homo sapiens]
Length = 266
Score = 27.7 bits (60), Expect = 2.0
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 12 RPGMWSPKEWWEPQPGRDAAAARARSPYP 40
RP +E + QPGR AAA+ RSP P
Sbjct: 197 RPSDREEREELQLQPGRGAAASDRRSPVP 225
>gi|213972621 ATPase type 13A2 isoform 3 [Homo sapiens]
Length = 1158
Score = 27.3 bits (59), Expect = 2.6
Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 9/45 (20%)
Query: 27 GRDAAAARARSP--------YPGHLWKPAHLLHQPFPNTVVPPLP 63
GR A AA AR P +P H W L HQ P+ PP P
Sbjct: 1066 GRAALAAAARRPPEVVQAHGHPRH-WNSLPLSHQLDPSPATPPPP 1109
>gi|57863314 vacuolar protein sorting 37C [Homo sapiens]
Length = 355
Score = 27.3 bits (59), Expect = 2.6
Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 11/60 (18%)
Query: 16 WSPKEWWEPQPGRDAAAARARSP-YP---GHLWKPAHLLHQPFPNT-------VVPPLPS 64
WSP+ P+PG A P YP G P + P+P T + P LPS
Sbjct: 260 WSPQRSMPPRPGYPGTPMGASGPGYPLRGGRAPSPGYPQQSPYPATGGKPPYPIQPQLPS 319
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.140 0.500
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,679,093
Number of Sequences: 37866
Number of extensions: 323415
Number of successful extensions: 1011
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 974
Number of HSP's gapped (non-prelim): 83
length of query: 103
length of database: 18,247,518
effective HSP length: 74
effective length of query: 29
effective length of database: 15,445,434
effective search space: 447917586
effective search space used: 447917586
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.