Search of human proteins with 239755394

Search of human proteins with 239755394

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239755394 PREDICTED: hypothetical protein [Homo sapiens]
         (217 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239755394 PREDICTED: hypothetical protein [Homo sapiens]           442   e-124
gi|239744215 PREDICTED: hypothetical protein [Homo sapiens]           442   e-124
gi|76781485 vascular endothelial growth factor A isoform f precu...    41   7e-04
gi|76781484 vascular endothelial growth factor A isoform e precu...    41   7e-04
gi|76781483 vascular endothelial growth factor A isoform d precu...    41   7e-04
gi|76781482 vascular endothelial growth factor A isoform c precu...    41   7e-04
gi|76781481 vascular endothelial growth factor A isoform b precu...    41   7e-04
gi|76781480 vascular endothelial growth factor A isoform a precu...    41   7e-04
gi|76781487 vascular endothelial growth factor A isoform g precu...    41   7e-04
gi|239752201 PREDICTED: hypothetical protein XP_002348147 [Homo ...    41   7e-04
gi|145199237 transcription elongation factor B polypeptide 3 bin...    41   7e-04
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]            40   0.002
gi|166235169 PRP38 pre-mRNA processing factor 38 (yeast) domain ...    38   0.008
gi|239752128 PREDICTED: hypothetical protein [Homo sapiens]            37   0.013
gi|55741709 RNA binding motif protein 25 [Homo sapiens]                37   0.017
gi|190014588 PC4 and SFRS1 interacting protein 1 isoform 2 [Homo...    36   0.029
gi|190014586 PC4 and SFRS1 interacting protein 1 isoform 1 [Homo...    36   0.029
gi|19923653 PC4 and SFRS1 interacting protein 1 isoform 2 [Homo ...    36   0.029
gi|169168202 PREDICTED: hypothetical protein [Homo sapiens]            36   0.029
gi|239748510 PREDICTED: hypothetical protein XP_002346712 [Homo ...    36   0.029
gi|116812577 LUC7-like 2 [Homo sapiens]                                36   0.029
gi|239754909 PREDICTED: hypothetical protein [Homo sapiens]            35   0.038
gi|169167967 PREDICTED: hypothetical protein [Homo sapiens]            35   0.049
gi|169167681 PREDICTED: hypothetical protein [Homo sapiens]            35   0.049
gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sap...    35   0.049
gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sap...    35   0.049
gi|4503247 ribosomal RNA processing 1 homolog [Homo sapiens]           35   0.049
gi|195976805 hypoxia up-regulated 1 precursor [Homo sapiens]           35   0.049
gi|5453832 hypoxia up-regulated 1 precursor [Homo sapiens]             35   0.049
gi|100816397 MYST histone acetyltransferase (monocytic leukemia)...    35   0.049

>gi|239755394 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 217

 Score =  442 bits (1136), Expect = e-124
 Identities = 217/217 (100%), Positives = 217/217 (100%)

Query: 1   MLGQQKALPPWAPAAPGPAQGVQRGGGAGVLLGLTASAVQKPGLGRACKEGRQRKSPLRT 60
           MLGQQKALPPWAPAAPGPAQGVQRGGGAGVLLGLTASAVQKPGLGRACKEGRQRKSPLRT
Sbjct: 1   MLGQQKALPPWAPAAPGPAQGVQRGGGAGVLLGLTASAVQKPGLGRACKEGRQRKSPLRT 60

Query: 61  LRSNQEEQEEEEDEQNGRRHQPGRKQGRAQARPARSPLRPAATACKGDDRGERKKGRRGN 120
           LRSNQEEQEEEEDEQNGRRHQPGRKQGRAQARPARSPLRPAATACKGDDRGERKKGRRGN
Sbjct: 61  LRSNQEEQEEEEDEQNGRRHQPGRKQGRAQARPARSPLRPAATACKGDDRGERKKGRRGN 120

Query: 121 PGTRSRRITSSLWASGRPKPSQLRERSGKKRNVVKPKSLGIVVLEMREGSTSAEDFWNLW 180
           PGTRSRRITSSLWASGRPKPSQLRERSGKKRNVVKPKSLGIVVLEMREGSTSAEDFWNLW
Sbjct: 121 PGTRSRRITSSLWASGRPKPSQLRERSGKKRNVVKPKSLGIVVLEMREGSTSAEDFWNLW 180

Query: 181 LRGAAGAHPRWDVKRRLLGSVVIREDVRRPGSRRAGR 217
           LRGAAGAHPRWDVKRRLLGSVVIREDVRRPGSRRAGR
Sbjct: 181 LRGAAGAHPRWDVKRRLLGSVVIREDVRRPGSRRAGR 217


>gi|239744215 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 217

 Score =  442 bits (1136), Expect = e-124
 Identities = 217/217 (100%), Positives = 217/217 (100%)

Query: 1   MLGQQKALPPWAPAAPGPAQGVQRGGGAGVLLGLTASAVQKPGLGRACKEGRQRKSPLRT 60
           MLGQQKALPPWAPAAPGPAQGVQRGGGAGVLLGLTASAVQKPGLGRACKEGRQRKSPLRT
Sbjct: 1   MLGQQKALPPWAPAAPGPAQGVQRGGGAGVLLGLTASAVQKPGLGRACKEGRQRKSPLRT 60

Query: 61  LRSNQEEQEEEEDEQNGRRHQPGRKQGRAQARPARSPLRPAATACKGDDRGERKKGRRGN 120
           LRSNQEEQEEEEDEQNGRRHQPGRKQGRAQARPARSPLRPAATACKGDDRGERKKGRRGN
Sbjct: 61  LRSNQEEQEEEEDEQNGRRHQPGRKQGRAQARPARSPLRPAATACKGDDRGERKKGRRGN 120

Query: 121 PGTRSRRITSSLWASGRPKPSQLRERSGKKRNVVKPKSLGIVVLEMREGSTSAEDFWNLW 180
           PGTRSRRITSSLWASGRPKPSQLRERSGKKRNVVKPKSLGIVVLEMREGSTSAEDFWNLW
Sbjct: 121 PGTRSRRITSSLWASGRPKPSQLRERSGKKRNVVKPKSLGIVVLEMREGSTSAEDFWNLW 180

Query: 181 LRGAAGAHPRWDVKRRLLGSVVIREDVRRPGSRRAGR 217
           LRGAAGAHPRWDVKRRLLGSVVIREDVRRPGSRRAGR
Sbjct: 181 LRGAAGAHPRWDVKRRLLGSVVIREDVRRPGSRRAGR 217


>gi|76781485 vascular endothelial growth factor A isoform f
           precursor [Homo sapiens]
          Length = 327

 Score = 41.2 bits (95), Expect = 7e-04
 Identities = 40/147 (27%), Positives = 57/147 (38%), Gaps = 31/147 (21%)

Query: 16  PGPAQGVQRGGGAGVLLGL---------------TASAVQKPGLGRACKEGRQRKSPLRT 60
           P P  GV+  G  GV L L                A   +  G  R+   GR+   P   
Sbjct: 36  PAPGGGVEGVGARGVALKLFVQLLGCSRFGGAVVRAGEAEPSGAARSASSGREEPQP--- 92

Query: 61  LRSNQEEQEEEEDEQNGRR-----HQPGRKQGRA-----QARPARSPLRPAATACKGDDR 110
               + E+EEE++E+ G +      +PG   G A      A  AR+P   A  + +G   
Sbjct: 93  ---EEGEEEEEKEEERGPQWRLGARKPGSWTGEAAVCADSAPAARAPQALARASGRGGRV 149

Query: 111 GERKKGRRGNPGTRSRRITSSLWASGR 137
             R     G P + SRR ++S    GR
Sbjct: 150 ARRGAEESGPPHSPSRRGSASRAGPGR 176


>gi|76781484 vascular endothelial growth factor A isoform e
           precursor [Homo sapiens]
          Length = 354

 Score = 41.2 bits (95), Expect = 7e-04
 Identities = 40/147 (27%), Positives = 57/147 (38%), Gaps = 31/147 (21%)

Query: 16  PGPAQGVQRGGGAGVLLGL---------------TASAVQKPGLGRACKEGRQRKSPLRT 60
           P P  GV+  G  GV L L                A   +  G  R+   GR+   P   
Sbjct: 36  PAPGGGVEGVGARGVALKLFVQLLGCSRFGGAVVRAGEAEPSGAARSASSGREEPQP--- 92

Query: 61  LRSNQEEQEEEEDEQNGRR-----HQPGRKQGRA-----QARPARSPLRPAATACKGDDR 110
               + E+EEE++E+ G +      +PG   G A      A  AR+P   A  + +G   
Sbjct: 93  ---EEGEEEEEKEEERGPQWRLGARKPGSWTGEAAVCADSAPAARAPQALARASGRGGRV 149

Query: 111 GERKKGRRGNPGTRSRRITSSLWASGR 137
             R     G P + SRR ++S    GR
Sbjct: 150 ARRGAEESGPPHSPSRRGSASRAGPGR 176


>gi|76781483 vascular endothelial growth factor A isoform d
           precursor [Homo sapiens]
          Length = 371

 Score = 41.2 bits (95), Expect = 7e-04
 Identities = 40/147 (27%), Positives = 57/147 (38%), Gaps = 31/147 (21%)

Query: 16  PGPAQGVQRGGGAGVLLGL---------------TASAVQKPGLGRACKEGRQRKSPLRT 60
           P P  GV+  G  GV L L                A   +  G  R+   GR+   P   
Sbjct: 36  PAPGGGVEGVGARGVALKLFVQLLGCSRFGGAVVRAGEAEPSGAARSASSGREEPQP--- 92

Query: 61  LRSNQEEQEEEEDEQNGRR-----HQPGRKQGRA-----QARPARSPLRPAATACKGDDR 110
               + E+EEE++E+ G +      +PG   G A      A  AR+P   A  + +G   
Sbjct: 93  ---EEGEEEEEKEEERGPQWRLGARKPGSWTGEAAVCADSAPAARAPQALARASGRGGRV 149

Query: 111 GERKKGRRGNPGTRSRRITSSLWASGR 137
             R     G P + SRR ++S    GR
Sbjct: 150 ARRGAEESGPPHSPSRRGSASRAGPGR 176


>gi|76781482 vascular endothelial growth factor A isoform c
           precursor [Homo sapiens]
          Length = 389

 Score = 41.2 bits (95), Expect = 7e-04
 Identities = 40/147 (27%), Positives = 57/147 (38%), Gaps = 31/147 (21%)

Query: 16  PGPAQGVQRGGGAGVLLGL---------------TASAVQKPGLGRACKEGRQRKSPLRT 60
           P P  GV+  G  GV L L                A   +  G  R+   GR+   P   
Sbjct: 36  PAPGGGVEGVGARGVALKLFVQLLGCSRFGGAVVRAGEAEPSGAARSASSGREEPQP--- 92

Query: 61  LRSNQEEQEEEEDEQNGRR-----HQPGRKQGRA-----QARPARSPLRPAATACKGDDR 110
               + E+EEE++E+ G +      +PG   G A      A  AR+P   A  + +G   
Sbjct: 93  ---EEGEEEEEKEEERGPQWRLGARKPGSWTGEAAVCADSAPAARAPQALARASGRGGRV 149

Query: 111 GERKKGRRGNPGTRSRRITSSLWASGR 137
             R     G P + SRR ++S    GR
Sbjct: 150 ARRGAEESGPPHSPSRRGSASRAGPGR 176


>gi|76781481 vascular endothelial growth factor A isoform b
           precursor [Homo sapiens]
          Length = 395

 Score = 41.2 bits (95), Expect = 7e-04
 Identities = 40/147 (27%), Positives = 57/147 (38%), Gaps = 31/147 (21%)

Query: 16  PGPAQGVQRGGGAGVLLGL---------------TASAVQKPGLGRACKEGRQRKSPLRT 60
           P P  GV+  G  GV L L                A   +  G  R+   GR+   P   
Sbjct: 36  PAPGGGVEGVGARGVALKLFVQLLGCSRFGGAVVRAGEAEPSGAARSASSGREEPQP--- 92

Query: 61  LRSNQEEQEEEEDEQNGRR-----HQPGRKQGRA-----QARPARSPLRPAATACKGDDR 110
               + E+EEE++E+ G +      +PG   G A      A  AR+P   A  + +G   
Sbjct: 93  ---EEGEEEEEKEEERGPQWRLGARKPGSWTGEAAVCADSAPAARAPQALARASGRGGRV 149

Query: 111 GERKKGRRGNPGTRSRRITSSLWASGR 137
             R     G P + SRR ++S    GR
Sbjct: 150 ARRGAEESGPPHSPSRRGSASRAGPGR 176


>gi|76781480 vascular endothelial growth factor A isoform a
           precursor [Homo sapiens]
          Length = 412

 Score = 41.2 bits (95), Expect = 7e-04
 Identities = 40/147 (27%), Positives = 57/147 (38%), Gaps = 31/147 (21%)

Query: 16  PGPAQGVQRGGGAGVLLGL---------------TASAVQKPGLGRACKEGRQRKSPLRT 60
           P P  GV+  G  GV L L                A   +  G  R+   GR+   P   
Sbjct: 36  PAPGGGVEGVGARGVALKLFVQLLGCSRFGGAVVRAGEAEPSGAARSASSGREEPQP--- 92

Query: 61  LRSNQEEQEEEEDEQNGRR-----HQPGRKQGRA-----QARPARSPLRPAATACKGDDR 110
               + E+EEE++E+ G +      +PG   G A      A  AR+P   A  + +G   
Sbjct: 93  ---EEGEEEEEKEEERGPQWRLGARKPGSWTGEAAVCADSAPAARAPQALARASGRGGRV 149

Query: 111 GERKKGRRGNPGTRSRRITSSLWASGR 137
             R     G P + SRR ++S    GR
Sbjct: 150 ARRGAEESGPPHSPSRRGSASRAGPGR 176


>gi|76781487 vascular endothelial growth factor A isoform g
           precursor [Homo sapiens]
          Length = 371

 Score = 41.2 bits (95), Expect = 7e-04
 Identities = 40/147 (27%), Positives = 57/147 (38%), Gaps = 31/147 (21%)

Query: 16  PGPAQGVQRGGGAGVLLGL---------------TASAVQKPGLGRACKEGRQRKSPLRT 60
           P P  GV+  G  GV L L                A   +  G  R+   GR+   P   
Sbjct: 36  PAPGGGVEGVGARGVALKLFVQLLGCSRFGGAVVRAGEAEPSGAARSASSGREEPQP--- 92

Query: 61  LRSNQEEQEEEEDEQNGRR-----HQPGRKQGRA-----QARPARSPLRPAATACKGDDR 110
               + E+EEE++E+ G +      +PG   G A      A  AR+P   A  + +G   
Sbjct: 93  ---EEGEEEEEKEEERGPQWRLGARKPGSWTGEAAVCADSAPAARAPQALARASGRGGRV 149

Query: 111 GERKKGRRGNPGTRSRRITSSLWASGR 137
             R     G P + SRR ++S    GR
Sbjct: 150 ARRGAEESGPPHSPSRRGSASRAGPGR 176


>gi|239752201 PREDICTED: hypothetical protein XP_002348147 [Homo
           sapiens]
          Length = 935

 Score = 41.2 bits (95), Expect = 7e-04
 Identities = 41/159 (25%), Positives = 57/159 (35%), Gaps = 32/159 (20%)

Query: 3   GQQKALPPWAPAAPGPAQGVQRGGGAGVLLGLTASAVQKPGLGRACKEGRQRKSPLRTLR 62
           GQ     PW+P APG ++   RG G             +PG G     G +R  P R  R
Sbjct: 742 GQTDRARPWSPPAPGESRDRARGAG-------------QPGPGSG--SGAERAGPERRAR 786

Query: 63  SNQEEQEEEEDEQNGR------------RHQPGRKQGRAQARPARSPLRPAATACKGDDR 110
             Q     ++   + R            R + GR+  RA A    +  R A+ A KG+ R
Sbjct: 787 DTQTRTRRDKLTDSARGGRARLTAGRRVRRESGRR--RAGATSQGAIRRAASRARKGESR 844

Query: 111 ---GERKKGRRGNPGTRSRRITSSLWASGRPKPSQLRER 146
                   GR   P   + R     W     +PS+   R
Sbjct: 845 RPLPANSAGRPALPSPAAARSARGSWGLRASRPSRAAPR 883



 Score = 28.1 bits (61), Expect = 6.0
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 10/68 (14%)

Query: 39  VQKPGLG--RACKEGRQRKSPLRT-----LRSNQEEQEEEEDEQNGRRHQPGRKQGRAQA 91
           V   GLG  R C    +R++P R      L+   EE +  E+E      +PG K+GR + 
Sbjct: 346 VHDAGLGGHRGCSATTRRRAPRRRHPWAGLQVTVEESDTPEEEAE---KEPGDKEGRGED 402

Query: 92  RPARSPLR 99
               +P R
Sbjct: 403 HEHVAPAR 410


>gi|145199237 transcription elongation factor B polypeptide 3
           binding protein 1 [Homo sapiens]
          Length = 1221

 Score = 41.2 bits (95), Expect = 7e-04
 Identities = 41/145 (28%), Positives = 60/145 (41%), Gaps = 13/145 (8%)

Query: 9   PPWAPAAPGPAQGVQRGG--GAGVLLGLTASAVQKPGLGRACKEGRQRKSPLRTLRSNQE 66
           PP  PA+P   Q  Q GG    G        A   P    +CK+G Q K   +     + 
Sbjct: 352 PPAKPASPAQVQSSQDGGCPKEGKPKKKKTGAPPAP----SCKDGAQGKDKTKDKGRGRP 407

Query: 67  EQEEEEDEQNGRRHQPGRKQGRAQARPAR-SPLRPAATACKGDDRGERKKGRRGNPGTRS 125
            ++   D++  +   P RK  R +    + S   P AT+ KG  R +R   RR +P +  
Sbjct: 408 VEKPRADKKGPQASSPRRKAERPEGTKKKPSSATPVATSGKG--RPDR-PARRPSPTSGD 464

Query: 126 RRITSSLWASGRPKPSQLRERSGKK 150
            R  +     G P+P QL +R   K
Sbjct: 465 SRPAA---GRGPPRPLQLPDRKSTK 486


>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 819

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 50/185 (27%), Positives = 70/185 (37%), Gaps = 28/185 (15%)

Query: 14  AAPGPAQGVQRGGGAGVLLGLTASAVQKPGLGRACKEGRQRKSPLRTLRSNQEEQEEEED 73
           A    A G +RGGG     G   +AV   G+    K+ R+ K P R   S    +     
Sbjct: 332 ATKAAAAGTKRGGG-----GQQKAAVV--GVKSRKKQRRRGKKPRRQKASAAGAKSRGGG 384

Query: 74  EQNG----RRHQPGRKQGRAQARPARSPLRPAATACKGDDRGERKKGRRGNPGTRSRRIT 129
           ++ G    +R   GRK+ R Q    R+   PAA    G   G +K  RRG    +SR   
Sbjct: 385 DKKGLREAKRRGDGRKKPRWQNPRRRAQKAPAAKPRGG---GSKKPRRRGPKAAKSRGGK 441

Query: 130 SSLWASGRPK-----------PSQLRERSGKKRNVVKPKSLGIVVLEMREGSTSAEDFWN 178
           S      +P+            +    R  KK+   K  + G    + R G   +    N
Sbjct: 442 SRSGGGKKPRRRGQKARQKAAEAGAESRGDKKQGRQKASAAG---TKSRGGGLKSHSGKN 498

Query: 179 LWLRG 183
           LW RG
Sbjct: 499 LWRRG 503



 Score = 32.0 bits (71), Expect = 0.41
 Identities = 46/174 (26%), Positives = 64/174 (36%), Gaps = 23/174 (13%)

Query: 9   PPWAPAAPGPAQGVQRGGGAGVLLGLTASAVQKPGLGRACKEGRQRKSPLRTLRSNQEEQ 68
           P W  AA G  +     GG          A ++   G   K    RK P R  R  ++  
Sbjct: 595 PGWQKAAAGVTKSRSGDGGK--------KAWRQKAAGTGAKS---RKKPWR--RGQKDAA 641

Query: 69  EEEEDEQNGRRHQ-PGRKQGRAQARPARSPLRPAATACKGDDRGERKKGRR-----GNPG 122
             E+    G   +  G KQ R Q +PA +    +A A  G +   RKK RR        G
Sbjct: 642 AAEKAWATGATSRGSGGKQPRWQ-KPAAAGSESSAAAAVGQEAEARKKPRRRRAKSRGDG 700

Query: 123 TRSRRITSSLWASGRPKPSQLRERSG---KKRNVVKPKSLGIVVLEMREGSTSA 173
            ++  +  + W     KP   + R G   K R     KS G    + R G  +A
Sbjct: 701 GQNAAVGINPWQRRGKKPRLGKSRGGGGAKSRGSGGAKSRGSGGAKSRSGKKAA 754



 Score = 30.4 bits (67), Expect = 1.2
 Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 9/90 (10%)

Query: 75  QNGRRHQPGRKQGRAQARPARSPLRPAATACKGDDRGERKK----GRRGNPGTRSRRITS 130
           + G+    G K+ R + + AR     A    +GD +  R+K    G +   G        
Sbjct: 438 RGGKSRSGGGKKPRRRGQKARQKAAEAGAESRGDKKQGRQKASAAGTKSRGGGLKSHSGK 497

Query: 131 SLWASGRPKPSQLRERSGKKRNVVKPKSLG 160
           +LW  G     Q  E +G+K      KS G
Sbjct: 498 NLWRRG-----QKAEAAGEKATAAGAKSRG 522


>gi|166235169 PRP38 pre-mRNA processing factor 38 (yeast) domain
           containing B [Homo sapiens]
          Length = 546

 Score = 37.7 bits (86), Expect = 0.008
 Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 24/110 (21%)

Query: 49  KEGRQRKSPLRTLRSNQEEQEEEEDEQNGRRHQPGRKQGRAQARPARSPLRPAATACKGD 108
           +E  + +S  +  R   EE++ +ED+ + RRH+  ++  + + + +RS  R         
Sbjct: 382 RERSRERSKEQRSRGEVEEKKHKEDKDD-RRHRDDKRDSKKEKKHSRSRSR--------- 431

Query: 109 DRGERKKGRRGNPGTRSRRITSSLWASGRPKPSQLRERSGKKRNVVKPKS 158
           +R  R + R  N G RSR              S+ +E+S K +N  K KS
Sbjct: 432 ERKHRSRSRSRNAGKRSR--------------SRSKEKSSKHKNESKEKS 467


>gi|239752128 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 149

 Score = 37.0 bits (84), Expect = 0.013
 Identities = 41/142 (28%), Positives = 58/142 (40%), Gaps = 19/142 (13%)

Query: 9   PPWAPAAPGPAQGVQRGGGAGVLLGLTASAVQKPGLGRACKEGRQRKSPL--RTLRSNQE 66
           P W+  AP  A+G     G  + LG   S   + G G A K   Q    +  R L++ Q 
Sbjct: 10  PRWSREAPPEARG-----GWTMWLGRRESRGCRQGRGLAMKPEDQGLVAVTARGLQAAQS 64

Query: 67  EQEEEEDEQNGRRH-QPGRKQ--------GRAQARPARSPLRPAATACKGDDRGERKKGR 117
             +E   +   RR  QPG +Q        GRA+A P  +       + +     ERK+GR
Sbjct: 65  ISDEGSSQWRCRRQRQPGSEQRGSSPSSNGRARAPPQTTGRALVTPSARAAPTSERKRGR 124

Query: 118 RGN---PGTRSRRITSSLWASG 136
             +    GTRS       W +G
Sbjct: 125 PHSLWATGTRSDSAALPAWMAG 146


>gi|55741709 RNA binding motif protein 25 [Homo sapiens]
          Length = 843

 Score = 36.6 bits (83), Expect = 0.017
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 44  LGRACKEGRQRKSPLRTLRSNQEEQEEEEDEQNGRRHQPGRKQGRAQARPARSP-LRPAA 102
           L R  +E  +R+ P        EE+EEE+ E+  +R +P  ++   + +P   P LRP +
Sbjct: 562 LQRMEQEAERRRQPQIKQEPESEEEEEEKQEKEEKREEPMEEEEEPEQKPCLKPTLRPIS 621

Query: 103 TA 104
           +A
Sbjct: 622 SA 623


>gi|190014588 PC4 and SFRS1 interacting protein 1 isoform 2 [Homo
           sapiens]
          Length = 530

 Score = 35.8 bits (81), Expect = 0.029
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 49  KEGRQRKSPLRTLRSNQEEQEEEEDEQNGRRHQPGRKQGRAQARPARSPLRPAATACKGD 108
           K+G++ K P +  + ++E Q+EE+      R +P +K+G+ +    R  L         D
Sbjct: 219 KKGQEEKQPKKQPKKDEEGQKEEDKP----RKEPDKKEGKKEVESKRKNLAKTGVTSTSD 274

Query: 109 --DRGERKKGRRGNPGTRS 125
             + G+ ++G +   G R+
Sbjct: 275 SEEEGDDQEGEKKRKGGRN 293


>gi|190014586 PC4 and SFRS1 interacting protein 1 isoform 1 [Homo
           sapiens]
          Length = 333

 Score = 35.8 bits (81), Expect = 0.029
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 49  KEGRQRKSPLRTLRSNQEEQEEEEDEQNGRRHQPGRKQGRAQARPARSPLRPAATACKGD 108
           K+G++ K P +  + ++E Q+EE+      R +P +K+G+ +    R  L         D
Sbjct: 219 KKGQEEKQPKKQPKKDEEGQKEEDKP----RKEPDKKEGKKEVESKRKNLAKTGVTSTSD 274

Query: 109 --DRGERKKGRRGNPGTRS 125
             + G+ ++G +   G R+
Sbjct: 275 SEEEGDDQEGEKKRKGGRN 293


>gi|19923653 PC4 and SFRS1 interacting protein 1 isoform 2 [Homo
           sapiens]
          Length = 530

 Score = 35.8 bits (81), Expect = 0.029
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 49  KEGRQRKSPLRTLRSNQEEQEEEEDEQNGRRHQPGRKQGRAQARPARSPLRPAATACKGD 108
           K+G++ K P +  + ++E Q+EE+      R +P +K+G+ +    R  L         D
Sbjct: 219 KKGQEEKQPKKQPKKDEEGQKEEDKP----RKEPDKKEGKKEVESKRKNLAKTGVTSTSD 274

Query: 109 --DRGERKKGRRGNPGTRS 125
             + G+ ++G +   G R+
Sbjct: 275 SEEEGDDQEGEKKRKGGRN 293


>gi|169168202 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 460

 Score = 35.8 bits (81), Expect = 0.029
 Identities = 39/140 (27%), Positives = 54/140 (38%), Gaps = 10/140 (7%)

Query: 9   PPWAPAAPGPAQGVQRGGGAGVLLGLTASAVQKPGLGRACKEGRQRKSPLRTLRSNQEEQ 68
           PP   +AP P+ G +RG   G   G   +    PGL    +E R  +S  RT  +++   
Sbjct: 152 PPGKTSAPRPSPGGRRGRPLGAARGTGLN----PGLSPRLQEPRGHQSARRTDTASRAGW 207

Query: 69  EEEEDEQNGRRHQPGRKQGRAQARPARSPLRPAATACKGDDRGERKKGRRGNPGTRSRRI 128
                    RR   G  +G  + RP      P A+  KG      ++      G RSR  
Sbjct: 208 ATR--RAPSRRRNFGAPRGSRRLRPDAGKF-PEASGGKGQRAAGAERVLNNGRGPRSR-- 262

Query: 129 TSSLWASGRPKPSQLRERSG 148
                A G   P   RER+G
Sbjct: 263 -LPGLAGGVEPPGWSRERAG 281


>gi|239748510 PREDICTED: hypothetical protein XP_002346712 [Homo
           sapiens]
          Length = 336

 Score = 35.8 bits (81), Expect = 0.029
 Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 4/86 (4%)

Query: 18  PAQGVQRGGGAGVLLGLTASAVQKPGLGRACKEGRQRKSPLRTLRSNQEEQEEEEDEQNG 77
           P    QRG G  +L+ L A+ VQ+P LGR     RQ + P+   R   +  + +   +  
Sbjct: 184 PGLAPQRGRGGLLLVVLHAATVQRPRLGRG--PSRQPRGPVGVCR--PQVAQRQRLARVC 239

Query: 78  RRHQPGRKQGRAQARPARSPLRPAAT 103
            R  PG ++   ++ PA  PL+  AT
Sbjct: 240 VRSLPGNRRLATRSCPAAFPLQGGAT 265


>gi|116812577 LUC7-like 2 [Homo sapiens]
          Length = 392

 Score = 35.8 bits (81), Expect = 0.029
 Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 4/129 (3%)

Query: 27  GAGVLLGLTASAVQKPGLGRACKEGRQRKSPLRTLRSNQEEQEEEEDEQNGRRHQPGRKQ 86
           G  + LG      +   L R   E +++++  R  R  + E+EE E  +  R H    K+
Sbjct: 211 GGKLHLGFIEIREKLEELKRVVAEKQEKRNQERLKRREEREREEREKLRRSRSHSKNPKR 270

Query: 87  GRA---QARPARSPLRPAATACKGDDRGERKKGR-RGNPGTRSRRITSSLWASGRPKPSQ 142
            R+   +   +RS  R      +   R +R + R R +  +RSR    S  +S      +
Sbjct: 271 SRSREHRRHRSRSMSRERKRRTRSKSREKRHRHRSRSSSRSRSRSHQRSRHSSRDRSRER 330

Query: 143 LRERSGKKR 151
            + RS K+R
Sbjct: 331 SKRRSSKER 339


>gi|239754909 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 245

 Score = 35.4 bits (80), Expect = 0.038
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 6/88 (6%)

Query: 40  QKPGLGRACKEGRQRKSPLRTLRSNQEEQEEEEDEQNGRRHQPGRKQGRAQARPARSPLR 99
           +K   GR  KEG++R+      R  ++E+E +++E+   R +  RK+   +    +   R
Sbjct: 119 EKKERGRTSKEGKERERKEERKREERKERERKKEEREKERERKERKKRERKQVGEKEEER 178

Query: 100 PAATACKGDDRGERKKGRRGNPGTRSRR 127
                 K  +R ERKK  R     +  R
Sbjct: 179 ------KEKERKERKKRERNRKERKKER 200



 Score = 33.5 bits (75), Expect = 0.14
 Identities = 31/135 (22%), Positives = 56/135 (41%), Gaps = 18/135 (13%)

Query: 49  KEGR-----QRKSPLRTLRSNQEEQEEEEDEQNGRRHQPGRKQGRAQARPARSPLRPAAT 103
           KEG+     +RK   R     + E+E+E   + G++ + G ++   + R  R   R    
Sbjct: 49  KEGKKERESERKKERREREKRKREREKERKRERGKKEKKGERKKEERERKKR---RREKE 105

Query: 104 ACKGDDRGERKKGRRGNPGTRSR----------RITSSLWASGRPKPSQLRERSGKKRNV 153
             +G+++ +RKK  +   G  S+          R         R K  + +ER  K+R  
Sbjct: 106 NKEGEEKEKRKKKEKKERGRTSKEGKERERKEERKREERKERERKKEEREKERERKERKK 165

Query: 154 VKPKSLGIVVLEMRE 168
            + K +G    E +E
Sbjct: 166 RERKQVGEKEEERKE 180



 Score = 33.1 bits (74), Expect = 0.19
 Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 12/119 (10%)

Query: 40  QKPGLGRACKEGRQRKSPLRTLRSNQEEQEE----EEDEQNGRRHQPGRKQGRAQAR--- 92
           +K   G   KE R+RK   R   + + E++E    +E ++ GR  + G+++ R + R   
Sbjct: 83  KKEKKGERKKEERERKKRRREKENKEGEEKEKRKKKEKKERGRTSKEGKERERKEERKRE 142

Query: 93  PARSPLRPAATACKGDDRGERKKGRRGNPGTRSRRITSSLWASGRPKPSQLRERSGKKR 151
             +   R      K  +R ERKK  R   G +              K  + RER+ K+R
Sbjct: 143 ERKERERKKEEREKERERKERKKRERKQVGEKEEERKEK-----ERKERKKRERNRKER 196



 Score = 30.8 bits (68), Expect = 0.92
 Identities = 23/113 (20%), Positives = 51/113 (45%), Gaps = 20/113 (17%)

Query: 45  GRACKEGRQRKSPLRTLRSNQEEQEEEEDEQNGRRHQPGRKQGRAQARPARSPLRPAATA 104
           G+  K+G ++K      +  +E++ +E +E+  R+ +  +++GR              T+
Sbjct: 82  GKKEKKGERKKEERERKKRRREKENKEGEEKEKRKKKEKKERGR--------------TS 127

Query: 105 CKGDDRGERKKGRRGNPGTRSRRITSSLWASGRPKPSQLRERSGKKRNVVKPK 157
            +G +R  +++ +R     R R+         R K  + +ER  ++R  V  K
Sbjct: 128 KEGKERERKEERKREERKERERK------KEEREKERERKERKKRERKQVGEK 174



 Score = 30.4 bits (67), Expect = 1.2
 Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 15/107 (14%)

Query: 50  EGRQRKSPLRTLRSNQEEQEEEEDEQNGRRHQPGRKQGRAQARPARSPLRPAATACKGDD 109
           E R+R+  + T +  ++E+E E  ++  RR +  RK+ R + R             K + 
Sbjct: 37  EIREREREIETRKEGKKERESERKKE--RREREKRKREREKERKRERG--------KKEK 86

Query: 110 RGERKKGRRGNPGTRSRRITSSLWASGRPKPSQLRER-----SGKKR 151
           +GERKK  R     R  +         + K  + +ER      GK+R
Sbjct: 87  KGERKKEERERKKRRREKENKEGEEKEKRKKKEKKERGRTSKEGKER 133



 Score = 30.0 bits (66), Expect = 1.6
 Identities = 16/72 (22%), Positives = 35/72 (48%)

Query: 49  KEGRQRKSPLRTLRSNQEEQEEEEDEQNGRRHQPGRKQGRAQARPARSPLRPAATACKGD 108
           +E ++RK   R     +EE+ +E++ +  ++ +  RK+ + +        R      K +
Sbjct: 158 RERKERKKRERKQVGEKEEERKEKERKERKKRERNRKERKKERERKERRERKKERKKKEE 217

Query: 109 DRGERKKGRRGN 120
            + ER+K R+ N
Sbjct: 218 RKKERQKDRQTN 229


>gi|169167967 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 460

 Score = 35.0 bits (79), Expect = 0.049
 Identities = 39/140 (27%), Positives = 54/140 (38%), Gaps = 10/140 (7%)

Query: 9   PPWAPAAPGPAQGVQRGGGAGVLLGLTASAVQKPGLGRACKEGRQRKSPLRTLRSNQEEQ 68
           PP   +AP P+ G +RG   G   G   +    PGL    +E R  +S  RT  +++   
Sbjct: 152 PPGKTSAPRPSPGGRRGRPLGAARGTGLN----PGLSPRLQEPRGHQSARRTDTASRAGW 207

Query: 69  EEEEDEQNGRRHQPGRKQGRAQARPARSPLRPAATACKGDDRGERKKGRRGNPGTRSRRI 128
                    RR   G  +G  + RP      P A+  KG      ++      G RSR  
Sbjct: 208 ATR--RAPSRRRNFGAPRGSRRLRPDAGKF-PEASGGKGQRAAGAERVLDNGRGPRSR-- 262

Query: 129 TSSLWASGRPKPSQLRERSG 148
                A G   P   RER+G
Sbjct: 263 -LPGLAGGVEPPGWSRERAG 281


>gi|169167681 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 460

 Score = 35.0 bits (79), Expect = 0.049
 Identities = 39/140 (27%), Positives = 54/140 (38%), Gaps = 10/140 (7%)

Query: 9   PPWAPAAPGPAQGVQRGGGAGVLLGLTASAVQKPGLGRACKEGRQRKSPLRTLRSNQEEQ 68
           PP   +AP P+ G +RG   G   G   +    PGL    +E R  +S  RT  +++   
Sbjct: 152 PPGKTSAPRPSPGGRRGRPLGAARGTGLN----PGLSPRLQEPRGHQSARRTDTASRAGW 207

Query: 69  EEEEDEQNGRRHQPGRKQGRAQARPARSPLRPAATACKGDDRGERKKGRRGNPGTRSRRI 128
                    RR   G  +G  + RP      P A+  KG      ++      G RSR  
Sbjct: 208 ATR--RAPSRRRNFGAPRGSRRLRPDAGKF-PEASGGKGQRAAGAERVLDNGRGPRSR-- 262

Query: 129 TSSLWASGRPKPSQLRERSG 148
                A G   P   RER+G
Sbjct: 263 -LPGLAGGVEPPGWSRERAG 281


>gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo
           sapiens]
          Length = 2462

 Score = 35.0 bits (79), Expect = 0.049
 Identities = 33/163 (20%), Positives = 67/163 (41%), Gaps = 23/163 (14%)

Query: 49  KEGRQRKSPLRTLRSNQEEQEEEEDEQNGRRHQPGRKQGRAQARPARSPLRPAATACKGD 108
           ++ +Q++ P+   RS+QEE++E+E E+   + +    +           L+       G+
Sbjct: 503 QQQQQQQQPMP--RSSQEEKDEKEKEKEAEKEE----EKPEVENDKEDLLKEKTDDTSGE 556

Query: 109 DRGERK----KGRR--GNPGTRSRRITSSLWASGRPKPSQLRERSGKKRNVVKPKSLGIV 162
           D  E++    KGR+   + G R  RIT S           +   +  +  +   +S  + 
Sbjct: 557 DNDEKEAVASKGRKTANSQGRRKGRITRS-----------MANEANSEEAITPQQSAELA 605

Query: 163 VLEMREGSTSAEDFWNLWLRGAAGAHPRWDVKRRLLGSVVIRE 205
            +E+ E S   E+      +G       W    R++GS  + +
Sbjct: 606 SMELNESSRWTEEEMETAKKGLLEHGRNWSAIARMVGSKTVSQ 648


>gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo
           sapiens]
          Length = 2524

 Score = 35.0 bits (79), Expect = 0.049
 Identities = 33/163 (20%), Positives = 67/163 (41%), Gaps = 23/163 (14%)

Query: 49  KEGRQRKSPLRTLRSNQEEQEEEEDEQNGRRHQPGRKQGRAQARPARSPLRPAATACKGD 108
           ++ +Q++ P+   RS+QEE++E+E E+   + +    +           L+       G+
Sbjct: 503 QQQQQQQQPMP--RSSQEEKDEKEKEKEAEKEE----EKPEVENDKEDLLKEKTDDTSGE 556

Query: 109 DRGERK----KGRR--GNPGTRSRRITSSLWASGRPKPSQLRERSGKKRNVVKPKSLGIV 162
           D  E++    KGR+   + G R  RIT S           +   +  +  +   +S  + 
Sbjct: 557 DNDEKEAVASKGRKTANSQGRRKGRITRS-----------MANEANSEEAITPQQSAELA 605

Query: 163 VLEMREGSTSAEDFWNLWLRGAAGAHPRWDVKRRLLGSVVIRE 205
            +E+ E S   E+      +G       W    R++GS  + +
Sbjct: 606 SMELNESSRWTEEEMETAKKGLLEHGRNWSAIARMVGSKTVSQ 648


>gi|4503247 ribosomal RNA processing 1 homolog [Homo sapiens]
          Length = 461

 Score = 35.0 bits (79), Expect = 0.049
 Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 14/116 (12%)

Query: 46  RACK---EGRQRKSPLRTLRSNQEEQEEEEDEQNGRRHQPGRKQGRAQARPARSPLRPAA 102
           +AC+   EGR++K   +  R  + +QE  + E+      PG ++ R++ R   +   P A
Sbjct: 347 KACRRLLEGRRQKKTKKQKRLLRLQQERGKGEKEPP--SPGMERKRSRRRGVGAD--PEA 402

Query: 103 TACKGDDRGERKKGR-------RGNPGTRSRRITSSLWASGRPKPSQLRERSGKKR 151
            A  G+  G  ++         RG  G R RR T     S R K + ++E   KK+
Sbjct: 403 RAEAGEQPGTAERALLRDQPRGRGQRGARQRRRTPRPLTSARAKAANVQEPEKKKK 458


>gi|195976805 hypoxia up-regulated 1 precursor [Homo sapiens]
          Length = 999

 Score = 35.0 bits (79), Expect = 0.049
 Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 10/108 (9%)

Query: 68  QEEEEDEQNGRRHQPGRK---QGRAQARPARSPLRPAATACKGDDRGERKKGRRGNPGTR 124
           QEEEE    G + +PG +   +  A+A P     +P     KGD   E +K      G +
Sbjct: 602 QEEEESPAEGSKDEPGEQVELKEEAEA-PVEDGSQPPPPEPKGDATPEGEKATEKENGDK 660

Query: 125 SRRITSSLWASGRPK------PSQLRERSGKKRNVVKPKSLGIVVLEM 166
           S     S  A   P+        + +++  +KR +V+   + +VVL++
Sbjct: 661 SEAQKPSEKAEAGPEGVAPAPEGEKKQKPARKRRMVEEIGVELVVLDL 708


>gi|5453832 hypoxia up-regulated 1 precursor [Homo sapiens]
          Length = 999

 Score = 35.0 bits (79), Expect = 0.049
 Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 10/108 (9%)

Query: 68  QEEEEDEQNGRRHQPGRK---QGRAQARPARSPLRPAATACKGDDRGERKKGRRGNPGTR 124
           QEEEE    G + +PG +   +  A+A P     +P     KGD   E +K      G +
Sbjct: 602 QEEEESPAEGSKDEPGEQVELKEEAEA-PVEDGSQPPPPEPKGDATPEGEKATEKENGDK 660

Query: 125 SRRITSSLWASGRPK------PSQLRERSGKKRNVVKPKSLGIVVLEM 166
           S     S  A   P+        + +++  +KR +V+   + +VVL++
Sbjct: 661 SEAQKPSEKAEAGPEGVAPAPEGEKKQKPARKRRMVEEIGVELVVLDL 708


>gi|100816397 MYST histone acetyltransferase (monocytic leukemia) 4
            [Homo sapiens]
          Length = 2073

 Score = 35.0 bits (79), Expect = 0.049
 Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 5/84 (5%)

Query: 49   KEGRQRKSPLRTLRSNQEEQEEEEDEQNGRRHQPGRKQGRAQARPARSPLRPAATACKGD 108
            KE  + +         +EE+EEEEDE+     +   ++   Q+ P R   +P + A K  
Sbjct: 1066 KESSEEEEEEEDEEEEEEEEEEEEDEEEEEEEEEEEEEENIQSSPPRL-TKPQSVAIKRK 1124

Query: 109  DRGERKKGRRGNPGTRSRRITSSL 132
                 KK R    G + RRI SS+
Sbjct: 1125 RPFVLKKKR----GRKRRRINSSV 1144


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.132    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,432,267
Number of Sequences: 37866
Number of extensions: 566471
Number of successful extensions: 6343
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 304
Number of HSP's that attempted gapping in prelim test: 5296
Number of HSP's gapped (non-prelim): 1085
length of query: 217
length of database: 18,247,518
effective HSP length: 98
effective length of query: 119
effective length of database: 14,536,650
effective search space: 1729861350
effective search space used: 1729861350
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.