Search of human proteins with 239755024

Search of human proteins with 239755024

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239755024 PREDICTED: hypothetical protein [Homo sapiens]
         (136 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239755024 PREDICTED: hypothetical protein [Homo sapiens]           278   1e-75
gi|239749542 PREDICTED: hypothetical protein [Homo sapiens]           275   6e-75
gi|239743694 PREDICTED: hypothetical protein XP_002342927 [Homo ...   275   6e-75
gi|239755981 PREDICTED: hypothetical protein XP_002344766 [Homo ...    41   3e-04
gi|239750506 PREDICTED: hypothetical protein XP_002347417 [Homo ...    41   3e-04
gi|239744803 PREDICTED: hypothetical protein XP_002343287 [Homo ...    41   3e-04
gi|151301053 RNA binding motif protein 33 [Homo sapiens]               38   0.002
gi|239748337 PREDICTED: hypothetical protein XP_002346632 [Homo ...    35   0.014
gi|13325064 cadherin EGF LAG seven-pass G-type receptor 2 [Homo ...    35   0.019
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]        35   0.025
gi|169164040 PREDICTED: hypothetical protein [Homo sapiens]            34   0.042
gi|113413839 PREDICTED: hypothetical protein [Homo sapiens]            34   0.042
gi|113412994 PREDICTED: hypothetical protein [Homo sapiens]            34   0.042
gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3...    33   0.072
gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1...    33   0.072
gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4...    33   0.072
gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2 [...    33   0.072
gi|62243586 ubiquitin-specific protease 21 [Homo sapiens]              33   0.094
gi|74027267 ubiquitin-specific protease 21 [Homo sapiens]              33   0.094
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]         33   0.094
gi|182765480 chromosome 6 open reading frame 186 [Homo sapiens]        32   0.16 
gi|169163335 PREDICTED: similar to hCG1742442 [Homo sapiens]           32   0.16 
gi|27262667 colony stimulating factor 1 isoform a precursor [Hom...    32   0.21 
gi|27262661 colony stimulating factor 1 isoform a precursor [Hom...    32   0.21 
gi|239756083 PREDICTED: hypothetical protein [Homo sapiens]            32   0.21 
gi|239750612 PREDICTED: hypothetical protein [Homo sapiens]            32   0.21 
gi|239750121 PREDICTED: hypothetical protein XP_002347280 [Homo ...    32   0.21 
gi|239744919 PREDICTED: hypothetical protein XP_002343307 [Homo ...    32   0.21 
gi|7657385 CCR4-NOT transcription complex, subunit 2 [Homo sapiens]    32   0.21 
gi|239753500 PREDICTED: hypothetical protein [Homo sapiens]            31   0.27 

>gi|239755024 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 136

 Score =  278 bits (711), Expect = 1e-75
 Identities = 136/136 (100%), Positives = 136/136 (100%)

Query: 1   MISKGTSSGSYSPWGFTSSPGPGRLPSPGQLQPARKKMVSSGQVGRRLPIHARDSAAGAR 60
           MISKGTSSGSYSPWGFTSSPGPGRLPSPGQLQPARKKMVSSGQVGRRLPIHARDSAAGAR
Sbjct: 1   MISKGTSSGSYSPWGFTSSPGPGRLPSPGQLQPARKKMVSSGQVGRRLPIHARDSAAGAR 60

Query: 61  GLGEPTGGRASAWLQLQPPSLRSSPLMHPARRAAGRGSTVSRGRRAGTPGGRLRYGSTVE 120
           GLGEPTGGRASAWLQLQPPSLRSSPLMHPARRAAGRGSTVSRGRRAGTPGGRLRYGSTVE
Sbjct: 61  GLGEPTGGRASAWLQLQPPSLRSSPLMHPARRAAGRGSTVSRGRRAGTPGGRLRYGSTVE 120

Query: 121 RKVVFGIIFPPERDGT 136
           RKVVFGIIFPPERDGT
Sbjct: 121 RKVVFGIIFPPERDGT 136


>gi|239749542 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 136

 Score =  275 bits (704), Expect = 6e-75
 Identities = 135/136 (99%), Positives = 135/136 (99%)

Query: 1   MISKGTSSGSYSPWGFTSSPGPGRLPSPGQLQPARKKMVSSGQVGRRLPIHARDSAAGAR 60
           MISKGTSSGSYSPWGFTSSPGPGRLPSPGQLQPARKKMVSSGQVGRRLPIHARDSAAGAR
Sbjct: 1   MISKGTSSGSYSPWGFTSSPGPGRLPSPGQLQPARKKMVSSGQVGRRLPIHARDSAAGAR 60

Query: 61  GLGEPTGGRASAWLQLQPPSLRSSPLMHPARRAAGRGSTVSRGRRAGTPGGRLRYGSTVE 120
           G GEPTGGRASAWLQLQPPSLRSSPLMHPARRAAGRGSTVSRGRRAGTPGGRLRYGSTVE
Sbjct: 61  GPGEPTGGRASAWLQLQPPSLRSSPLMHPARRAAGRGSTVSRGRRAGTPGGRLRYGSTVE 120

Query: 121 RKVVFGIIFPPERDGT 136
           RKVVFGIIFPPERDGT
Sbjct: 121 RKVVFGIIFPPERDGT 136


>gi|239743694 PREDICTED: hypothetical protein XP_002342927 [Homo
           sapiens]
          Length = 136

 Score =  275 bits (704), Expect = 6e-75
 Identities = 135/136 (99%), Positives = 135/136 (99%)

Query: 1   MISKGTSSGSYSPWGFTSSPGPGRLPSPGQLQPARKKMVSSGQVGRRLPIHARDSAAGAR 60
           MISKGTSSGSYSPWGFTSSPGPGRLPSPGQLQPARKKMVSSGQVGRRLPIHARDSAAGAR
Sbjct: 1   MISKGTSSGSYSPWGFTSSPGPGRLPSPGQLQPARKKMVSSGQVGRRLPIHARDSAAGAR 60

Query: 61  GLGEPTGGRASAWLQLQPPSLRSSPLMHPARRAAGRGSTVSRGRRAGTPGGRLRYGSTVE 120
           G GEPTGGRASAWLQLQPPSLRSSPLMHPARRAAGRGSTVSRGRRAGTPGGRLRYGSTVE
Sbjct: 61  GPGEPTGGRASAWLQLQPPSLRSSPLMHPARRAAGRGSTVSRGRRAGTPGGRLRYGSTVE 120

Query: 121 RKVVFGIIFPPERDGT 136
           RKVVFGIIFPPERDGT
Sbjct: 121 RKVVFGIIFPPERDGT 136


>gi|239755981 PREDICTED: hypothetical protein XP_002344766 [Homo
           sapiens]
          Length = 307

 Score = 40.8 bits (94), Expect = 3e-04
 Identities = 35/110 (31%), Positives = 46/110 (41%), Gaps = 17/110 (15%)

Query: 12  SPWGFTSSPGPGRLPSPGQLQPARKKMVSSGQVGRRLPIHARDSAAGARGLGEPTGGRAS 71
           +P G  +S GPG LPS    +PARK +    +        + +S A A   G  +G R  
Sbjct: 106 APVGSRASSGPG-LPSAAAARPARKTLTCQPR--------SIESPATASSAGCGSGPRVP 156

Query: 72  AWLQLQPPSLRSSPLMHPARRAAGRGST--------VSRGRRAGTPGGRL 113
               L P    SSP    +RR AG G T               G+PGGR+
Sbjct: 157 QVRLLGPGGRPSSPARDGSRRKAGHGCTSQSQGDAVAMEAEARGSPGGRV 206


>gi|239750506 PREDICTED: hypothetical protein XP_002347417 [Homo
           sapiens]
          Length = 325

 Score = 40.8 bits (94), Expect = 3e-04
 Identities = 35/110 (31%), Positives = 46/110 (41%), Gaps = 17/110 (15%)

Query: 12  SPWGFTSSPGPGRLPSPGQLQPARKKMVSSGQVGRRLPIHARDSAAGARGLGEPTGGRAS 71
           +P G  +S GPG LPS    +PARK +    +        + +S A A   G  +G R  
Sbjct: 124 APVGSRASSGPG-LPSAAAARPARKTLTCQPR--------SIESPATASSAGCGSGPRVP 174

Query: 72  AWLQLQPPSLRSSPLMHPARRAAGRGST--------VSRGRRAGTPGGRL 113
               L P    SSP    +RR AG G T               G+PGGR+
Sbjct: 175 QVRLLGPGGRPSSPARDGSRRKAGHGCTSQSQGDAVAMEAEARGSPGGRV 224


>gi|239744803 PREDICTED: hypothetical protein XP_002343287 [Homo
           sapiens]
          Length = 325

 Score = 40.8 bits (94), Expect = 3e-04
 Identities = 35/110 (31%), Positives = 46/110 (41%), Gaps = 17/110 (15%)

Query: 12  SPWGFTSSPGPGRLPSPGQLQPARKKMVSSGQVGRRLPIHARDSAAGARGLGEPTGGRAS 71
           +P G  +S GPG LPS    +PARK +    +        + +S A A   G  +G R  
Sbjct: 124 APVGSRASSGPG-LPSAAAARPARKTLTCQPR--------SIESPATASSAGCGSGPRVP 174

Query: 72  AWLQLQPPSLRSSPLMHPARRAAGRGST--------VSRGRRAGTPGGRL 113
               L P    SSP    +RR AG G T               G+PGGR+
Sbjct: 175 QVRLLGPGGRPSSPARDGSRRKAGHGCTSQSQGDAVAMEAEARGSPGGRV 224


>gi|151301053 RNA binding motif protein 33 [Homo sapiens]
          Length = 1170

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 37/112 (33%), Positives = 50/112 (44%), Gaps = 28/112 (25%)

Query: 5    GTSSGSYSPWGFTSSPGPGRLPSPGQL--QPARKKMVSSGQVGRRLPIHARDSAAGARGL 62
            G S G + P G      P RLP P ++  QPARK  ++ G  G + P H           
Sbjct: 995  GESDGFFHPEG-----QPQRLPQPPEVGPQPARKVTLTRG--GLQQPPHL---------- 1037

Query: 63   GEPTGGRASAWLQLQPPSLRSSPLMHPARRAAGRGSTVSRGRRAGTPGGRLR 114
              P G  A + +   PP ++S   +HPA++A   G    RGR    P GR R
Sbjct: 1038 --PAGPHAHSPV---PPGIKSIQGIHPAKKAIMHG----RGRGVAGPMGRGR 1080


>gi|239748337 PREDICTED: hypothetical protein XP_002346632 [Homo
           sapiens]
          Length = 189

 Score = 35.4 bits (80), Expect = 0.014
 Identities = 30/103 (29%), Positives = 40/103 (38%), Gaps = 6/103 (5%)

Query: 15  GFTSSPGPGRLPS-PGQLQPARKKMVSSGQVGRRLPIHARDSAAGARGLGEPTGGRASAW 73
           GF +  GP R P  PG   P   +     +V R           G+   G P G      
Sbjct: 49  GFQAETGPRRRPFLPGVAHPRTHRQTGPARVTRSAKA-GYGLRVGSGPYGRPRGNAGQEK 107

Query: 74  LQLQPPSLRSS----PLMHPARRAAGRGSTVSRGRRAGTPGGR 112
           +  +P S  S+    P + PAR  AG+G   + G R G   GR
Sbjct: 108 VWEKPASEASASGRPPELAPARSGAGQGRRPNGGDRQGLGAGR 150


>gi|13325064 cadherin EGF LAG seven-pass G-type receptor 2 [Homo
            sapiens]
          Length = 2923

 Score = 35.0 bits (79), Expect = 0.019
 Identities = 31/98 (31%), Positives = 40/98 (40%), Gaps = 9/98 (9%)

Query: 20   PGPGRLPSPGQLQPARKKMVSSGQVGRRLPIHARDSAAGARGLGEPTGGRASAWLQ---- 75
            PGPG+ P PG      K+   +G    RL  +  D+ +    LG   G  A         
Sbjct: 2783 PGPGKAPWPGDFGTTAKESSGNGAPEERLRENG-DALSREGSLGPLPGSSAQPHKGILKK 2841

Query: 76   --LQPPSLRSSPLMHPARRAAG--RGSTVSRGRRAGTP 109
              L   S +SS L  P  +  G  RGS+ S G R G P
Sbjct: 2842 KCLPTISEKSSLLRLPLEQCTGSSRGSSASEGSRGGPP 2879


>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
          Length = 2752

 Score = 34.7 bits (78), Expect = 0.025
 Identities = 36/112 (32%), Positives = 45/112 (40%), Gaps = 3/112 (2%)

Query: 3    SKGTSSGSYSPWGFTSSPGPGRLPSPGQL-QPARKKMVSSGQVGRRLPIHARDSAAGARG 61
            S  +SS S S    +SSP P + P P  L +PA  K    G+   R P    DS   +R 
Sbjct: 2632 SSSSSSSSSSSSSSSSSPSPAK-PGPQALPKPASPKKPPPGERRSRSPRKPIDSLRDSRS 2690

Query: 62   LGEPTGGRASAWLQLQPPSLRSSPLMHPARRA-AGRGSTVSRGRRAGTPGGR 112
            L      R     Q  P   +SS     +RR   G   + S  RR  TP  R
Sbjct: 2691 LSYSPVERRRPSPQPSPRDQQSSSSERGSRRGQRGDSRSPSHKRRRETPSPR 2742



 Score = 26.2 bits (56), Expect = 8.8
 Identities = 30/104 (28%), Positives = 39/104 (37%), Gaps = 16/104 (15%)

Query: 33  PARKKMVSSGQVGRRLPIHARDSAAGARGLGEPTGGRASAWLQLQPPSLRS--SPLMHPA 90
           P R++  S     R     +R  A   R        R  +  + + P+ RS  S    PA
Sbjct: 630 PVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPARRGRS--RSRTPARRSGRSRSRTPA 687

Query: 91  RRAAGRGSTVSRGR------------RAGTPGGRLRYGSTVERK 122
           RR   R  T  RGR             + TP  R R GS+ ERK
Sbjct: 688 RRGRSRSRTPRRGRSRSRSLVRRGRSHSRTPQRRGRSGSSSERK 731


>gi|169164040 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 224

 Score = 33.9 bits (76), Expect = 0.042
 Identities = 25/55 (45%), Positives = 28/55 (50%), Gaps = 8/55 (14%)

Query: 44 VGRRLPIHARDSA--AGARGLGEPTGGRASAWLQLQPPSLRSSPLMHPARRAAGR 96
          VG+R P  AR S   AG  G GEP GGR    L L+P   R    + P R AA R
Sbjct: 16 VGKRNPARARSSPDLAGGAGAGEPLGGR----LFLRP--ARGEAAVRPGRGAARR 64


>gi|113413839 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 224

 Score = 33.9 bits (76), Expect = 0.042
 Identities = 25/55 (45%), Positives = 28/55 (50%), Gaps = 8/55 (14%)

Query: 44 VGRRLPIHARDSA--AGARGLGEPTGGRASAWLQLQPPSLRSSPLMHPARRAAGR 96
          VG+R P  AR S   AG  G GEP GGR    L L+P   R    + P R AA R
Sbjct: 16 VGKRNPARARSSPDLAGGAGAGEPLGGR----LFLRP--ARGEAAVRPGRGAARR 64


>gi|113412994 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 224

 Score = 33.9 bits (76), Expect = 0.042
 Identities = 25/55 (45%), Positives = 28/55 (50%), Gaps = 8/55 (14%)

Query: 44 VGRRLPIHARDSA--AGARGLGEPTGGRASAWLQLQPPSLRSSPLMHPARRAAGR 96
          VG+R P  AR S   AG  G GEP GGR    L L+P   R    + P R AA R
Sbjct: 16 VGKRNPARARSSPDLAGGAGAGEPLGGR----LFLRP--ARGEAAVRPGRGAARR 64


>gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3
           [Homo sapiens]
          Length = 535

 Score = 33.1 bits (74), Expect = 0.072
 Identities = 26/79 (32%), Positives = 32/79 (40%), Gaps = 21/79 (26%)

Query: 50  IHARDSAAGARGLGEPTGGRASAWLQLQPP------SLRSSPLMHP----------ARRA 93
           +  R    G RG   P  GR +      PP      S R +PL  P          A++ 
Sbjct: 401 VRGRGGGRGGRGAPPPPRGRGAP-----PPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQ 455

Query: 94  AGRGSTVSRGRRAGTPGGR 112
            GRGS  SRG R G  GG+
Sbjct: 456 RGRGSRGSRGNRGGNVGGK 474


>gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1
           [Homo sapiens]
          Length = 636

 Score = 33.1 bits (74), Expect = 0.072
 Identities = 26/79 (32%), Positives = 32/79 (40%), Gaps = 21/79 (26%)

Query: 50  IHARDSAAGARGLGEPTGGRASAWLQLQPP------SLRSSPLMHP----------ARRA 93
           +  R    G RG   P  GR +      PP      S R +PL  P          A++ 
Sbjct: 502 VRGRGGGRGGRGAPPPPRGRGAP-----PPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQ 556

Query: 94  AGRGSTVSRGRRAGTPGGR 112
            GRGS  SRG R G  GG+
Sbjct: 557 RGRGSRGSRGNRGGNVGGK 575


>gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4
           [Homo sapiens]
          Length = 532

 Score = 33.1 bits (74), Expect = 0.072
 Identities = 26/79 (32%), Positives = 32/79 (40%), Gaps = 21/79 (26%)

Query: 50  IHARDSAAGARGLGEPTGGRASAWLQLQPP------SLRSSPLMHP----------ARRA 93
           +  R    G RG   P  GR +      PP      S R +PL  P          A++ 
Sbjct: 398 VRGRGGGRGGRGAPPPPRGRGAP-----PPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQ 452

Query: 94  AGRGSTVSRGRRAGTPGGR 112
            GRGS  SRG R G  GG+
Sbjct: 453 RGRGSRGSRGNRGGNVGGK 471


>gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2
           [Homo sapiens]
          Length = 633

 Score = 33.1 bits (74), Expect = 0.072
 Identities = 26/79 (32%), Positives = 32/79 (40%), Gaps = 21/79 (26%)

Query: 50  IHARDSAAGARGLGEPTGGRASAWLQLQPP------SLRSSPLMHP----------ARRA 93
           +  R    G RG   P  GR +      PP      S R +PL  P          A++ 
Sbjct: 499 VRGRGGGRGGRGAPPPPRGRGAP-----PPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQ 553

Query: 94  AGRGSTVSRGRRAGTPGGR 112
            GRGS  SRG R G  GG+
Sbjct: 554 RGRGSRGSRGNRGGNVGGK 572


>gi|62243586 ubiquitin-specific protease 21 [Homo sapiens]
          Length = 565

 Score = 32.7 bits (73), Expect = 0.094
 Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 5/67 (7%)

Query: 18  SSPGPGRLPSPGQLQPARKKMVSSGQVGRRLPIHARDSAAGARGLGEPTGGRASAWLQLQ 77
           S P    LP P +   AR K VSSG + R + I    +  G RG GE     +   L+ +
Sbjct: 93  SPPPTVALPLPSRTNLARSKSVSSGDL-RPMGI----ALGGHRGTGELGAALSRLALRPE 147

Query: 78  PPSLRSS 84
           PP+LR S
Sbjct: 148 PPTLRRS 154


>gi|74027267 ubiquitin-specific protease 21 [Homo sapiens]
          Length = 565

 Score = 32.7 bits (73), Expect = 0.094
 Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 5/67 (7%)

Query: 18  SSPGPGRLPSPGQLQPARKKMVSSGQVGRRLPIHARDSAAGARGLGEPTGGRASAWLQLQ 77
           S P    LP P +   AR K VSSG + R + I    +  G RG GE     +   L+ +
Sbjct: 93  SPPPTVALPLPSRTNLARSKSVSSGDL-RPMGI----ALGGHRGTGELGAALSRLALRPE 147

Query: 78  PPSLRSS 84
           PP+LR S
Sbjct: 148 PPTLRRS 154


>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
          Length = 904

 Score = 32.7 bits (73), Expect = 0.094
 Identities = 34/118 (28%), Positives = 45/118 (38%), Gaps = 8/118 (6%)

Query: 8   SGSYSPWGFTSSPGPGRLPSPGQLQPARKKMVSSGQVGRRLPI-HARDSAAGARGLGEPT 66
           S SYSP      P P R PSP +  P R+          R P+   R S+A   G    +
Sbjct: 306 SRSYSP---RRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSS 362

Query: 67  GGRASAWLQLQPPSLRSSPLMHPARRAAGRGSTVSRGRR---AGTPGGRLRYGSTVER 121
               S     +PP   SSP     RR +   S   R  R     TP  + R+  T ++
Sbjct: 363 SSSRSRSPPKKPPKRTSSP-PRKTRRLSPSASPPRRRHRPSPPATPPPKTRHSPTPQQ 419


>gi|182765480 chromosome 6 open reading frame 186 [Homo sapiens]
          Length = 366

 Score = 32.0 bits (71), Expect = 0.16
 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 4/78 (5%)

Query: 5   GTSSGSYSPWGFTSSPGPGRLPSPGQLQPARKKMVSSGQVGRRLPIHARDSAAGARGLGE 64
           G+ + S  P      PGP   P+PGQ + A ++ V+  + GRR P     S     G   
Sbjct: 39  GSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGTPEPGCCA 98

Query: 65  PTG---GRASAW-LQLQP 78
           P G    +   W + LQP
Sbjct: 99  PRGRPRRKGPRWHIDLQP 116


>gi|169163335 PREDICTED: similar to hCG1742442 [Homo sapiens]
          Length = 295

 Score = 32.0 bits (71), Expect = 0.16
 Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 1/70 (1%)

Query: 15  GFTSSPGPGRLPSPGQLQPARKKMVSSGQVGRRLPIHARDSAAGARGLGEPTGGRASAWL 74
           GF + P P      G L P R+  +S  Q G    + A     G  GL  P G R    +
Sbjct: 138 GFLAPPVPRLFARRGFLHPRRRGFLSQPQSGHSTDVRAPTQLLGLLGLWLP-GARCDIQM 196

Query: 75  QLQPPSLRSS 84
              P SL +S
Sbjct: 197 TQSPSSLSAS 206


>gi|27262667 colony stimulating factor 1 isoform a precursor [Homo
           sapiens]
          Length = 554

 Score = 31.6 bits (70), Expect = 0.21
 Identities = 27/84 (32%), Positives = 31/84 (36%), Gaps = 2/84 (2%)

Query: 18  SSPGPGRLPSPGQL--QPARKKMVSSGQVGRRLPIHARDSAAGARGLGEPTGGRASAWLQ 75
           SS  P  L +P  L  QP   +  SSG V     +  R S    R   EP GG AS    
Sbjct: 406 SSLRPQGLSNPSTLSAQPQLSRSHSSGSVLPLGELEGRRSTRDRRSPAEPEGGPASEGAA 465

Query: 76  LQPPSLRSSPLMHPARRAAGRGST 99
              P   S PL          GS+
Sbjct: 466 RPLPRFNSVPLTDTGHERQSEGSS 489


>gi|27262661 colony stimulating factor 1 isoform a precursor [Homo
           sapiens]
          Length = 554

 Score = 31.6 bits (70), Expect = 0.21
 Identities = 27/84 (32%), Positives = 31/84 (36%), Gaps = 2/84 (2%)

Query: 18  SSPGPGRLPSPGQL--QPARKKMVSSGQVGRRLPIHARDSAAGARGLGEPTGGRASAWLQ 75
           SS  P  L +P  L  QP   +  SSG V     +  R S    R   EP GG AS    
Sbjct: 406 SSLRPQGLSNPSTLSAQPQLSRSHSSGSVLPLGELEGRRSTRDRRSPAEPEGGPASEGAA 465

Query: 76  LQPPSLRSSPLMHPARRAAGRGST 99
              P   S PL          GS+
Sbjct: 466 RPLPRFNSVPLTDTGHERQSEGSS 489


>gi|239756083 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 174

 Score = 31.6 bits (70), Expect = 0.21
 Identities = 30/114 (26%), Positives = 42/114 (36%), Gaps = 10/114 (8%)

Query: 9   GSYSPWGFTSSPGPGRLPSPGQLQPARKKMVSSGQV--GRRLPIHARDSAAGARGLGEPT 66
           GS  PW    + GPGR P    L         S +V  G RL  H    +  A+ L  P 
Sbjct: 5   GSSPPWPLAPASGPGRPPERKDLVAPPDPTAQSPRVLRGLRLLAHRCPPSGEAKLLARPG 64

Query: 67  GG--------RASAWLQLQPPSLRSSPLMHPARRAAGRGSTVSRGRRAGTPGGR 112
            G        R+ + +++ PP    +P +    R   +G         G PG R
Sbjct: 65  TGRPRRSPRSRSQSVVRVAPPVSPRAPPLPLRPRLELQGCPGPGDTSGGFPGSR 118


>gi|239750612 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 174

 Score = 31.6 bits (70), Expect = 0.21
 Identities = 30/114 (26%), Positives = 42/114 (36%), Gaps = 10/114 (8%)

Query: 9   GSYSPWGFTSSPGPGRLPSPGQLQPARKKMVSSGQV--GRRLPIHARDSAAGARGLGEPT 66
           GS  PW    + GPGR P    L         S +V  G RL  H    +  A+ L  P 
Sbjct: 5   GSSPPWPLAPASGPGRPPERKDLVAPPDPTAQSPRVLRGLRLLAHRCPPSGEAKLLARPG 64

Query: 67  GG--------RASAWLQLQPPSLRSSPLMHPARRAAGRGSTVSRGRRAGTPGGR 112
            G        R+ + +++ PP    +P +    R   +G         G PG R
Sbjct: 65  TGRPRRSPRSRSQSVVRVAPPVSPRAPPLPLRPRLELQGCPGPGDTSGGFPGSR 118


>gi|239750121 PREDICTED: hypothetical protein XP_002347280 [Homo
           sapiens]
          Length = 402

 Score = 31.6 bits (70), Expect = 0.21
 Identities = 28/79 (35%), Positives = 32/79 (40%), Gaps = 10/79 (12%)

Query: 45  GRRLPIHARDSAAGARGLGEPTGGRASAWLQLQPPSLRSSPL----MHP--ARRAAGRGS 98
           GRR P  A  +A   RG   P G   SAW  L   S   +PL     HP  A +  GRG 
Sbjct: 226 GRRPPGPAPAAAGATRGTAAPPGRDPSAWF-LDSASACPTPLAARSWHPFVANKLCGRGK 284

Query: 99  TVSRGR---RAGTPGGRLR 114
               G    + G   GR R
Sbjct: 285 GAGGGASRPKEGVGSGRAR 303



 Score = 30.8 bits (68), Expect = 0.36
 Identities = 36/99 (36%), Positives = 41/99 (41%), Gaps = 10/99 (10%)

Query: 18  SSPGPGRLPSPGQLQPARKKMVSSGQVGRRLPIHARDSAAGARGLGEPTGGRASAWLQLQ 77
           S P  GR     + +PAR K V  G VG      A  S A   GLG P G   SA   L+
Sbjct: 45  SGPVRGR----AERRPARGKHVRGGGVGGCRDSRAGGSHAAPSGLGVP-GDSESALGLLE 99

Query: 78  ---PPSLRSSPLMHPARRAAGRGSTVSRGRRAGTPGGRL 113
              P SLR S  +  A RA    S  S      TP  R+
Sbjct: 100 PGPPKSLRISVTLGQAPRAG--PSAASSAAAGKTPPSRV 136


>gi|239744919 PREDICTED: hypothetical protein XP_002343307 [Homo
           sapiens]
          Length = 174

 Score = 31.6 bits (70), Expect = 0.21
 Identities = 30/114 (26%), Positives = 42/114 (36%), Gaps = 10/114 (8%)

Query: 9   GSYSPWGFTSSPGPGRLPSPGQLQPARKKMVSSGQV--GRRLPIHARDSAAGARGLGEPT 66
           GS  PW    + GPGR P    L         S +V  G RL  H    +  A+ L  P 
Sbjct: 5   GSSPPWPLAPASGPGRPPERKDLVAPPDPTAQSPRVLRGLRLLAHRCPPSGEAKLLARPG 64

Query: 67  GG--------RASAWLQLQPPSLRSSPLMHPARRAAGRGSTVSRGRRAGTPGGR 112
            G        R+ + +++ PP    +P +    R   +G         G PG R
Sbjct: 65  TGRPRRSPRSRSQSVVRVAPPVSPRAPPLPLRPRLELQGCPGPGDTSGGFPGSR 118


>gi|7657385 CCR4-NOT transcription complex, subunit 2 [Homo sapiens]
          Length = 540

 Score = 31.6 bits (70), Expect = 0.21
 Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 16/98 (16%)

Query: 2   ISKGTSSGSYSPWGFTSSPGPGRL-------PSPGQLQPARKKMVSSGQVGRRLPIHARD 54
           +++  S G+  P   T + G   +       PS G L    + M++  QVG+ + I +R 
Sbjct: 96  LNRSLSQGTQLPSHVTPTTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRT 155

Query: 55  SAAGARGLGEPTGGRASAWLQLQPPSLRSSPLMHPARR 92
           ++  + GLG P   R+S       PS+   P   P+R+
Sbjct: 156 NSMSSSGLGSP--NRSS-------PSIICMPKQQPSRQ 184


>gi|239753500 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 213

 Score = 31.2 bits (69), Expect = 0.27
 Identities = 33/108 (30%), Positives = 42/108 (38%), Gaps = 28/108 (25%)

Query: 20  PGPGRLPSPGQLQPARKKMVSSGQVGRRLPIHARDSAAGARGLGEPTGGRAS-----AWL 74
           P P RLP P   +PA +             +    ++AG  G   P G R S     A  
Sbjct: 27  PFPERLPRPAAKEPAARTPARQ--------VFPAAASAGREGSAAPDGARGSTPGLAASR 78

Query: 75  QLQPP--SLRSSPLMH----PARR---------AAGRGSTVSRGRRAG 107
           +L PP  + R+ P  H    PARR          A RGS  +R R  G
Sbjct: 79  ELSPPPRAPRTVPAPHPRLSPARRPGAEPENKFVALRGSHKTRNREPG 126


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.134    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,985,824
Number of Sequences: 37866
Number of extensions: 385664
Number of successful extensions: 1774
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 189
Number of HSP's that attempted gapping in prelim test: 1638
Number of HSP's gapped (non-prelim): 313
length of query: 136
length of database: 18,247,518
effective HSP length: 91
effective length of query: 45
effective length of database: 14,801,712
effective search space: 666077040
effective search space used: 666077040
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.