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Search of human proteins with 239754989
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239754989 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
(100 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754989 PREDICTED: hypothetical protein isoform 2 [Homo sap... 208 8e-55
gi|239743638 PREDICTED: hypothetical protein XP_002342911 [Homo ... 208 8e-55
gi|62548864 Rho guanine nucleotide exchange factor 10 [Homo sapi... 32 0.083
gi|125987588 leukocyte immunoglobulin-like receptor, subfamily B... 32 0.11
gi|125987585 leukocyte immunoglobulin-like receptor, subfamily B... 32 0.11
gi|42821110 hypothetical protein LOC340602 [Homo sapiens] 31 0.24
gi|126362957 leukocyte immunoglobulin-like receptor, subfamily B... 30 0.54
gi|116488411 leukocyte immunoglobulin-like receptor, subfamily B... 30 0.54
gi|239753316 PREDICTED: similar to Rho guanine nucleotide exchan... 29 0.70
gi|53729346 plakophilin 1 isoform 1b [Homo sapiens] 29 0.92
gi|53729344 plakophilin 1 isoform 1a [Homo sapiens] 29 0.92
gi|169218113 PREDICTED: similar to plakophilin 1, partial [Homo ... 29 0.92
gi|29826279 tubby isoform b [Homo sapiens] 28 1.2
gi|19923167 tubby isoform a [Homo sapiens] 28 1.2
gi|125988398 leukocyte immunoglobulin-like receptor, subfamily B... 28 1.2
gi|223718055 opioid receptor, mu 1 isoform MOR-1H [Homo sapiens] 28 1.6
gi|35493878 reticuloendotheliosis viral oncogene homolog B [Homo... 28 1.6
gi|169216272 PREDICTED: hypothetical protein [Homo sapiens] 28 1.6
gi|169216572 PREDICTED: hypothetical protein [Homo sapiens] 28 1.6
gi|112734870 hypothetical protein LOC57648 [Homo sapiens] 28 1.6
gi|21687062 hypothetical protein LOC124402 [Homo sapiens] 28 1.6
gi|125988400 leukocyte immunoglobulin-like receptor, subfamily B... 28 2.0
gi|21735415 centromere protein B [Homo sapiens] 28 2.0
gi|86991432 GLI-Kruppel family member GLI2 [Homo sapiens] 27 2.7
gi|239754145 PREDICTED: hypothetical protein [Homo sapiens] 27 2.7
gi|239748608 PREDICTED: hypothetical protein XP_002346730 [Homo ... 27 2.7
gi|239742626 PREDICTED: hypothetical protein XP_002342598 [Homo ... 27 2.7
gi|13129078 alveolar soft part sarcoma chromosome region, candid... 27 2.7
gi|125661043 leukocyte immunoglobulin-like receptor, subfamily B... 27 2.7
gi|125661045 leukocyte immunoglobulin-like receptor, subfamily B... 27 2.7
>gi|239754989 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 100
Score = 208 bits (529), Expect = 8e-55
Identities = 100/100 (100%), Positives = 100/100 (100%)
Query: 1 MALSICTSLGSGTRKCFLSHKHDTTLYCHPRSPVRWESSGSRCLAVRLASVHTRGRATTS 60
MALSICTSLGSGTRKCFLSHKHDTTLYCHPRSPVRWESSGSRCLAVRLASVHTRGRATTS
Sbjct: 1 MALSICTSLGSGTRKCFLSHKHDTTLYCHPRSPVRWESSGSRCLAVRLASVHTRGRATTS 60
Query: 61 SKASSAIVPSGAQGGSARGAPSPPFWNLRSLRAPLPGSGR 100
SKASSAIVPSGAQGGSARGAPSPPFWNLRSLRAPLPGSGR
Sbjct: 61 SKASSAIVPSGAQGGSARGAPSPPFWNLRSLRAPLPGSGR 100
>gi|239743638 PREDICTED: hypothetical protein XP_002342911 [Homo
sapiens]
Length = 100
Score = 208 bits (529), Expect = 8e-55
Identities = 100/100 (100%), Positives = 100/100 (100%)
Query: 1 MALSICTSLGSGTRKCFLSHKHDTTLYCHPRSPVRWESSGSRCLAVRLASVHTRGRATTS 60
MALSICTSLGSGTRKCFLSHKHDTTLYCHPRSPVRWESSGSRCLAVRLASVHTRGRATTS
Sbjct: 1 MALSICTSLGSGTRKCFLSHKHDTTLYCHPRSPVRWESSGSRCLAVRLASVHTRGRATTS 60
Query: 61 SKASSAIVPSGAQGGSARGAPSPPFWNLRSLRAPLPGSGR 100
SKASSAIVPSGAQGGSARGAPSPPFWNLRSLRAPLPGSGR
Sbjct: 61 SKASSAIVPSGAQGGSARGAPSPPFWNLRSLRAPLPGSGR 100
>gi|62548864 Rho guanine nucleotide exchange factor 10 [Homo sapiens]
Length = 1344
Score = 32.3 bits (72), Expect = 0.083
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 2 ALSICTSLGSGTRKCFLSHKHDTTLYCHPRSPVRWESSGSRC--LAVRLASVHTRGRATT 59
A+ + SLGS T+K LS + H S + S S L S+ ++ R
Sbjct: 1240 AIWLGDSLGSMTQKSDLSSSSGSLSLSHGSSSLEHRSEDSTIYDLLKDPVSLRSKARRAK 1299
Query: 60 SSKASSAIVPSGAQG 74
+KASSA+V G QG
Sbjct: 1300 KAKASSALVVCGGQG 1314
>gi|125987588 leukocyte immunoglobulin-like receptor, subfamily B,
member 4 isoform 2 [Homo sapiens]
Length = 447
Score = 32.0 bits (71), Expect = 0.11
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 3 LSICTSLGSGTRKCFLSHKHDTTLYCHPRSPVRWESSGSRCLAVRLASVHTRGRATTSSK 62
+S TS+ GT +CF SH L HP P+ SGS TR +T +
Sbjct: 182 MSPVTSVHGGTYRCFSSHGFSHYLLSHPSDPLELIVSGS---LEDPRPSPTRSVSTAAGP 238
Query: 63 ASSAIVPSGA 72
++P+G+
Sbjct: 239 EDQPLMPTGS 248
>gi|125987585 leukocyte immunoglobulin-like receptor, subfamily B,
member 4 isoform 1 [Homo sapiens]
Length = 448
Score = 32.0 bits (71), Expect = 0.11
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 3 LSICTSLGSGTRKCFLSHKHDTTLYCHPRSPVRWESSGSRCLAVRLASVHTRGRATTSSK 62
+S TS+ GT +CF SH L HP P+ SGS TR +T +
Sbjct: 182 MSPVTSVHGGTYRCFSSHGFSHYLLSHPSDPLELIVSGS---LEDPRPSPTRSVSTAAGP 238
Query: 63 ASSAIVPSGA 72
++P+G+
Sbjct: 239 EDQPLMPTGS 248
>gi|42821110 hypothetical protein LOC340602 [Homo sapiens]
Length = 503
Score = 30.8 bits (68), Expect = 0.24
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 57 ATTSSKASSAIVPSGAQGGSARGAPSPPFWNLRSLRAPLPGSGR 100
+++SS AS++ PS + G S +PSP F LRS+ P P S R
Sbjct: 428 SSSSSYASNSSSPSRSPGLSP-SSPSPEFLGLRSISTPSPESLR 470
>gi|126362957 leukocyte immunoglobulin-like receptor, subfamily B,
member 1 isoform 4 [Homo sapiens]
Length = 651
Score = 29.6 bits (65), Expect = 0.54
Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 4/73 (5%)
Query: 7 TSLGSGTRKCFLSHKHDTTLYCHPRSPVRWESSGSRCLAVRLASVHTRGRATTSSKASSA 66
TS +GT +C+ S L HP P+ SG S T G +TS
Sbjct: 388 TSAHAGTYRCYGSQSSKPYLLTHPSDPLELVVSGPS----GGPSSPTTGPTSTSGPEDQP 443
Query: 67 IVPSGAQGGSARG 79
+ P+G+ S G
Sbjct: 444 LTPTGSDPQSGLG 456
>gi|116488411 leukocyte immunoglobulin-like receptor, subfamily B,
member 1 isoform 1 [Homo sapiens]
Length = 650
Score = 29.6 bits (65), Expect = 0.54
Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 4/73 (5%)
Query: 7 TSLGSGTRKCFLSHKHDTTLYCHPRSPVRWESSGSRCLAVRLASVHTRGRATTSSKASSA 66
TS +GT +C+ S L HP P+ SG S T G +TS
Sbjct: 388 TSAHAGTYRCYGSQSSKPYLLTHPSDPLELVVSGPS----GGPSSPTTGPTSTSGPEDQP 443
Query: 67 IVPSGAQGGSARG 79
+ P+G+ S G
Sbjct: 444 LTPTGSDPQSGLG 456
>gi|239753316 PREDICTED: similar to Rho guanine nucleotide exchange
factor 4 [Homo sapiens]
Length = 368
Score = 29.3 bits (64), Expect = 0.70
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 37 ESSGSRCLAVRLASVHTRGRATTSSKASSAIVPSGAQG-GSARGAPSPPFWNLRSLRAPL 95
ESSG + +S + G + S SS +V G G G RGA S W+L SLR+
Sbjct: 227 ESSGQTSGDLGTSSSSSAGLSPGSDSDSSGVVCGGRGGNGGMRGAVSRS-WSLESLRSAT 285
Query: 96 PG 97
G
Sbjct: 286 AG 287
>gi|53729346 plakophilin 1 isoform 1b [Homo sapiens]
Length = 747
Score = 28.9 bits (63), Expect = 0.92
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 6 CTSLGSGTRKCFL----SHKHDTTLYCHPRSPVRWESSGSR 42
C + G+G+ CF+ + + + LYC PR +R + GS+
Sbjct: 135 CNTTGAGSDICFMQKIKASRSEPDLYCDPRGTLRKGTLGSK 175
>gi|53729344 plakophilin 1 isoform 1a [Homo sapiens]
Length = 726
Score = 28.9 bits (63), Expect = 0.92
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 6 CTSLGSGTRKCFL----SHKHDTTLYCHPRSPVRWESSGSR 42
C + G+G+ CF+ + + + LYC PR +R + GS+
Sbjct: 135 CNTTGAGSDICFMQKIKASRSEPDLYCDPRGTLRKGTLGSK 175
>gi|169218113 PREDICTED: similar to plakophilin 1, partial [Homo
sapiens]
Length = 625
Score = 28.9 bits (63), Expect = 0.92
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 6 CTSLGSGTRKCFL----SHKHDTTLYCHPRSPVRWESSGSR 42
C + G+G+ CF+ + + + LYC PR +R + GS+
Sbjct: 34 CNTTGAGSDICFMQKIKASRSEPDLYCDPRGTLRKGTLGSK 74
>gi|29826279 tubby isoform b [Homo sapiens]
Length = 506
Score = 28.5 bits (62), Expect = 1.2
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 7/48 (14%)
Query: 38 SSGSRCLAVR----LASVH---TRGRATTSSKASSAIVPSGAQGGSAR 78
SSGS V+ LASV TR A S+K + A +G QGG+AR
Sbjct: 77 SSGSTSYQVQEADSLASVQLGATRPTAPASAKRTKAAATAGGQGGAAR 124
>gi|19923167 tubby isoform a [Homo sapiens]
Length = 561
Score = 28.5 bits (62), Expect = 1.2
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 7/48 (14%)
Query: 38 SSGSRCLAVR----LASVH---TRGRATTSSKASSAIVPSGAQGGSAR 78
SSGS V+ LASV TR A S+K + A +G QGG+AR
Sbjct: 132 SSGSTSYQVQEADSLASVQLGATRPTAPASAKRTKAAATAGGQGGAAR 179
>gi|125988398 leukocyte immunoglobulin-like receptor, subfamily B,
member 2 isoform 2 [Homo sapiens]
Length = 597
Score = 28.5 bits (62), Expect = 1.2
Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Query: 3 LSICTSLGSGTRKCFLSHKHDTTLYCHPRSPVRWESSGSRCLAVRLASVHTRGRATTSSK 62
+S TS +GT +C+ S D L HP P+ SG +S G +T
Sbjct: 383 MSPVTSAHAGTYRCYGSLNSDPYLLSHPSEPLELVVSGPS----MGSSPPPTGPISTPGP 438
Query: 63 ASSAIVPSGAQGGSARG 79
+ P+G+ S G
Sbjct: 439 EDQPLTPTGSDPQSGLG 455
>gi|223718055 opioid receptor, mu 1 isoform MOR-1H [Homo sapiens]
Length = 493
Score = 28.1 bits (61), Expect = 1.6
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Query: 37 ESSGSRCLAVRLASVHTRGRATTSSKASSAIVPSGAQG-------GSARGAPSPPFW 86
E+ G+R ++V LA+ H+ R S+ SSA P+ A S APSP W
Sbjct: 69 EALGTRKVSVLLATSHSGARPAVSTMDSSA-APTNASNCTDALAYSSCSPAPSPGSW 124
>gi|35493878 reticuloendotheliosis viral oncogene homolog B [Homo
sapiens]
Length = 579
Score = 28.1 bits (61), Expect = 1.6
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 64 SSAIVPSGAQGGSARGAPSPPFWNLRSLRAPLPGSG 99
+SA+V SG G P P L S +AP PG G
Sbjct: 512 ASAVVCSGGAGAVVGETPGPEPLTLDSYQAPGPGDG 547
>gi|169216272 PREDICTED: hypothetical protein [Homo sapiens]
Length = 753
Score = 28.1 bits (61), Expect = 1.6
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 58 TTSSKASSAIVPSGAQGGSARGAPSP-PFWNLRSLRAPLPGSG 99
+T + S + +PS +QG A P+ +W+L +L P P G
Sbjct: 114 STPRRPSVSEIPSTSQGLGASETPNTNTYWDLSTLETPSPSQG 156
>gi|169216572 PREDICTED: hypothetical protein [Homo sapiens]
Length = 753
Score = 28.1 bits (61), Expect = 1.6
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 58 TTSSKASSAIVPSGAQGGSARGAPSP-PFWNLRSLRAPLPGSG 99
+T + S + +PS +QG A P+ +W+L +L P P G
Sbjct: 114 STPRRPSVSEIPSTSQGLGASETPNTNTYWDLSTLETPSPSQG 156
>gi|112734870 hypothetical protein LOC57648 [Homo sapiens]
Length = 1094
Score = 28.1 bits (61), Expect = 1.6
Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
Query: 60 SSKASSAIVPSGAQGGSARGAPS 82
SS AS+++VP QGGS RG+PS
Sbjct: 444 SSTASNSVVPP-PQGGSGRGSPS 465
>gi|21687062 hypothetical protein LOC124402 [Homo sapiens]
Length = 177
Score = 28.1 bits (61), Expect = 1.6
Identities = 14/35 (40%), Positives = 16/35 (45%)
Query: 52 HTRGRATTSSKASSAIVPSGAQGGSARGAPSPPFW 86
H AT+SS ASS + GG P PP W
Sbjct: 110 HFPHAATSSSAASSWPTAASPPGGPQHHQPQPPLW 144
>gi|125988400 leukocyte immunoglobulin-like receptor, subfamily B,
member 2 isoform 1 [Homo sapiens]
Length = 598
Score = 27.7 bits (60), Expect = 2.0
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 3 LSICTSLGSGTRKCFLSHKHDTTLYCHPRSPVRWESSGSRCLAVRLASVHTRGRATTSSK 62
+S TS +GT +C+ S D L HP P+ SG ++ + T +T +
Sbjct: 383 MSPVTSAHAGTYRCYGSLNSDPYLLSHPSEPLELVVSGP---SMGSSPPPTGPISTPAGP 439
Query: 63 ASSAIVPSGAQGGSARG 79
+ P+G+ S G
Sbjct: 440 EDQPLTPTGSDPQSGLG 456
>gi|21735415 centromere protein B [Homo sapiens]
Length = 599
Score = 27.7 bits (60), Expect = 2.0
Identities = 18/57 (31%), Positives = 21/57 (36%), Gaps = 6/57 (10%)
Query: 43 CLAVRLASVHTRGRATTSSKASSAIVPSGAQGGSARGAPSPPFWNLRSLRAPLPGSG 99
C V A T ++ AS A VPS GGS G W R + P G
Sbjct: 135 CSGVARARARNAAPRTPAAPASPAAVPSEGSGGSTTG------WRAREEQPPSVAEG 185
>gi|86991432 GLI-Kruppel family member GLI2 [Homo sapiens]
Length = 1586
Score = 27.3 bits (59), Expect = 2.7
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
Query: 30 PRSPVRWESSGS----RCLAVRLASVHTRGRATT---SSKASSAIVPSGAQGGSARGAPS 82
PR P+ +G R + +LA G A SS+ ++ VP GA G P
Sbjct: 1371 PRPPLEPSPTGRHRGVRAVQQQLAYARATGHAMAAMPSSQETAEAVPKGAMGNMGSVPPQ 1430
Query: 83 PP 84
PP
Sbjct: 1431 PP 1432
>gi|239754145 PREDICTED: hypothetical protein [Homo sapiens]
Length = 207
Score = 27.3 bits (59), Expect = 2.7
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 71 GAQGGSARGAPSPPF 85
G QGG+ARG +PPF
Sbjct: 8 GCQGGAARGGAAPPF 22
>gi|239748608 PREDICTED: hypothetical protein XP_002346730 [Homo
sapiens]
Length = 207
Score = 27.3 bits (59), Expect = 2.7
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 71 GAQGGSARGAPSPPF 85
G QGG+ARG +PPF
Sbjct: 8 GCQGGAARGGAAPPF 22
>gi|239742626 PREDICTED: hypothetical protein XP_002342598 [Homo
sapiens]
Length = 207
Score = 27.3 bits (59), Expect = 2.7
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 71 GAQGGSARGAPSPPF 85
G QGG+ARG +PPF
Sbjct: 8 GCQGGAARGGAAPPF 22
>gi|13129078 alveolar soft part sarcoma chromosome region, candidate
1 [Homo sapiens]
Length = 553
Score = 27.3 bits (59), Expect = 2.7
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 52 HTRGRATTSSKASSAIVPSGAQGGSARGAPSPPFWNLRSLRAPLPGS 98
HT+ + +T + A++ VP GG G P P L S A LP S
Sbjct: 227 HTQEKQSTRAPAAAPFVPFSG-GGQRLGGPPGPTRPLTSSSAKLPKS 272
>gi|125661043 leukocyte immunoglobulin-like receptor, subfamily B,
member 3 isoform 1 [Homo sapiens]
Length = 632
Score = 27.3 bits (59), Expect = 2.7
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 3 LSICTSLGSGTRKCFLSHKHDTTLYCHPRSPVRWESSG 40
+S TS +GT +C+ S+ + L HP P+ SG
Sbjct: 383 MSPVTSAHAGTYRCYGSYSSNPHLLSHPSEPLELVVSG 420
>gi|125661045 leukocyte immunoglobulin-like receptor, subfamily B,
member 3 isoform 2 [Homo sapiens]
Length = 631
Score = 27.3 bits (59), Expect = 2.7
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 3 LSICTSLGSGTRKCFLSHKHDTTLYCHPRSPVRWESSG 40
+S TS +GT +C+ S+ + L HP P+ SG
Sbjct: 383 MSPVTSAHAGTYRCYGSYSSNPHLLSHPSEPLELVVSG 420
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.128 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,584,849
Number of Sequences: 37866
Number of extensions: 203776
Number of successful extensions: 1221
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 1184
Number of HSP's gapped (non-prelim): 69
length of query: 100
length of database: 18,247,518
effective HSP length: 71
effective length of query: 29
effective length of database: 15,559,032
effective search space: 451211928
effective search space used: 451211928
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.