Guide to the Human Genome
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Name: LOC100292183 Sequence: fasta or formatted (100aa) NCBI GI: 239754989
Description:

PREDICTED: hypothetical protein isoform 2

Not currently referenced in the text

Other entries for this name:
alt prot {209aa} PREDICTED: hypothetical protein isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.0         10           1
 C cysteine            4.0          4           1
 D aspartate           1.0          1           1
 E glutamate           1.0          1           1
 F phenylalanine       2.0          2           1
 G glycine            10.0         10           2
 H histidine           4.0          4           1
 I isoleucine          2.0          2           1
 K lysine              3.0          3           1
 L leucine             9.0          9           1
 M methionine          1.0          1           1
 N asparagine          1.0          1           1
 P proline             8.0          8           2
 Q glutamine           1.0          1           1
 R arginine           11.0         11           1
 S serine             18.0         18           2
 T threonine           7.0          7           2
 V valine              4.0          4           1
 W tryptophan          2.0          2           1
 Y tyrosine            1.0          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein isoform 2 
LOC100289310          1.000   PREDICTED: hypothetical protein XP_002342911 
ARHGEF10              0.038   Rho guanine nucleotide exchange factor 10 
LILRB4                0.038   leukocyte immunoglobulin-like receptor, subfamily B...
LILRB4                0.038   leukocyte immunoglobulin-like receptor, subfamily B...
CXorf67               0.033   hypothetical protein LOC340602 
LILRB1                0.027   leukocyte immunoglobulin-like receptor, subfamily B...
LILRB1                0.027   leukocyte immunoglobulin-like receptor, subfamily B...
LOC730032             0.022   PREDICTED: similar to Rho guanine nucleotide exchan...
PKP1                  0.022   plakophilin 1 isoform 1b 
PKP1                  0.022   plakophilin 1 isoform 1a 
LOC652798             0.022   PREDICTED: similar to plakophilin 1, partial 
TUB                   0.016   tubby isoform b 
TUB                   0.016   tubby isoform a 
LILRB2                0.016   leukocyte immunoglobulin-like receptor, subfamily B...
OPRM1                 0.016   opioid receptor, mu 1 isoform MOR-1H 
RELB                  0.016   reticuloendotheliosis viral oncogene homolog B [Homo...
LOC644893             0.016   PREDICTED: hypothetical protein 
LOC644893             0.016   PREDICTED: hypothetical protein 
KIAA1522              0.016   hypothetical protein LOC57648 
FAM100A               0.016   hypothetical protein LOC124402 
LILRB2                0.016   leukocyte immunoglobulin-like receptor, subfamily B...
CENPB                 0.016   centromere protein B 
GLI2                  0.011   GLI-Kruppel family member GLI2 
LOC100293052          0.011   PREDICTED: hypothetical protein 
LOC100290805          0.011   PREDICTED: hypothetical protein XP_002346730 
LOC100289002          0.011   PREDICTED: hypothetical protein XP_002342598 
ASPSCR1               0.011   alveolar soft part sarcoma chromosome region, candid...
LILRB3                0.011   leukocyte immunoglobulin-like receptor, subfamily B...
LILRB3                0.011   leukocyte immunoglobulin-like receptor, subfamily B...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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