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Search of human proteins with 239754957
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239754957 PREDICTED: hypothetical protein [Homo sapiens]
(95 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754957 PREDICTED: hypothetical protein [Homo sapiens] 207 1e-54
gi|13376064 zinc finger protein 408 [Homo sapiens] 30 0.32
gi|104294877 zinc finger protein 229 [Homo sapiens] 30 0.42
gi|238231453 dual specificity phosphatase 7 [Homo sapiens] 30 0.54
gi|122937269 Wilms tumor 1 interacting protein [Homo sapiens] 28 1.6
gi|114431248 hypothetical protein LOC205717 [Homo sapiens] 28 2.1
gi|228008400 synaptotagmin binding, cytoplasmic RNA interacting ... 28 2.1
gi|228008398 synaptotagmin binding, cytoplasmic RNA interacting ... 28 2.1
gi|228008396 synaptotagmin binding, cytoplasmic RNA interacting ... 28 2.1
gi|45593138 leucine rich repeat containing 25 [Homo sapiens] 28 2.1
gi|145580604 transmembrane protein 65 [Homo sapiens] 28 2.1
gi|155722994 zinc finger CCCH-type containing 3 [Homo sapiens] 27 2.7
gi|28875797 small protein rich in arginine and glycine [Homo sap... 27 3.5
gi|110349786 Alstrom syndrome 1 [Homo sapiens] 27 3.5
gi|5729772 ceroid-lipofuscinosis, neuronal 5 [Homo sapiens] 27 3.5
gi|145199237 transcription elongation factor B polypeptide 3 bin... 27 3.5
gi|169168972 PREDICTED: hypothetical protein [Homo sapiens] 27 4.6
gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo ... 27 4.6
gi|239744530 PREDICTED: hypothetical protein XP_002343182 [Homo ... 27 4.6
gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo ... 27 4.6
gi|153792694 baculoviral IAP repeat-containing 6 [Homo sapiens] 27 4.6
gi|189217888 carbohydrate (N-acetylgalactosamine 4-0) sulfotrans... 27 4.6
gi|189217886 carbohydrate (N-acetylgalactosamine 4-0) sulfotrans... 27 4.6
gi|20127609 carbohydrate (N-acetylgalactosamine 4-0) sulfotransf... 27 4.6
gi|164519076 transmembrane 9 superfamily protein member 4 [Homo ... 27 4.6
gi|224493723 hypothetical protein LOC100130311 [Homo sapiens] 26 6.0
gi|239750966 PREDICTED: hypothetical protein XP_002347633 [Homo ... 26 6.0
gi|239745372 PREDICTED: hypothetical protein XP_002343483 [Homo ... 26 6.0
gi|19913385 G6B protein isoform G6b-G precursor [Homo sapiens] 26 6.0
gi|209571521 cysteine rich BMP regulator 2 isoform 2 [Homo sapiens] 26 6.0
>gi|239754957 PREDICTED: hypothetical protein [Homo sapiens]
Length = 95
Score = 207 bits (528), Expect = 1e-54
Identities = 95/95 (100%), Positives = 95/95 (100%)
Query: 1 MVLPSGALPSACCSCGRGHRRFAPWCGRSQPKQGLGEPRRGHRQVQQGAKGSGDTKRKCE 60
MVLPSGALPSACCSCGRGHRRFAPWCGRSQPKQGLGEPRRGHRQVQQGAKGSGDTKRKCE
Sbjct: 1 MVLPSGALPSACCSCGRGHRRFAPWCGRSQPKQGLGEPRRGHRQVQQGAKGSGDTKRKCE 60
Query: 61 MLCLHLKAGEQRGDLPGSGNGTGKGAEVGVCVDKS 95
MLCLHLKAGEQRGDLPGSGNGTGKGAEVGVCVDKS
Sbjct: 61 MLCLHLKAGEQRGDLPGSGNGTGKGAEVGVCVDKS 95
>gi|13376064 zinc finger protein 408 [Homo sapiens]
Length = 720
Score = 30.4 bits (67), Expect = 0.32
Identities = 30/97 (30%), Positives = 37/97 (38%), Gaps = 33/97 (34%)
Query: 2 VLPSGALPSACCSCGRG---------HRRF-----------APWCGRSQPKQGLGEPRRG 41
V+ SGA P AC CG+ HR+ P CGR QG R
Sbjct: 429 VVHSGARPFACDQCGKAFARRPSLRLHRKTHQVPAAPAPCPCPVCGRPLANQG---SLRN 485
Query: 42 HRQVQQGAKGSGDTKRKCEMLCLHL-KAGEQRGDLPG 77
H ++ G K LC H +A QRG+L G
Sbjct: 486 HMRLHTGEK---------PFLCPHCGRAFRQRGNLRG 513
>gi|104294877 zinc finger protein 229 [Homo sapiens]
Length = 825
Score = 30.0 bits (66), Expect = 0.42
Identities = 26/101 (25%), Positives = 36/101 (35%), Gaps = 19/101 (18%)
Query: 3 LPSGALPSACCSCGRGHRRFAPWCGRSQPKQ----------GLGEPRRGHRQVQQGAKGS 52
L +G P CC CG+G R + + G G + H Q Q +
Sbjct: 705 LHTGEKPYTCCECGKGFRYGSGLLSHKRVHTGEKPYRCHVCGKGYSQSSHLQGHQRVH-T 763
Query: 53 GDTKRKCEML--------CLHLKAGEQRGDLPGSGNGTGKG 85
G+ KCE CLH+ G+ P + GKG
Sbjct: 764 GEKPYKCEECGKGFGRNSCLHVHQRVHTGEKPYTCGVCGKG 804
>gi|238231453 dual specificity phosphatase 7 [Homo sapiens]
Length = 419
Score = 29.6 bits (65), Expect = 0.54
Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 12/54 (22%)
Query: 36 GEPRRGHRQVQQGAKGSGDTKRKCEMLCLHLKAGEQRGDLPGSGNGTGKGAEVG 89
G P R H GA +G T+ AG + G GSG GTG GA G
Sbjct: 7 GPPARAHMSTS-GAAAAGGTR-----------AGSEPGAGSGSGAGTGAGAATG 48
>gi|122937269 Wilms tumor 1 interacting protein [Homo sapiens]
Length = 430
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 6 GALPSACCSCGRGHRRFAPWCGRSQPKQGLGEPRRGHRQVQQGAKGS 52
G+ S+ S G R +P GRS P+ G G P G + + GS
Sbjct: 103 GSARSSGISLGYDQRHGSPRSGRSDPRPGPGPPSVGSARSSVSSLGS 149
>gi|114431248 hypothetical protein LOC205717 [Homo sapiens]
Length = 2245
Score = 27.7 bits (60), Expect = 2.1
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 27 GRSQPKQGLGEPRRGHRQVQQGAK---GSGDTKRKCE 60
G Q + G+P H+Q+QQ + GS T++ CE
Sbjct: 1544 GTDQSRSKTGQPHPHHQQMQQQMQQHFGSSQTEKSCE 1580
>gi|228008400 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 6 [Homo sapiens]
Length = 562
Score = 27.7 bits (60), Expect = 2.1
Identities = 25/74 (33%), Positives = 27/74 (36%), Gaps = 16/74 (21%)
Query: 16 GRGHRRFAPWCGRSQPKQGLGEPRRGHRQVQQGAKGSGDTKRKCEMLCLHLKAGEQRGDL 75
GRG R AP GR G PR Q+G GS R G + G
Sbjct: 500 GRGARGAAPSRGR-----GAAPPRGRAGYSQRGGPGSARGVR-----------GARGGAQ 543
Query: 76 PGSGNGTGKGAEVG 89
G G GKG E G
Sbjct: 544 QQRGRGQGKGVEAG 557
>gi|228008398 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 3 [Homo sapiens]
Length = 527
Score = 27.7 bits (60), Expect = 2.1
Identities = 25/74 (33%), Positives = 27/74 (36%), Gaps = 16/74 (21%)
Query: 16 GRGHRRFAPWCGRSQPKQGLGEPRRGHRQVQQGAKGSGDTKRKCEMLCLHLKAGEQRGDL 75
GRG R AP GR G PR Q+G GS R G + G
Sbjct: 465 GRGARGAAPSRGR-----GAAPPRGRAGYSQRGGPGSARGVR-----------GARGGAQ 508
Query: 76 PGSGNGTGKGAEVG 89
G G GKG E G
Sbjct: 509 QQRGRGQGKGVEAG 522
>gi|228008396 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 2 [Homo sapiens]
Length = 464
Score = 27.7 bits (60), Expect = 2.1
Identities = 25/74 (33%), Positives = 27/74 (36%), Gaps = 16/74 (21%)
Query: 16 GRGHRRFAPWCGRSQPKQGLGEPRRGHRQVQQGAKGSGDTKRKCEMLCLHLKAGEQRGDL 75
GRG R AP GR G PR Q+G GS R G + G
Sbjct: 402 GRGARGAAPSRGR-----GAAPPRGRAGYSQRGGPGSARGVR-----------GARGGAQ 445
Query: 76 PGSGNGTGKGAEVG 89
G G GKG E G
Sbjct: 446 QQRGRGQGKGVEAG 459
>gi|45593138 leucine rich repeat containing 25 [Homo sapiens]
Length = 305
Score = 27.7 bits (60), Expect = 2.1
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 13 CSCGRGHRRFAPWCGRSQPKQGLG-EPRRGHR 43
C R PW + PK GLG +PR G R
Sbjct: 193 CRVARSRELNKPWAAQDGPKPGLGLQPRYGSR 224
>gi|145580604 transmembrane protein 65 [Homo sapiens]
Length = 240
Score = 27.7 bits (60), Expect = 2.1
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 9/65 (13%)
Query: 9 PSACCSCGRGHRRFAPWCGRSQPKQGLG-EPRRGHRQVQQGAKGSGD-------TKRKCE 60
PS CC CGRG AP G + LG P++ + A+G+ D T+R C
Sbjct: 29 PSWCC-CGRGLLALAPPGGLPGGPRRLGTHPKKEPMEALNTAQGARDFIYSLHSTERSCL 87
Query: 61 MLCLH 65
+ LH
Sbjct: 88 LKELH 92
>gi|155722994 zinc finger CCCH-type containing 3 [Homo sapiens]
Length = 948
Score = 27.3 bits (59), Expect = 2.7
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 24 PWCGRSQPKQGLGEPRRGHRQVQQGAKGSGDTKRKCEMLCLHLKAGEQR 72
PW + +P++G GEP RG Q + + G + +L + G+ R
Sbjct: 153 PWSDQ-RPREGEGEPPRGQLQPSRPTRARGTCSVEDPLLVCQKEPGKPR 200
>gi|28875797 small protein rich in arginine and glycine [Homo
sapiens]
Length = 248
Score = 26.9 bits (58), Expect = 3.5
Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 8/70 (11%)
Query: 17 RGHRRFAPWCG-RSQPKQGLGEPRRGHRQVQQGAKGSGDTKRKCEMLCLHLKAGEQRGDL 75
RG R AP G R +G G P RG + +GA G G + + G RG
Sbjct: 140 RGGRAVAPRMGLRRGGVRGRGGPGRGG--LGRGAMGRGGIGGRGRGMI-----GRGRGGF 192
Query: 76 PGSGNGTGKG 85
G G G G+G
Sbjct: 193 GGRGRGRGRG 202
>gi|110349786 Alstrom syndrome 1 [Homo sapiens]
Length = 4169
Score = 26.9 bits (58), Expect = 3.5
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 17 RGHRRFAPWCGRSQPKQGLGEPRRGHRQVQQGAKGSGDTKRKCEMLCLHLKAG 69
RG R W GR Q + L + +R + +++ K +G+ K+ + H +AG
Sbjct: 3656 RGERSVKEWSGRQQQRNKLQKKKR-FKSLEKSHKNTGELKK--SKVLSHHRAG 3705
>gi|5729772 ceroid-lipofuscinosis, neuronal 5 [Homo sapiens]
Length = 407
Score = 26.9 bits (58), Expect = 3.5
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 27 GRSQPKQGLGEPRRGHRQVQQGAKGSGDTKRKCEMLCLHLKAGEQRGDLPGSGNGTGKGA 86
G+ P+ GL PR Q ++GSG T C ++ + + G+G G+ +
Sbjct: 17 GQGAPRPGLAAPRMLLPPASQASRGSGST--GCSLMAQEVDTAQGAEMRRGAGAARGRAS 74
>gi|145199237 transcription elongation factor B polypeptide 3
binding protein 1 [Homo sapiens]
Length = 1221
Score = 26.9 bits (58), Expect = 3.5
Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 4 PSGALPSACCSCGRGHR---RFAPWCGRSQPKQGLGEPR 39
PS A P A GR R R +P G S+P G G PR
Sbjct: 437 PSSATPVATSGKGRPDRPARRPSPTSGDSRPAAGRGPPR 475
>gi|169168972 PREDICTED: hypothetical protein [Homo sapiens]
Length = 84
Score = 26.6 bits (57), Expect = 4.6
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 62 LCLHLKAGEQRG---DLPGSGNGTGKGAEVGVCV 92
L L L G+ G DLP SGNG G G+ C+
Sbjct: 28 LPLPLSPGDDNGWGLDLPRSGNGEGTGSPNSDCL 61
>gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo
sapiens]
Length = 647
Score = 26.6 bits (57), Expect = 4.6
Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Query: 9 PSACCSCGRGHRRFAPWCGRSQPKQ-----GLGEPRRGHRQVQQGAKGSG 53
P+A C + R APW R+ GL PRRG + GA G
Sbjct: 195 PAARRGCAQEQLRNAPWAPRAHSPAGRLALGLIAPRRGAGRAGAGAAACG 244
>gi|239744530 PREDICTED: hypothetical protein XP_002343182 [Homo
sapiens]
Length = 223
Score = 26.6 bits (57), Expect = 4.6
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 27 GRSQPKQGLGEPRRGHRQVQQGAKGSGDTKRKCEMLCLH-LKAGEQRGDLPGSGNGTGKG 85
GR+Q + + P R ++ G G KC++ + L G+ R +LP S NG KG
Sbjct: 41 GRAQRQAVVQLPVR--KRPTSGETGQTKGSEKCDLGVVEALGKGKGRSELPHSSNGRTKG 98
>gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo
sapiens]
Length = 647
Score = 26.6 bits (57), Expect = 4.6
Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Query: 9 PSACCSCGRGHRRFAPWCGRSQPKQ-----GLGEPRRGHRQVQQGAKGSG 53
P+A C + R APW R+ GL PRRG + GA G
Sbjct: 195 PAARRGCAQEQLRNAPWAPRAHSPAGRLALGLIAPRRGAGRAGAGAAACG 244
>gi|153792694 baculoviral IAP repeat-containing 6 [Homo sapiens]
Length = 4857
Score = 26.6 bits (57), Expect = 4.6
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 56 KRKCEMLCLHLKAGEQRGDLPGSGNGTG 83
K ++LC + QRG+LP SGN +G
Sbjct: 3779 KLMAQVLCELFQTSPQRGNLPTSGNISG 3806
>gi|189217888 carbohydrate (N-acetylgalactosamine 4-0)
sulfotransferase 8 [Homo sapiens]
Length = 424
Score = 26.6 bits (57), Expect = 4.6
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 38 PRRGHRQVQQGAKGSGDTKRKCEMLCLHLKAGEQRG 73
PR+ H + G GD K E + L +G RG
Sbjct: 51 PRQPHHDLPPGGSQDGDLKEPTERVTRDLSSGAPRG 86
>gi|189217886 carbohydrate (N-acetylgalactosamine 4-0)
sulfotransferase 8 [Homo sapiens]
Length = 424
Score = 26.6 bits (57), Expect = 4.6
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 38 PRRGHRQVQQGAKGSGDTKRKCEMLCLHLKAGEQRG 73
PR+ H + G GD K E + L +G RG
Sbjct: 51 PRQPHHDLPPGGSQDGDLKEPTERVTRDLSSGAPRG 86
>gi|20127609 carbohydrate (N-acetylgalactosamine 4-0)
sulfotransferase 8 [Homo sapiens]
Length = 424
Score = 26.6 bits (57), Expect = 4.6
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 38 PRRGHRQVQQGAKGSGDTKRKCEMLCLHLKAGEQRG 73
PR+ H + G GD K E + L +G RG
Sbjct: 51 PRQPHHDLPPGGSQDGDLKEPTERVTRDLSSGAPRG 86
>gi|164519076 transmembrane 9 superfamily protein member 4 [Homo
sapiens]
Length = 642
Score = 26.6 bits (57), Expect = 4.6
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 24 PWCGRSQ---PKQGLGEPRRGHRQVQQGAKGSGDTKRKCEMLC 63
P+C S+ + LGE RG R V + ++++KCE+LC
Sbjct: 62 PFCQPSKITYKAENLGEVLRGDRIVNTPFQVLMNSEKKCEVLC 104
>gi|224493723 hypothetical protein LOC100130311 [Homo sapiens]
Length = 190
Score = 26.2 bits (56), Expect = 6.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 13 CSCGRGHRRFAPWCGRSQPKQGLGEP 38
C CGRG + A + +SQ + GLG P
Sbjct: 154 CLCGRGLQGSASFLRQSQQQLGLGIP 179
>gi|239750966 PREDICTED: hypothetical protein XP_002347633 [Homo
sapiens]
Length = 261
Score = 26.2 bits (56), Expect = 6.0
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
Query: 28 RSQPKQGLGEPRRGHRQVQQGAKGSGDTKRKCEMLCLHLKAG 69
R P+QGLG PR+ H G +G G + E LH + G
Sbjct: 107 RRDPEQGLGPPRKAH-----GVQG-GPCAARAEGGALHGRPG 142
>gi|239745372 PREDICTED: hypothetical protein XP_002343483 [Homo
sapiens]
Length = 261
Score = 26.2 bits (56), Expect = 6.0
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
Query: 28 RSQPKQGLGEPRRGHRQVQQGAKGSGDTKRKCEMLCLHLKAG 69
R P+QGLG PR+ H G +G G + E LH + G
Sbjct: 107 RRDPEQGLGPPRKAH-----GVQG-GPCAARAEGGALHGRPG 142
>gi|19913385 G6B protein isoform G6b-G precursor [Homo sapiens]
Length = 222
Score = 26.2 bits (56), Expect = 6.0
Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 16/69 (23%)
Query: 19 HRRFAPWCGRSQPKQGLGEPRRG--HRQVQQGAKGSGDTKRKCEMLCLHLKAGEQRGDLP 76
HRR P R P+ L P + + +KG +A + RG P
Sbjct: 166 HRRLPPQPIRPLPRFALSPPHSSTCENRAPEASKGG--------------RAQDSRGPGP 211
Query: 77 GSGNGTGKG 85
G+G G G G
Sbjct: 212 GTGKGMGMG 220
>gi|209571521 cysteine rich BMP regulator 2 isoform 2 [Homo sapiens]
Length = 814
Score = 26.2 bits (56), Expect = 6.0
Identities = 20/69 (28%), Positives = 24/69 (34%), Gaps = 12/69 (17%)
Query: 8 LPSACCSCGRGHRRFAPWCGRSQPKQGLGEPRRGHRQVQQGAKGSGDTKRKCEMLCLHLK 67
LP CC P C + G P H + Q+ GD R+C LCL
Sbjct: 648 LPGECC----------PQCPAAPAPAGCPRPGAAHARHQEYFSPPGDPCRRC--LCLDGS 695
Query: 68 AGEQRGDLP 76
QR P
Sbjct: 696 VSCQRLPCP 704
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.138 0.454
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,942,353
Number of Sequences: 37866
Number of extensions: 255743
Number of successful extensions: 986
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 966
Number of HSP's gapped (non-prelim): 56
length of query: 95
length of database: 18,247,518
effective HSP length: 66
effective length of query: 29
effective length of database: 15,748,362
effective search space: 456702498
effective search space used: 456702498
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.