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Search of human proteins with 239754902
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239754902 PREDICTED: hypothetical protein [Homo sapiens]
(274 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754902 PREDICTED: hypothetical protein [Homo sapiens] 572 e-164
gi|239749442 PREDICTED: hypothetical protein XP_002347044 [Homo ... 551 e-157
gi|239741939 PREDICTED: hypothetical protein XP_002342358 [Homo ... 191 8e-49
gi|239753480 PREDICTED: hypothetical protein [Homo sapiens] 172 4e-43
gi|239742226 PREDICTED: hypothetical protein [Homo sapiens] 113 2e-25
gi|239753760 PREDICTED: hypothetical protein, partial [Homo sapi... 112 3e-25
gi|169172282 PREDICTED: similar to hCG1818014 [Homo sapiens] 77 2e-14
gi|54607141 vacuolar protein sorting 13D isoform 2 [Homo sapiens] 40 0.002
gi|54607139 vacuolar protein sorting 13D isoform 1 [Homo sapiens] 40 0.002
gi|31543535 R3H domain containing 1 [Homo sapiens] 38 0.008
gi|56549696 E1A binding protein p400 [Homo sapiens] 34 0.12
gi|239756035 PREDICTED: hypothetical protein XP_002344789 [Homo ... 33 0.21
gi|239750577 PREDICTED: hypothetical protein XP_002347459 [Homo ... 33 0.21
gi|239744876 PREDICTED: hypothetical protein XP_002344118 [Homo ... 33 0.21
gi|40805854 isthmin 2 homolog isoform 3 [Homo sapiens] 33 0.35
gi|40805858 isthmin 2 homolog isoform 1 [Homo sapiens] 33 0.35
gi|15529996 son of sevenless homolog 1 [Homo sapiens] 32 0.46
gi|9506545 delta-like 4 protein precursor [Homo sapiens] 32 0.46
gi|112789562 interferon, gamma-inducible protein 16 [Homo sapiens] 32 0.46
gi|32698714 hypothetical protein LOC284058 [Homo sapiens] 32 0.46
gi|115430209 phosphatase and actin regulator 4 isoform 2 [Homo s... 32 0.46
gi|25121980 dispatched B [Homo sapiens] 32 0.46
gi|115430211 phosphatase and actin regulator 4 isoform 1 [Homo s... 32 0.46
gi|114431248 hypothetical protein LOC205717 [Homo sapiens] 32 0.60
gi|21618327 forkhead box I1 isoform a [Homo sapiens] 32 0.60
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 32 0.60
gi|222418647 mucin 7, secreted precursor [Homo sapiens] 32 0.78
gi|222418649 mucin 7, secreted precursor [Homo sapiens] 32 0.78
gi|222418645 mucin 7, secreted precursor [Homo sapiens] 32 0.78
gi|11991660 sema domain, transmembrane domain (TM), and cytoplas... 32 0.78
>gi|239754902 PREDICTED: hypothetical protein [Homo sapiens]
Length = 274
Score = 572 bits (1475), Expect = e-164
Identities = 274/274 (100%), Positives = 274/274 (100%)
Query: 1 MAIIFFVSDSIMGICSSPHPMQFPSSWSGLPVSFRGCLSAGAVLVHRGVPWACPCGKVRT 60
MAIIFFVSDSIMGICSSPHPMQFPSSWSGLPVSFRGCLSAGAVLVHRGVPWACPCGKVRT
Sbjct: 1 MAIIFFVSDSIMGICSSPHPMQFPSSWSGLPVSFRGCLSAGAVLVHRGVPWACPCGKVRT 60
Query: 61 VMLTGCPAWSPLKTQSEIRGCTHHSSGAGPAGTGSFCDTCRITRLCEQTQLPELTEYQYQ 120
VMLTGCPAWSPLKTQSEIRGCTHHSSGAGPAGTGSFCDTCRITRLCEQTQLPELTEYQYQ
Sbjct: 61 VMLTGCPAWSPLKTQSEIRGCTHHSSGAGPAGTGSFCDTCRITRLCEQTQLPELTEYQYQ 120
Query: 121 HQKLTGKMNNTSSSPGLQLHNPQTRTSAPPRVSSCKTLKLEHQLLPGSPANNISSSPGLQ 180
HQKLTGKMNNTSSSPGLQLHNPQTRTSAPPRVSSCKTLKLEHQLLPGSPANNISSSPGLQ
Sbjct: 121 HQKLTGKMNNTSSSPGLQLHNPQTRTSAPPRVSSCKTLKLEHQLLPGSPANNISSSPGLQ 180
Query: 181 LHDPQTRTSAPPCIFSSTTLNLEHHSSLGLQLQGPQTKTSASPRVFRCTTLKLEHQLLSE 240
LHDPQTRTSAPPCIFSSTTLNLEHHSSLGLQLQGPQTKTSASPRVFRCTTLKLEHQLLSE
Sbjct: 181 LHDPQTRTSAPPCIFSSTTLNLEHHSSLGLQLQGPQTKTSASPRVFRCTTLKLEHQLLSE 240
Query: 241 SPKTPVPPQVFSCKTLKLEKHQLLPGSTAARPSN 274
SPKTPVPPQVFSCKTLKLEKHQLLPGSTAARPSN
Sbjct: 241 SPKTPVPPQVFSCKTLKLEKHQLLPGSTAARPSN 274
>gi|239749442 PREDICTED: hypothetical protein XP_002347044 [Homo
sapiens]
Length = 269
Score = 551 bits (1421), Expect = e-157
Identities = 267/274 (97%), Positives = 267/274 (97%), Gaps = 5/274 (1%)
Query: 1 MAIIFFVSDSIMGICSSPHPMQFPSSWSGLPVSFRGCLSAGAVLVHRGVPWACPCGKVRT 60
MAIIFFVSDSIMGICSSPHPMQFPSSWSGLPVSFRGCLSAGAVLVHRGVPWACPCGKVRT
Sbjct: 1 MAIIFFVSDSIMGICSSPHPMQFPSSWSGLPVSFRGCLSAGAVLVHRGVPWACPCGKVRT 60
Query: 61 VMLTGCPAWSPLKTQSEIRGCTHHSSGAGPAGTGSFCDTCRITRLCEQTQLPELTEYQYQ 120
VMLTGCPAWSPLKTQSEIRGCTHHSSGAGPAGTGSFCDTCRITRLCEQTQLPELTEYQYQ
Sbjct: 61 VMLTGCPAWSPLKTQSEIRGCTHHSSGAGPAGTGSFCDTCRITRLCEQTQLPELTEYQYQ 120
Query: 121 HQKLTGKMNNTSSSPGLQLHNPQTRTSAPPRVSSCKTLKLEHQLLPGSPANNISSSPGLQ 180
HQKLTGKMNNTSSSPGLQLHNPQTRTSAPPRVSSCKTLKLEHQLLPGSPA GLQ
Sbjct: 121 HQKLTGKMNNTSSSPGLQLHNPQTRTSAPPRVSSCKTLKLEHQLLPGSPA-----FEGLQ 175
Query: 181 LHDPQTRTSAPPCIFSSTTLNLEHHSSLGLQLQGPQTKTSASPRVFRCTTLKLEHQLLSE 240
LHDPQTRTSAPPCIFSSTTLNLEHHSSLGLQLQGPQTKTSASPRVFRCTTLKLEHQLLSE
Sbjct: 176 LHDPQTRTSAPPCIFSSTTLNLEHHSSLGLQLQGPQTKTSASPRVFRCTTLKLEHQLLSE 235
Query: 241 SPKTPVPPQVFSCKTLKLEKHQLLPGSTAARPSN 274
SPKTPVPPQVFSCKTLKLEKHQLLPGSTAARPSN
Sbjct: 236 SPKTPVPPQVFSCKTLKLEKHQLLPGSTAARPSN 269
>gi|239741939 PREDICTED: hypothetical protein XP_002342358 [Homo
sapiens]
Length = 389
Score = 191 bits (484), Expect = 8e-49
Identities = 117/213 (54%), Positives = 129/213 (60%), Gaps = 36/213 (16%)
Query: 83 HHSSGAGPAGTGSFCDTCRITRLCEQTQLPELTEYQYQHQKLTGKMNNTSSSPGLQLHNP 142
H SSGAGPAGTGSFCDTC IT LCE QLPELT+ Q + ++ PGLQLH+P
Sbjct: 32 HPSSGAGPAGTGSFCDTCCITSLCEWIQLPELTDSSPGLQLHDPQSGTSAPPPGLQLHDP 91
Query: 143 QTRTSAPPRVSSCKTLKLEHQLLPGSPAN-----NISSSPGLQLHDPQTRTSAPPCIFSS 197
QT TSAPPRVSSC T KLEHQ GSPA NISS PGLQLHDPQTRTSAPP + S
Sbjct: 92 QTGTSAPPRVSSCTTRKLEHQPHSGSPAAPPSNCNISSPPGLQLHDPQTRTSAPPRVSSC 151
Query: 198 TTLNLEHH----------------SSLGLQLQGPQTKTSASPRVFRCTTLKLEHQLLSES 241
L LEH S GLQL P+T+T +S C LK +HQL
Sbjct: 152 KALKLEHQLPAGSPAGRPSNWIISSPQGLQLHSPKTETVSS-----CKALKRQHQL---- 202
Query: 242 PKTPVPPQVFSCKTLKLEKHQLLPGSTAARPSN 274
PP+V SC TLK E HQL PGS AA PS+
Sbjct: 203 -----PPRVSSCTTLKPE-HQLPPGSPAAWPSS 229
Score = 110 bits (276), Expect = 1e-24
Identities = 91/221 (41%), Positives = 100/221 (45%), Gaps = 68/221 (30%)
Query: 116 EYQYQHQKLTGKMNN--TSSSPGLQLHNPQTRTSA-----------PPRVSSCKTLKLEH 162
E+Q G+ +N SS GLQLH+P+T T + PPRVSSC TLK EH
Sbjct: 157 EHQLPAGSPAGRPSNWIISSPQGLQLHSPKTETVSSCKALKRQHQLPPRVSSCTTLKPEH 216
Query: 163 QLLPGSPAN----------------------NISSSPGLQLHDPQTRTSAPP-------- 192
QL PGSPA NISS GLQLHDPQT TSAPP
Sbjct: 217 QLPPGSPAAWPSSCNISSPPVSSCTPQPSNWNISSPQGLQLHDPQTGTSAPPGSPALLPG 276
Query: 193 --------CIFSSTTLNLEHHSSLGLQLQGPQTKTSASPRVFRCTTLKLEHQLLSESPKT 244
I S L LEH QL PQT TSA PRV C TLKLEHQL SP
Sbjct: 277 SPASRPSNWIISFPALKLEH------QLPSPQTGTSALPRVSSCRTLKLEHQLSPGSPAA 330
Query: 245 -------PVPPQVFSCKTL----KLEKHQLLPGSTAARPSN 274
P Q+ C L +HQLL G A R S+
Sbjct: 331 RSTTLTEEQPHQLLHCLQLHNLRHQWQHQLLRGRPAQRLSD 371
Score = 47.0 bits (110), Expect = 2e-05
Identities = 35/92 (38%), Positives = 38/92 (41%), Gaps = 44/92 (47%)
Query: 138 QLHNPQTRTSAPPRVSSCKTLKLEHQLLP------------------------------- 166
QL +PQT TSA PRVSSC+TLKLEHQL P
Sbjct: 297 QLPSPQTGTSALPRVSSCRTLKLEHQLSPGSPAARSTTLTEEQPHQLLHCLQLHNLRHQW 356
Query: 167 ------GSPANNISS-------SPGLQLHDPQ 185
G PA +S SP LQLH PQ
Sbjct: 357 QHQLLRGRPAQRLSDLKGSIGPSPRLQLHHPQ 388
Score = 28.9 bits (63), Expect = 5.1
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 9/69 (13%)
Query: 83 HHSSGAGPAGTGSFCDTCRITRLCEQTQLPELTEYQYQHQKLTGK--------MNNTSSS 134
H S PA + + +L QL L +Q+QHQ L G+ + S
Sbjct: 321 HQLSPGSPAARSTTLTEEQPHQLLHCLQLHNL-RHQWQHQLLRGRPAQRLSDLKGSIGPS 379
Query: 135 PGLQLHNPQ 143
P LQLH+PQ
Sbjct: 380 PRLQLHHPQ 388
>gi|239753480 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1344
Score = 172 bits (435), Expect = 4e-43
Identities = 130/298 (43%), Positives = 156/298 (52%), Gaps = 56/298 (18%)
Query: 11 IMGICSSPHPMQFPSSWSGLPVSFRGCLSAGAVLVHRGVPWACPCGKVRTVMLTGCPAWS 70
I+GICSS P+ FPSSWS PV +S G V + C V+ +WS
Sbjct: 877 IVGICSSQCPVLFPSSWSAPPV-IPFSISHGIVGI---------CSSQGPVLFPS--SWS 924
Query: 71 PLKTQSEIRGCT-----HHSSGAGPAGTGSFCDTCRITRLCEQTQLPELTEYQYQHQ--- 122
L TQSEIRG T G GP+ T + C+ +Q ++ Q +
Sbjct: 925 ALPTQSEIRGHTILAVEQDQLGQGPSVTPAASPAYVNGFSCQNSQSISISTETSQEKCSS 984
Query: 123 ---KLTGKMNNTSSSP-GLQLHNPQTRTSAPPRVSSCKTLKLEHQLLPGSPAN-----NI 173
+L + TS+ P GLQLH+PQT TSAPPRVSSC T KLEHQ GSPA NI
Sbjct: 985 PGLQLHDPQSGTSAPPPGLQLHDPQTGTSAPPRVSSCTTRKLEHQPHSGSPAAPPSNCNI 1044
Query: 174 SSSPGLQLHDPQTRTSAPPCIFSSTTLNLEHH----------------SSLGLQLQGPQT 217
SS PGLQLHDPQTRTSAPP + S L LEH S GLQL P+T
Sbjct: 1045 SSPPGLQLHDPQTRTSAPPRVSSCKALKLEHQLPAGSPAGRPSNWIISSPQGLQLHSPKT 1104
Query: 218 KTS-ASPRVFRCTTLKLEHQLLSESPKTPVPPQVFSCKTLKLEKHQLLPGSTAARPSN 274
+T+ +S +V C LK +HQL PP+V SC TLK E HQL PGS AA PS+
Sbjct: 1105 ETNISSLQVSSCKALKRQHQL---------PPRVSSCTTLKPE-HQLPPGSPAAWPSS 1152
Score = 110 bits (275), Expect = 1e-24
Identities = 81/189 (42%), Positives = 88/189 (46%), Gaps = 62/189 (32%)
Query: 116 EYQYQHQKLTGKMNN--TSSSPGLQLHNPQTRTSA-----------------PPRVSSCK 156
E+Q G+ +N SS GLQLH+P+T T+ PPRVSSC
Sbjct: 1074 EHQLPAGSPAGRPSNWIISSPQGLQLHSPKTETNISSLQVSSCKALKRQHQLPPRVSSCT 1133
Query: 157 TLKLEHQLLPGSPAN--------------------NISSSPGLQLHDPQTRTSAPPCIFS 196
TLK EHQL PGSPA NISS GLQLHDPQTRTSA P + S
Sbjct: 1134 TLKPEHQLPPGSPAAWPSSCNISSPPVSSCTPSNWNISSPEGLQLHDPQTRTSALPRVSS 1193
Query: 197 STTLNLEHHSSLGL-----------------------QLQGPQTKTSASPRVFRCTTLKL 233
T L LEH L L QL PQT TSA PRV C TLKL
Sbjct: 1194 CTALKLEHQLPLRLLPGSPASRPSNWIISFPALKLEHQLPSPQTGTSALPRVSSCRTLKL 1253
Query: 234 EHQLLSESP 242
EHQL SP
Sbjct: 1254 EHQLSPGSP 1262
Score = 56.2 bits (134), Expect = 3e-08
Identities = 27/33 (81%), Positives = 29/33 (87%)
Query: 138 QLHNPQTRTSAPPRVSSCKTLKLEHQLLPGSPA 170
QL +PQT TSA PRVSSC+TLKLEHQL PGSPA
Sbjct: 1231 QLPSPQTGTSALPRVSSCRTLKLEHQLSPGSPA 1263
>gi|239742226 PREDICTED: hypothetical protein [Homo sapiens]
Length = 303
Score = 113 bits (283), Expect = 2e-25
Identities = 87/209 (41%), Positives = 94/209 (44%), Gaps = 60/209 (28%)
Query: 123 KLTGKMNNTSSSP-GLQLHNPQTRTSAPPRVSSCKTLKLEHQLLPGSPAN-----NISSS 176
+L G TS+ P LQLH PQT TSAP RVS C KLEH+L GSPA NISS
Sbjct: 4 QLQGPQTGTSAPPPDLQLHGPQTGTSAPRRVSRCTACKLEHELPAGSPAAWPSNWNISSP 63
Query: 177 PGLQLHDPQTRTSAPPCIFSSTTLNLEHH----------------SSLGLQLQGPQTKTS 220
P QLHDPQT SAPP T LNL+H S GLQL G QT TS
Sbjct: 64 PDRQLHDPQTGISAPPRGSRCTALNLQHQLPTGSPAARLSNRNICSPQGLQLHGSQTGTS 123
Query: 221 ASPRVFRCTTLKLEHQLLSESP-------------------------------------K 243
A RV CT L L+H L + SP
Sbjct: 124 APHRVSSCTVLNLQHWLPTRSPDARPSNCNISSPRVSSYTASTWNISSPPGLQLHGPQTA 183
Query: 244 TPVPPQVFSCKTLKLEKHQLLPGSTAARP 272
T P +V C LKLE HQL G TAA P
Sbjct: 184 TLAPHRVSRCTALKLE-HQLPTGYTAAWP 211
Score = 107 bits (267), Expect = 1e-23
Identities = 84/200 (42%), Positives = 89/200 (44%), Gaps = 60/200 (30%)
Query: 130 NTSSSPGLQLHNPQTRTSAPPRVSSCKTLKLEHQLLPGSPA-----NNISSSPGLQLHDP 184
N SS P QLH+PQT SAPPR S C L L+HQL GSPA NI S GLQLH
Sbjct: 59 NISSPPDRQLHDPQTGISAPPRGSRCTALNLQHQLPTGSPAARLSNRNICSPQGLQLHGS 118
Query: 185 QTRTSAPPCIFSSTTLNLEH-------------------------------HSSLGLQLQ 213
QT TSAP + S T LNL+H S GLQL
Sbjct: 119 QTGTSAPHRVSSCTVLNLQHWLPTRSPDARPSNCNISSPRVSSYTASTWNISSPPGLQLH 178
Query: 214 GPQTKTSASPRVFRCTTLKLEHQL---------LSESPKTPVPPQVFS----------CK 254
GPQT T A RV RCT LKLEHQL S P Q S C
Sbjct: 179 GPQTATLAPHRVSRCTALKLEHQLPTGYTAAWPCSWRPGWEPMFQFGSHAAGGTAGSRCS 238
Query: 255 TLKLEKHQLLPGSTAARPSN 274
+L LPGS ARPSN
Sbjct: 239 SL-----MFLPGSPGARPSN 253
Score = 97.8 bits (242), Expect = 9e-21
Identities = 83/220 (37%), Positives = 92/220 (41%), Gaps = 65/220 (29%)
Query: 115 TEYQYQHQKLTGKM------NNTSSSPGLQLHNPQTRTSAPPRVSSCKTLKLEHQLLPGS 168
T QHQ TG N S GLQLH QT TSAP RVSSC L L+H L S
Sbjct: 85 TALNLQHQLPTGSPAARLSNRNICSPQGLQLHGSQTGTSAPHRVSSCTVLNLQHWLPTRS 144
Query: 169 PAN--------------------NISSSPGLQLHDPQTRTSAPPCIFSSTTLNLEHHSSL 208
P NISS PGLQLH PQT T AP + T L LEH
Sbjct: 145 PDARPSNCNISSPRVSSYTASTWNISSPPGLQLHGPQTATLAPHRVSRCTALKLEHQLPT 204
Query: 209 GLQLQGPQTKTSASPRVF-------------RCTTL---------------------KLE 234
G P + +F RC++L K E
Sbjct: 205 GYTAAWPCSWRPGWEPMFQFGSHAAGGTAGSRCSSLMFLPGSPGARPSNWNISSPALKPE 264
Query: 235 HQLLSESP----KTPVPPQVFSCKTLKLEKHQLLPGSTAA 270
HQL + SP T PP+V SC TLKLE HQLLP S+AA
Sbjct: 265 HQLPAGSPPAQPSTSAPPRVLSCTTLKLE-HQLLPKSSAA 303
Score = 51.2 bits (121), Expect = 1e-06
Identities = 40/105 (38%), Positives = 45/105 (42%), Gaps = 39/105 (37%)
Query: 208 LGLQLQGPQTKTSASP----------------RVFRCTTLKLEHQLLSESPKT------- 244
+GLQLQGPQT TSA P RV RCT KLEH+L + SP
Sbjct: 1 MGLQLQGPQTGTSAPPPDLQLHGPQTGTSAPRRVSRCTACKLEHELPAGSPAAWPSNWNI 60
Query: 245 ---------------PVPPQVFSCKTLKLEKHQLLPGSTAARPSN 274
PP+ C L L+ HQL GS AAR SN
Sbjct: 61 SSPPDRQLHDPQTGISAPPRGSRCTALNLQ-HQLPTGSPAARLSN 104
>gi|239753760 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 267
Score = 112 bits (281), Expect = 3e-25
Identities = 91/220 (41%), Positives = 98/220 (44%), Gaps = 69/220 (31%)
Query: 123 KLTGKMNNTSSSP-GLQLHNPQTRTSAPPRVSSCKTLKLEHQLLPGSPAN-----NISSS 176
+L G TS+ P LQLH PQT TSAP RVS C KLEH+L GSPA NISS
Sbjct: 4 QLQGPQTGTSAPPPDLQLHGPQTGTSAPRRVSRCTACKLEHELPAGSPAAWPSNWNISSP 63
Query: 177 PGLQLHDPQTRTSAPPCIFSSTTLNLEHH----------------SSLGLQLQGPQTKTS 220
P QLHDPQT SAPP T LNL+H S GLQL G QT TS
Sbjct: 64 PDRQLHDPQTGISAPPRGSRCTALNLQHQLPTGSPAARLSNRNICSPQGLQLHGSQTGTS 123
Query: 221 ASPRVFRCTTLKLEHQLLSESP-------------------------------------K 243
A RV CT L L+H L + SP
Sbjct: 124 APHRVSSCTVLNLQHWLPTRSPDARPSNCNISSPRVSSYTASTWNISSPPGLQLHGPQTA 183
Query: 244 TPVPPQVFSCKTLKLEKHQL--------LP-GSTAARPSN 274
T P +V C LKLE HQL LP GS ARPSN
Sbjct: 184 TLAPHRVSRCTALKLE-HQLPTGYTAAWLPAGSPGARPSN 222
Score = 90.9 bits (224), Expect = 1e-18
Identities = 71/189 (37%), Positives = 76/189 (40%), Gaps = 76/189 (40%)
Query: 130 NTSSSPGLQLHNPQTRTSAPPRVSSCKTLKLEHQLLPGSPA-----NNISSSPGLQLHDP 184
N SS P QLH+PQT SAPPR S C L L+HQL GSPA NI S GLQLH
Sbjct: 59 NISSPPDRQLHDPQTGISAPPRGSRCTALNLQHQLPTGSPAARLSNRNICSPQGLQLHGS 118
Query: 185 QTRTSAPPCIFSSTTLNLEH-------------------------------HSSLGLQLQ 213
QT TSAP + S T LNL+H S GLQL
Sbjct: 119 QTGTSAPHRVSSCTVLNLQHWLPTRSPDARPSNCNISSPRVSSYTASTWNISSPPGLQLH 178
Query: 214 GPQTKTSASPRVFRCTTLK----------------------------------------L 233
GPQT T A RV RCT LK L
Sbjct: 179 GPQTATLAPHRVSRCTALKLEHQLPTGYTAAWLPAGSPGARPSNCNISSCWVSSCTALKL 238
Query: 234 EHQLLSESP 242
EHQL + SP
Sbjct: 239 EHQLPARSP 247
Score = 51.2 bits (121), Expect = 1e-06
Identities = 40/105 (38%), Positives = 45/105 (42%), Gaps = 39/105 (37%)
Query: 208 LGLQLQGPQTKTSASP----------------RVFRCTTLKLEHQLLSESPKT------- 244
+GLQLQGPQT TSA P RV RCT KLEH+L + SP
Sbjct: 1 MGLQLQGPQTGTSAPPPDLQLHGPQTGTSAPRRVSRCTACKLEHELPAGSPAAWPSNWNI 60
Query: 245 ---------------PVPPQVFSCKTLKLEKHQLLPGSTAARPSN 274
PP+ C L L+ HQL GS AAR SN
Sbjct: 61 SSPPDRQLHDPQTGISAPPRGSRCTALNLQ-HQLPTGSPAARLSN 104
>gi|169172282 PREDICTED: similar to hCG1818014 [Homo sapiens]
Length = 127
Score = 77.0 bits (188), Expect = 2e-14
Identities = 45/80 (56%), Positives = 51/80 (63%), Gaps = 9/80 (11%)
Query: 78 IRGCTHHSSGAGPAGTGSFCDTCRITRLCEQTQLPELTEYQYQHQKLTGK--------MN 129
IRG TH S AGP G GSFCDT IT LCE TQLPELT+Y + K GK +
Sbjct: 41 IRGRTHRSREAGPTGRGSFCDTYCITGLCEVTQLPELTQY-HSTPKPHGKNPPRPSDLNS 99
Query: 130 NTSSSPGLQLHNPQTRTSAP 149
+T SSP LQL +PQT T+AP
Sbjct: 100 STGSSPDLQLPDPQTPTAAP 119
>gi|54607141 vacuolar protein sorting 13D isoform 2 [Homo sapiens]
Length = 4363
Score = 40.4 bits (93), Expect = 0.002
Identities = 48/212 (22%), Positives = 84/212 (39%), Gaps = 20/212 (9%)
Query: 64 TGCPAWSPLKTQSEIRGCTHHSSGAG--PAGTGSFCDTCRITRLCEQTQLPELTEYQYQH 121
TGC W T + R HS G P G G+F D + E ++++
Sbjct: 2871 TGCTLWFATLTTTPTRAALSHSGSPGVVPEGNGTFLDDTHNVSEWREVLTGEEIPFEFEA 2930
Query: 122 QKLTGKMNNTSSSPGLQLHNPQTRTSAPPRVSSCKTLKLEHQLLPGSPANNISSSPGLQL 181
+ GK+ + + L++H Q R + +VS K+ +P N SSS +
Sbjct: 2931 R---GKLRHRHTH-DLRIHQLQVRVNGWEQVSPVSVDKVGTFFRYAAPDKNSSSS---TI 2983
Query: 182 HDPQTRTS-APPCIFSSTTLNLEHHSSLGLQLQGPQTKTSASPRVFRCTTLKLEHQLLSE 240
P +RT+ P ++ S+ + ++ ++ + T S + R L+ +L +
Sbjct: 2984 GSPSSRTNIIHPQVYFSSLPPVRVVFAVTMEGSARKVITVRSALIVR-NRLETPMELRLD 3042
Query: 241 SPKTPVPPQVFSCKTLKLEKHQLLPGSTAARP 272
SP P P V ++PG + A P
Sbjct: 3043 SPSAPDKPVVLPA---------IMPGDSFAVP 3065
>gi|54607139 vacuolar protein sorting 13D isoform 1 [Homo sapiens]
Length = 4388
Score = 40.4 bits (93), Expect = 0.002
Identities = 48/212 (22%), Positives = 84/212 (39%), Gaps = 20/212 (9%)
Query: 64 TGCPAWSPLKTQSEIRGCTHHSSGAG--PAGTGSFCDTCRITRLCEQTQLPELTEYQYQH 121
TGC W T + R HS G P G G+F D + E ++++
Sbjct: 2896 TGCTLWFATLTTTPTRAALSHSGSPGVVPEGNGTFLDDTHNVSEWREVLTGEEIPFEFEA 2955
Query: 122 QKLTGKMNNTSSSPGLQLHNPQTRTSAPPRVSSCKTLKLEHQLLPGSPANNISSSPGLQL 181
+ GK+ + + L++H Q R + +VS K+ +P N SSS +
Sbjct: 2956 R---GKLRHRHTH-DLRIHQLQVRVNGWEQVSPVSVDKVGTFFRYAAPDKNSSSS---TI 3008
Query: 182 HDPQTRTS-APPCIFSSTTLNLEHHSSLGLQLQGPQTKTSASPRVFRCTTLKLEHQLLSE 240
P +RT+ P ++ S+ + ++ ++ + T S + R L+ +L +
Sbjct: 3009 GSPSSRTNIIHPQVYFSSLPPVRVVFAVTMEGSARKVITVRSALIVR-NRLETPMELRLD 3067
Query: 241 SPKTPVPPQVFSCKTLKLEKHQLLPGSTAARP 272
SP P P V ++PG + A P
Sbjct: 3068 SPSAPDKPVVLPA---------IMPGDSFAVP 3090
>gi|31543535 R3H domain containing 1 [Homo sapiens]
Length = 1099
Score = 38.1 bits (87), Expect = 0.008
Identities = 35/127 (27%), Positives = 51/127 (40%), Gaps = 23/127 (18%)
Query: 126 GKMNNTSSSPGLQLHNPQTRTSAPPRVSSCKTLKLE-HQLLPGSPANNISSSPGLQL--- 181
G+ NN SSS G H + P S C + +L+ HQ G P +QL
Sbjct: 779 GQQNNLSSSVGYLQHPGSEQVQFPRTTSPCSSQQLQGHQCTAGPPPPPGGGMVMMQLSVP 838
Query: 182 HDPQTRTSAPP----------------CIFSSTTLNLEHHSSLGLQLQGPQTKTSASPRV 225
++PQ+ +PP C+ S+ N+ HS QL P + SP
Sbjct: 839 NNPQSCAHSPPQWKQNKYYCDHQRGQKCVEFSSVDNIVQHSP---QLSSPIISPAQSPAP 895
Query: 226 FRCTTLK 232
+ +TLK
Sbjct: 896 AQLSTLK 902
>gi|56549696 E1A binding protein p400 [Homo sapiens]
Length = 3122
Score = 34.3 bits (77), Expect = 0.12
Identities = 29/127 (22%), Positives = 48/127 (37%), Gaps = 27/127 (21%)
Query: 107 EQTQLPELTEYQYQHQKLTGKMNNTSSSPGLQLHNPQTRTSAPPRVSSCKTLKLEH---- 162
+Q Q + + Q Q Q+ + T+++ +Q+ Q + +P ++ + L EH
Sbjct: 2724 QQQQQQQQQQQQQQQQQQQQQQQQTTTTSQVQVPQIQGQAQSPAQIKAVGKLTPEHLIKM 2783
Query: 163 -----QLLPGSPANNISSSPGLQLHDPQTRTSAPPCIFSSTTLNLEHHSSLGLQLQGPQT 217
Q+ P P S+P Q +TS PP Q Q PQ
Sbjct: 2784 QKQKLQMPPQPPPPQAQSAPPQPTAQVQVQTSQPP------------------QQQSPQL 2825
Query: 218 KTSASPR 224
T +PR
Sbjct: 2826 TTVTAPR 2832
>gi|239756035 PREDICTED: hypothetical protein XP_002344789 [Homo
sapiens]
Length = 205
Score = 33.5 bits (75), Expect = 0.21
Identities = 29/103 (28%), Positives = 40/103 (38%), Gaps = 16/103 (15%)
Query: 13 GICSSPHPMQFPSSWSGLPVSFRGCLSAGAVLVHRGVPWAC-PCGKVRTVMLTGCPAWSP 71
G +P P+ P SW +P GA L +PWA P +V GC + S
Sbjct: 3 GPLMAPRPVDLPGSWGDVP-------DLGAALTLMLMPWAVRPRRRVSHASSRGCLSRSC 55
Query: 72 LKTQSEIRGCTHHSSGAGPAGTGSFC--DTCRITRLCEQTQLP 112
+ S + +SG A +FC T T C+ LP
Sbjct: 56 CRRASPV------ASGMASANCRTFCRNRTSSSTTPCKVASLP 92
>gi|239750577 PREDICTED: hypothetical protein XP_002347459 [Homo
sapiens]
Length = 205
Score = 33.5 bits (75), Expect = 0.21
Identities = 29/103 (28%), Positives = 40/103 (38%), Gaps = 16/103 (15%)
Query: 13 GICSSPHPMQFPSSWSGLPVSFRGCLSAGAVLVHRGVPWAC-PCGKVRTVMLTGCPAWSP 71
G +P P+ P SW +P GA L +PWA P +V GC + S
Sbjct: 3 GPLMAPRPVDLPGSWGDVP-------DLGAALTLMLMPWAVRPRRRVSHASSRGCLSRSC 55
Query: 72 LKTQSEIRGCTHHSSGAGPAGTGSFC--DTCRITRLCEQTQLP 112
+ S + +SG A +FC T T C+ LP
Sbjct: 56 CRRASPV------ASGMASANCRTFCRNRTSSSTTPCKVASLP 92
>gi|239744876 PREDICTED: hypothetical protein XP_002344118 [Homo
sapiens]
Length = 205
Score = 33.5 bits (75), Expect = 0.21
Identities = 29/103 (28%), Positives = 40/103 (38%), Gaps = 16/103 (15%)
Query: 13 GICSSPHPMQFPSSWSGLPVSFRGCLSAGAVLVHRGVPWAC-PCGKVRTVMLTGCPAWSP 71
G +P P+ P SW +P GA L +PWA P +V GC + S
Sbjct: 3 GPLMAPRPVDLPGSWGDVP-------DLGAALTLMLMPWAVRPRRRVSHASSRGCLSRSC 55
Query: 72 LKTQSEIRGCTHHSSGAGPAGTGSFC--DTCRITRLCEQTQLP 112
+ S + +SG A +FC T T C+ LP
Sbjct: 56 CRRASPV------ASGMASANCRTFCRNRTSSSTTPCKVASLP 92
>gi|40805854 isthmin 2 homolog isoform 3 [Homo sapiens]
Length = 292
Score = 32.7 bits (73), Expect = 0.35
Identities = 38/127 (29%), Positives = 53/127 (41%), Gaps = 15/127 (11%)
Query: 147 SAPPRVSSCKTLKLEHQLLPGSPANNISSSPGLQLHDPQTRTSAPPCIFSSTTLNLEHHS 206
+ PPR L+LE Q LPG AN S+P +P T+ SA P L E +
Sbjct: 94 ATPPRTPEVTPLRLELQKLPGL-ANTTLSTP-----NPDTQASASP---DPRPLREEEEA 144
Query: 207 SLGLQLQGPQTKTSASPRVFRCTTLKLEHQLLSESPKTPVPPQVFSCKTLKLEKHQLLPG 266
L P+T A C T+ E L+ TP Q + L+L+K L
Sbjct: 145 RL-----LPRTHLQAELHQHGCWTV-TEPAALTPGNATPPRTQEVTPLLLELQKLPELVH 198
Query: 267 STAARPS 273
+T + P+
Sbjct: 199 ATLSTPN 205
Score = 31.2 bits (69), Expect = 1.0
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
Query: 112 PELTEYQYQHQKLTGKMNNTSSSPGLQLHNPQTRTSAPP 150
PE+T + + QKL G N T S+P NP T+ SA P
Sbjct: 100 PEVTPLRLELQKLPGLANTTLSTP-----NPDTQASASP 133
>gi|40805858 isthmin 2 homolog isoform 1 [Homo sapiens]
Length = 571
Score = 32.7 bits (73), Expect = 0.35
Identities = 38/127 (29%), Positives = 53/127 (41%), Gaps = 15/127 (11%)
Query: 147 SAPPRVSSCKTLKLEHQLLPGSPANNISSSPGLQLHDPQTRTSAPPCIFSSTTLNLEHHS 206
+ PPR L+LE Q LPG AN S+P +P T+ SA P L E +
Sbjct: 94 ATPPRTPEVTPLRLELQKLPGL-ANTTLSTP-----NPDTQASASP---DPRPLREEEEA 144
Query: 207 SLGLQLQGPQTKTSASPRVFRCTTLKLEHQLLSESPKTPVPPQVFSCKTLKLEKHQLLPG 266
L P+T A C T+ E L+ TP Q + L+L+K L
Sbjct: 145 RL-----LPRTHLQAELHQHGCWTV-TEPAALTPGNATPPRTQEVTPLLLELQKLPELVH 198
Query: 267 STAARPS 273
+T + P+
Sbjct: 199 ATLSTPN 205
Score = 31.2 bits (69), Expect = 1.0
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
Query: 112 PELTEYQYQHQKLTGKMNNTSSSPGLQLHNPQTRTSAPP 150
PE+T + + QKL G N T S+P NP T+ SA P
Sbjct: 100 PEVTPLRLELQKLPGLANTTLSTP-----NPDTQASASP 133
>gi|15529996 son of sevenless homolog 1 [Homo sapiens]
Length = 1333
Score = 32.3 bits (72), Expect = 0.46
Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 26/130 (20%)
Query: 134 SPGLQLHNPQTRTSAPPRVSSCKTLKLEHQLLPGSPANNISSSPGLQLHDPQTRTSAPPC 193
SPG++ NP+ T P + K+ + +P S + +S+P + P+T + PP
Sbjct: 1037 SPGVRPSNPRPGTMRHPTPLQQEPRKISYSRIPESETESTASAP----NSPRTPLTPPPA 1092
Query: 194 IFSSTTLNL-----EHHSS--------LGLQLQGPQTKTSASPRVFRCTTLKLEHQLLSE 240
+S+T ++ HSS + +Q+ P SAS L
Sbjct: 1093 SGASSTTDVCSVFDSDHSSPFHSSNDTVFIQVTLPHGPRSASVSSI---------SLTKG 1143
Query: 241 SPKTPVPPQV 250
+ + PVPP V
Sbjct: 1144 TDEVPVPPPV 1153
>gi|9506545 delta-like 4 protein precursor [Homo sapiens]
Length = 685
Score = 32.3 bits (72), Expect = 0.46
Identities = 26/98 (26%), Positives = 34/98 (34%), Gaps = 24/98 (24%)
Query: 13 GICSSPHPMQFPSSWSGLP----VSFRGCLSAGAVLVHRGVPWACPCGKVRTVMLTGCPA 68
G CS P W G + GC PW C C +
Sbjct: 231 GYCSKPAECLCRPGWQGRLCNECIPHNGCRHGTC-----STPWQCTCDE----------G 275
Query: 69 WSPLKTQSEIRGCTHHS---SGAGPAGTG--SFCDTCR 101
W L ++ CTHHS +GA + +G S+ TCR
Sbjct: 276 WGGLFCDQDLNYCTHHSPCKNGATCSNSGQRSYTCTCR 313
>gi|112789562 interferon, gamma-inducible protein 16 [Homo sapiens]
Length = 729
Score = 32.3 bits (72), Expect = 0.46
Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
Query: 125 TGKMNNTSSSPGLQLHNPQTRTSAPPRVSSCKTLKLEHQLLPGSPANNISSSPGLQLHDP 184
T K ++PG Q T+ A P+ S E Q P SPA S+ + P
Sbjct: 114 TVKTEGAEATPGAQKRKKSTKEKAGPKGSKVS----EEQTQPPSPAGAGMSTAMGRSPSP 169
Query: 185 QTRTSAPPCIFSSTTLN 201
+T SAPP SS+T N
Sbjct: 170 KTSLSAPP--NSSSTEN 184
>gi|32698714 hypothetical protein LOC284058 [Homo sapiens]
Length = 1105
Score = 32.3 bits (72), Expect = 0.46
Identities = 52/229 (22%), Positives = 82/229 (35%), Gaps = 33/229 (14%)
Query: 67 PAWSPLKTQSEIRGCTHHS-------SGAGPAGTGSFCDTCRITRLCEQTQLPELTEYQY 119
P+W + QS ++G S A A + C+ R T +P
Sbjct: 888 PSWREVDLQS-LKGSPDEENEEIEDLSDAAFAALHAKCEEMERARWLWTTSVPPQRRGSR 946
Query: 120 QHQKLTGKMNNTSSSPGLQLHNPQTRTSAPPRVSSCKTL-KLEHQLLPGSPAN-NISSSP 177
++ G+ ++P L NP T A P VSS +L + H P SP + + S+P
Sbjct: 947 SYRSSDGR-----TTPQLGSANPSTPQPASPDVSSSHSLSEYSHGQSPRSPISPELHSAP 1001
Query: 178 --------GLQLHDPQTRTSAPPCIFSSTTLNLEHHSSLGLQLQGPQT----KTSASPRV 225
L TR S P ++ + L PQ + A R
Sbjct: 1002 LTPVARDTPRHLASEDTRCSTPELGLDEQSVQPWERRTFPL-AHSPQAECEDQLDAQERA 1060
Query: 226 FRCTTLKLEHQLLSESPKTPVPPQVFSCKTLKLEKHQLLPGSTAARPSN 274
RCT + E+ P P + + L+ L+ +TA RP++
Sbjct: 1061 ARCTRRTSGSKTGRETEAAPTSPPI-----VPLKSRHLVAAATAQRPTH 1104
>gi|115430209 phosphatase and actin regulator 4 isoform 2 [Homo
sapiens]
Length = 712
Score = 32.3 bits (72), Expect = 0.46
Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 3/127 (2%)
Query: 122 QKLTGKMNNTSSSPGLQLHNPQTRTSAPPRVSSCKTLKLEHQLLPGSPANNISSSPGLQL 181
+ L ++ +T S P + + PP + + L H+ G + SS +
Sbjct: 149 EDLKKRLGSTGSQPNSEAESVPENVPKPPLLPPKRPLSSSHEASEGQAKDATSSGGTARF 208
Query: 182 HDPQTRTSAPPCIFSSTTLNLEHHSSLGLQLQGPQTKTSASPRVFRCTTLKLEHQLLSES 241
+ T+AP ++T+L + S+ P+T +A T L H + ++
Sbjct: 209 IISTSITTAPAATTAATSLAKTVNLSV-TPSPAPRTLPAAPASTNTTATPSLTHMVPAKQ 267
Query: 242 PKTPVPP 248
P P+PP
Sbjct: 268 P--PIPP 272
>gi|25121980 dispatched B [Homo sapiens]
Length = 1401
Score = 32.3 bits (72), Expect = 0.46
Identities = 34/147 (23%), Positives = 53/147 (36%), Gaps = 38/147 (25%)
Query: 90 PAGTGSFCDTCRITRLCEQTQLPELTEYQ---YQHQKLTGKMNNTSS--SPGLQLHNPQT 144
P G +C EQ +L L + + T K+++ S S LQLH+
Sbjct: 1149 PGSVGGMPGSCS-----EQYELQPLARRRSPSFDTSTATSKLSHRPSVLSEDLQLHDGPC 1203
Query: 145 RTSAPPRVSSCKTLKLEHQLL----------------------------PGSPANNISSS 176
+ PP +S + L L+HQ + G A + +S
Sbjct: 1204 CSRPPPAPASPRELLLDHQAVFSQCPALQTSSPYKQAGPSPKTRARQDSQGEEAEPLPAS 1263
Query: 177 PGLQLHDPQTRTSAPPCIFSSTTLNLE 203
P H P+ + + PP F S+ LE
Sbjct: 1264 PEAPAHSPKAKAADPPDGFCSSASTLE 1290
Score = 30.8 bits (68), Expect = 1.3
Identities = 37/132 (28%), Positives = 49/132 (37%), Gaps = 22/132 (16%)
Query: 142 PQTRTSAPPRVSSCKTLKLEHQLLPGSPANNISSSPGLQLHDPQTRTSAPPCIFSSTTLN 201
P R +P +S T KL H+ P+ S LQLHD + PP S L
Sbjct: 1167 PLARRRSPSFDTSTATSKLSHR-----PS---VLSEDLQLHDGPCCSRPPPAPASPRELL 1218
Query: 202 LEHHSSL----GLQLQGPQTKTSASPRV-FRCTTLKLEHQLLSESPKTPV---------P 247
L+H + LQ P + SP+ R + E + L SP+ P P
Sbjct: 1219 LDHQAVFSQCPALQTSSPYKQAGPSPKTRARQDSQGEEAEPLPASPEAPAHSPKAKAADP 1278
Query: 248 PQVFSCKTLKLE 259
P F LE
Sbjct: 1279 PDGFCSSASTLE 1290
>gi|115430211 phosphatase and actin regulator 4 isoform 1 [Homo
sapiens]
Length = 702
Score = 32.3 bits (72), Expect = 0.46
Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 3/127 (2%)
Query: 122 QKLTGKMNNTSSSPGLQLHNPQTRTSAPPRVSSCKTLKLEHQLLPGSPANNISSSPGLQL 181
+ L ++ +T S P + + PP + + L H+ G + SS +
Sbjct: 139 EDLKKRLGSTGSQPNSEAESVPENVPKPPLLPPKRPLSSSHEASEGQAKDATSSGGTARF 198
Query: 182 HDPQTRTSAPPCIFSSTTLNLEHHSSLGLQLQGPQTKTSASPRVFRCTTLKLEHQLLSES 241
+ T+AP ++T+L + S+ P+T +A T L H + ++
Sbjct: 199 IISTSITTAPAATTAATSLAKTVNLSV-TPSPAPRTLPAAPASTNTTATPSLTHMVPAKQ 257
Query: 242 PKTPVPP 248
P P+PP
Sbjct: 258 P--PIPP 262
>gi|114431248 hypothetical protein LOC205717 [Homo sapiens]
Length = 2245
Score = 32.0 bits (71), Expect = 0.60
Identities = 41/149 (27%), Positives = 56/149 (37%), Gaps = 27/149 (18%)
Query: 128 MNNTSSSPGLQLHNP--QTRTSAPPRVSSCKTLKLEHQLLPGSPANNISSSPGLQLHDPQ 185
+ S S G++ N Q TS PP ++S L HQ S ++ ++S GL Q
Sbjct: 1210 LEKPSCSLGIKTSNASLQDSTSQPPSITSLSVNNLIHQ---SSISHPLASCAGLSPTSEQ 1266
Query: 186 TRTSAPPCIFSSTTLNLE-HHSSLGLQLQGPQTKTSASPRVFRCTT------------LK 232
T A T+NL SS G Q GP T S T LK
Sbjct: 1267 TTVPA--------TVNLTVSSSSYGSQPPGPSLMTEYSQEQLNTMTSTIPNSQIQEPLLK 1318
Query: 233 LEHQLLSESPKTPVPPQVFSCKTLKLEKH 261
H+ +S K V + + K +KH
Sbjct: 1319 PSHESRKDSAKRAVQDDLL-LSSAKRQKH 1346
>gi|21618327 forkhead box I1 isoform a [Homo sapiens]
Length = 378
Score = 32.0 bits (71), Expect = 0.60
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 133 SSPGLQLHNPQTRTSAPPRVSSCKTLKLEHQ---LLPGSPANNISSSPGLQLHDPQTRTS 189
+SPG +P+ R S PP + C L + GSP ++ +PGL +P +T
Sbjct: 255 ASPGGTTSSPEKRPSPPPSGAPCLNSFLSSMTAYVSGGSPTSHPLVTPGLS-PEPSDKTG 313
Query: 190 APPCIFSSTT--LNLEHHSSLG 209
F+S + NL +HS G
Sbjct: 314 QNSLTFNSFSPLTNLSNHSGGG 335
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 32.0 bits (71), Expect = 0.60
Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 19/113 (16%)
Query: 120 QHQKLTGKMNNTSSSPGLQLHNPQTRTSAPPRVSSCKTLKLEHQLLPGSPANNISSSPGL 179
Q K + +++SSSP +P+ ++ PPR S + + Q + + SSP
Sbjct: 825 QKSKTPSRQSHSSSSP-----HPKVKSGTPPRQGSITSPQANEQSVTPQRRSCFESSPDP 879
Query: 180 QLHDPQTRT--------SAPPCIFSSTTLNLEHHSSLGLQLQGPQTKTSASPR 224
+L ++RT S+PP + SST S Q P+ K SPR
Sbjct: 880 EL---KSRTPSRHSCSGSSPPRVKSSTPPRQSPSRSSSPQ---PKVKAIISPR 926
>gi|222418647 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 31.6 bits (70), Expect = 0.78
Identities = 45/176 (25%), Positives = 64/176 (36%), Gaps = 24/176 (13%)
Query: 109 TQLPELTEYQYQHQKLTGKMN-NTSSSPG----LQLHNPQTRTSAPPRVSSC------KT 157
T LP +T ++ + N NTSSS + PQ T+APP S+ +
Sbjct: 124 TTLPNVTFLPQNATTISSRENVNTSSSVATLAPVNSPAPQDTTAAPPTPSATTPAPPSSS 183
Query: 158 LKLEHQLLPGSPANNISSSPGLQLHDPQTRTSAPPCIFSSTTLNLEHHSSLGLQLQGPQT 217
E P +P+ + P P T+APP ++T + P
Sbjct: 184 APPETTAAPPTPSATTQAPPSSSA--PPETTAAPPTPPATTPAPPSSSA--------PPE 233
Query: 218 KTSASPRVFRCTTLKLEHQLLSESPKTPVPPQVFSCKTLKLEKHQLLPGSTAARPS 273
T+A P T L S P+T P S TL P +TAA P+
Sbjct: 234 TTAAPPTPSATTPAPLSS---SAPPETTAVPPTPSATTLDPSSASAPPETTAAPPT 286
>gi|222418649 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 31.6 bits (70), Expect = 0.78
Identities = 45/176 (25%), Positives = 64/176 (36%), Gaps = 24/176 (13%)
Query: 109 TQLPELTEYQYQHQKLTGKMN-NTSSSPG----LQLHNPQTRTSAPPRVSSC------KT 157
T LP +T ++ + N NTSSS + PQ T+APP S+ +
Sbjct: 124 TTLPNVTFLPQNATTISSRENVNTSSSVATLAPVNSPAPQDTTAAPPTPSATTPAPPSSS 183
Query: 158 LKLEHQLLPGSPANNISSSPGLQLHDPQTRTSAPPCIFSSTTLNLEHHSSLGLQLQGPQT 217
E P +P+ + P P T+APP ++T + P
Sbjct: 184 APPETTAAPPTPSATTQAPPSSSA--PPETTAAPPTPPATTPAPPSSSA--------PPE 233
Query: 218 KTSASPRVFRCTTLKLEHQLLSESPKTPVPPQVFSCKTLKLEKHQLLPGSTAARPS 273
T+A P T L S P+T P S TL P +TAA P+
Sbjct: 234 TTAAPPTPSATTPAPLSS---SAPPETTAVPPTPSATTLDPSSASAPPETTAAPPT 286
>gi|222418645 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 31.6 bits (70), Expect = 0.78
Identities = 45/176 (25%), Positives = 64/176 (36%), Gaps = 24/176 (13%)
Query: 109 TQLPELTEYQYQHQKLTGKMN-NTSSSPG----LQLHNPQTRTSAPPRVSSC------KT 157
T LP +T ++ + N NTSSS + PQ T+APP S+ +
Sbjct: 124 TTLPNVTFLPQNATTISSRENVNTSSSVATLAPVNSPAPQDTTAAPPTPSATTPAPPSSS 183
Query: 158 LKLEHQLLPGSPANNISSSPGLQLHDPQTRTSAPPCIFSSTTLNLEHHSSLGLQLQGPQT 217
E P +P+ + P P T+APP ++T + P
Sbjct: 184 APPETTAAPPTPSATTQAPPSSSA--PPETTAAPPTPPATTPAPPSSSA--------PPE 233
Query: 218 KTSASPRVFRCTTLKLEHQLLSESPKTPVPPQVFSCKTLKLEKHQLLPGSTAARPS 273
T+A P T L S P+T P S TL P +TAA P+
Sbjct: 234 TTAAPPTPSATTPAPLSS---SAPPETTAVPPTPSATTLDPSSASAPPETTAAPPT 286
>gi|11991660 sema domain, transmembrane domain (TM), and cytoplasmic
domain, (semaphorin) 6A [Homo sapiens]
Length = 1030
Score = 31.6 bits (70), Expect = 0.78
Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 10/74 (13%)
Query: 121 HQKLTGKMNNTSSSPGLQLHNPQT------RTSAPPRVSSCKTLKLEHQLLPGSPANNIS 174
HQ T K NNT+SS L Q+ AP RV S + H P A +S
Sbjct: 929 HQATTLKRNNTNSSNSSHLSRNQSFGRGDNPPPAPQRVDSIQV----HSSQPSGQAVTVS 984
Query: 175 SSPGLQLHDPQTRT 188
P L ++ TR+
Sbjct: 985 RQPSLNAYNSLTRS 998
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.130 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,287,163
Number of Sequences: 37866
Number of extensions: 668726
Number of successful extensions: 2181
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 66
Number of HSP's that attempted gapping in prelim test: 2003
Number of HSP's gapped (non-prelim): 129
length of query: 274
length of database: 18,247,518
effective HSP length: 101
effective length of query: 173
effective length of database: 14,423,052
effective search space: 2495187996
effective search space used: 2495187996
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.