Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100292270 Sequence: fasta or formatted (132aa) NCBI GI: 239754742
Description:

PREDICTED: similar to hCG2002958

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         10           1
 C cysteine            2.3          3           1
 D aspartate           6.1          8           1
 E glutamate           3.0          4           1
 F phenylalanine       4.5          6           2
 G glycine             7.6         10           1
 H histidine           2.3          3           1
 I isoleucine          4.5          6           1
 K lysine              4.5          6           1
 L leucine             9.8         13           2
 M methionine          3.0          4           1
 N asparagine          2.3          3           1
 P proline             3.8          5           2
 Q glutamine           6.1          8           1
 R arginine            5.3          7           1
 S serine              9.8         13           1
 T threonine           7.6         10           1
 V valine              2.3          3           1
 W tryptophan          1.5          2           1
 Y tyrosine            6.1          8           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2002958 
LOC647343             0.406   PREDICTED: similar to hCG2039484 
LOC100293705          0.394   PREDICTED: similar to hCG2043257 
LOC100290084          0.221   PREDICTED: hypothetical protein XP_002346976 
LOC100293499          0.201   PREDICTED: similar to hCG1737379 
LOC100293435          0.201   PREDICTED: similar to hCG1737376 
LOC100290747          0.201   PREDICTED: hypothetical protein XP_002346978 
LOC100293406          0.189   PREDICTED: similar to hCG2002986 
LOC100293590          0.177   PREDICTED: similar to hCG2039504 
LOC100293467          0.141   PREDICTED: similar to hCG1737378 
LOC100293560          0.124   PREDICTED: similar to hCG2039503 
LOC100293352          0.120   PREDICTED: similar to hCG1737365 
LOC100290634          0.120   PREDICTED: hypothetical protein XP_002346977 
LOC100293532          0.100   PREDICTED: similar to hCG2002964 
LOC642838             0.084   PREDICTED: similar to hCG1742442 
LOC100287723          0.084   PREDICTED: hypothetical protein XP_002342271 
LOC100293640          0.080   PREDICTED: similar to hCG2039506 
LOC642424             0.076   PREDICTED: similar to hCG1742442 
LOC642424             0.076   PREDICTED: similar to hCG1742442 
LOC642424             0.076   PREDICTED: similar to hCG1742442 
LOC100130100          0.072   PREDICTED: similar to hCG26659 
LOC100291682          0.072   PREDICTED: similar to hCG1686089 
LOC100290992          0.072   PREDICTED: hypothetical protein XP_002347049 
LOC100291464          0.072   PREDICTED: hypothetical protein XP_002346449 
LOC100130100          0.072   PREDICTED: similar to hCG26659 
LOC100291786          0.068   PREDICTED: similar to hCG2043206 
LOC650405             0.068   PREDICTED: similar to hCG2042707 
LOC100293440          0.064   PREDICTED: similar to Ig lambda chain 
LOC652493             0.064   PREDICTED: similar to pre-B lymphocyte gene 1 [Homo...
VPREB1                0.064   immunoglobulin iota chain precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press