Guide to the Human Genome
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Name: LOC100293352 Sequence: fasta or formatted (147aa) NCBI GI: 239754724
Description:

PREDICTED: similar to hCG1737365

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         12           1
 C cysteine            3.4          5           1
 D aspartate           6.8         10           2
 E glutamate           7.5         11           2
 F phenylalanine       2.0          3           1
 G glycine             4.8          7           1
 H histidine           2.0          3           1
 I isoleucine          4.1          6           2
 K lysine              4.8          7           2
 L leucine            12.9         19           2
 M methionine          1.4          2           1
 N asparagine          2.7          4           1
 P proline             8.2         12           1
 Q glutamine           4.8          7           1
 R arginine            3.4          5           1
 S serine              8.2         12           2
 T threonine           3.4          5           1
 V valine              6.1          9           2
 W tryptophan          2.0          3           1
 Y tyrosine            3.4          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1737365 
LOC100290634          0.782   PREDICTED: hypothetical protein XP_002346977 
LOC100290084          0.550   PREDICTED: hypothetical protein XP_002346976 
LOC100293435          0.379   PREDICTED: similar to hCG1737376 
LOC100293406          0.357   PREDICTED: similar to hCG2002986 
LOC100293467          0.314   PREDICTED: similar to hCG1737378 
LOC100293560          0.304   PREDICTED: similar to hCG2039503 
LOC100293590          0.282   PREDICTED: similar to hCG2039504 
LOC100293499          0.225   PREDICTED: similar to hCG1737379 
LOC100290747          0.225   PREDICTED: hypothetical protein XP_002346978 
LOC100293532          0.218   PREDICTED: similar to hCG2002964 
LOC647343             0.175   PREDICTED: similar to hCG2039484 
LOC100293705          0.136   PREDICTED: similar to hCG2043257 
LOC100292270          0.107   PREDICTED: similar to hCG2002958 
LOC100290481          0.054   PREDICTED: hypothetical protein XP_002348153 
LOC100293277          0.050   PREDICTED: similar to hCG2040021 
VPREB1                0.043   immunoglobulin iota chain precursor 
LOC100130100          0.036   PREDICTED: similar to hCG26659 
LOC100291464          0.036   PREDICTED: hypothetical protein XP_002346449 
LOC100130100          0.036   PREDICTED: similar to hCG26659 
VPREB3                0.036   pre-B lymphocyte 3 
LOC651536             0.036   PREDICTED: similar to hCG96018 
LOC100293142          0.036   PREDICTED: similar to hCG2040019 
LOC100291682          0.036   PREDICTED: similar to hCG1686089 
LOC651536             0.036   PREDICTED: similar to hCG96018 
LOC100290992          0.036   PREDICTED: hypothetical protein XP_002347049 
LOC100287723          0.036   PREDICTED: hypothetical protein XP_002342271 
LOC100293440          0.032   PREDICTED: similar to Ig lambda chain 
LOC642424             0.032   PREDICTED: similar to hCG1742442 
LOC100293640          0.032   PREDICTED: similar to hCG2039506 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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