Guide to the Human Genome
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Name: LOC100293406 Sequence: fasta or formatted (189aa) NCBI GI: 239754726
Description:

PREDICTED: similar to hCG2002986

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         12           1
 C cysteine            5.3         10           2
 D aspartate           4.8          9           2
 E glutamate           3.2          6           1
 F phenylalanine       6.9         13           1
 G glycine             4.2          8           1
 H histidine           3.2          6           1
 I isoleucine          4.2          8           1
 K lysine              3.7          7           1
 L leucine             7.9         15           2
 M methionine          4.2          8           2
 N asparagine          3.2          6           3
 P proline             7.9         15           2
 Q glutamine           4.2          8           1
 R arginine            3.7          7           1
 S serine             12.2         23           2
 T threonine           4.2          8           1
 V valine              5.8         11           1
 W tryptophan          2.1          4           1
 Y tyrosine            2.6          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2002986 
LOC100293435          0.488   PREDICTED: similar to hCG1737376 
LOC100290084          0.316   PREDICTED: hypothetical protein XP_002346976 
LOC100293560          0.300   PREDICTED: similar to hCG2039503 
LOC100293590          0.286   PREDICTED: similar to hCG2039504 
LOC100293352          0.265   PREDICTED: similar to hCG1737365 
LOC100293467          0.263   PREDICTED: similar to hCG1737378 
LOC100290634          0.257   PREDICTED: hypothetical protein XP_002346977 
LOC100293532          0.210   PREDICTED: similar to hCG2002964 
LOC100293499          0.183   PREDICTED: similar to hCG1737379 
LOC100290747          0.183   PREDICTED: hypothetical protein XP_002346978 
LOC647343             0.138   PREDICTED: similar to hCG2039484 
LOC100292270          0.125   PREDICTED: similar to hCG2002958 
LOC100293705          0.101   PREDICTED: similar to hCG2043257 
LOC652493             0.064   PREDICTED: similar to pre-B lymphocyte gene 1 [Homo...
LOC100130100          0.058   PREDICTED: similar to hCG26659 
LOC100291464          0.058   PREDICTED: hypothetical protein XP_002346449 
LOC100130100          0.058   PREDICTED: similar to hCG26659 
LOC100287723          0.058   PREDICTED: hypothetical protein XP_002342271 
LOC100293640          0.058   PREDICTED: similar to hCG2039506 
LOC100290481          0.058   PREDICTED: hypothetical protein XP_002348153 
LOC642838             0.056   PREDICTED: similar to hCG1742442 
LOC642424             0.056   PREDICTED: similar to hCG1742442 
LOC642424             0.056   PREDICTED: similar to hCG1742442 
LOC650405             0.056   PREDICTED: similar to hCG2042707 
LOC642424             0.056   PREDICTED: similar to hCG1742442 
LOC100132426          0.053   PREDICTED: similar to hCG1742442 
LOC100288993          0.053   PREDICTED: hypothetical protein XP_002342967 
LOC100291682          0.050   PREDICTED: similar to hCG1686089 
LOC100290992          0.050   PREDICTED: hypothetical protein XP_002347049 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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