Guide to the Human Genome
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Name: LOC100293640 Sequence: fasta or formatted (170aa) NCBI GI: 239754740
Description:

PREDICTED: similar to hCG2039506

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         12           1
 C cysteine            1.8          3           1
 D aspartate           2.9          5           1
 E glutamate           5.9         10           1
 F phenylalanine       2.9          5           1
 G glycine             8.2         14           2
 H histidine           1.8          3           1
 I isoleucine          2.4          4           1
 K lysine              4.7          8           1
 L leucine            11.8         20           7
 M methionine          2.9          5           1
 N asparagine          1.8          3           1
 P proline             7.6         13           1
 Q glutamine           5.3          9           1
 R arginine            4.7          8           1
 S serine             11.8         20           2
 T threonine           7.6         13           2
 V valine              5.9         10           2
 W tryptophan          1.2          2           1
 Y tyrosine            1.8          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2039506 
LOC100290084          0.098   PREDICTED: hypothetical protein XP_002346976 
LOC100293435          0.091   PREDICTED: similar to hCG1737376 
LOC100293467          0.079   PREDICTED: similar to hCG1737378 
LOC652493             0.079   PREDICTED: similar to pre-B lymphocyte gene 1 [Homo...
LOC100288993          0.079   PREDICTED: hypothetical protein XP_002342967 
LOC642424             0.076   PREDICTED: similar to hCG1742442 
LOC642424             0.076   PREDICTED: similar to hCG1742442 
LOC650405             0.076   PREDICTED: similar to hCG2042707 
LOC642424             0.076   PREDICTED: similar to hCG1742442 
LOC100132426          0.076   PREDICTED: similar to hCG1742442 
LOC100293406          0.069   PREDICTED: similar to hCG2002986 
LOC100287723          0.069   PREDICTED: hypothetical protein XP_002342271 
LOC642838             0.066   PREDICTED: similar to hCG1742442 
LOC100130100          0.066   PREDICTED: similar to hCG26659 
LOC100291464          0.066   PREDICTED: hypothetical protein XP_002346449 
LOC100130100          0.066   PREDICTED: similar to hCG26659 
LOC100293560          0.063   PREDICTED: similar to hCG2039503 
LOC100293211          0.063   PREDICTED: similar to hCG2042717 
LOC100292270          0.063   PREDICTED: similar to hCG2002958 
LOC647343             0.063   PREDICTED: similar to hCG2039484 
LOC100289290          0.063   PREDICTED: hypothetical protein XP_002343511 
LOC439957             0.054   PREDICTED: similar to hCG1742442 
LOC439957             0.054   PREDICTED: similar to hCG1742442 
LOC100293590          0.050   PREDICTED: similar to hCG2039504 
LOC440871             0.050   PREDICTED: similar to hCG2043206 
LOC100291786          0.050   PREDICTED: similar to hCG2043206 
LOC100293705          0.047   PREDICTED: similar to hCG2043257 
LOC100290146          0.047   PREDICTED: hypothetical protein XP_002347524 
LOC100293532          0.047   PREDICTED: similar to hCG2002964 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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