Guide to the Human Genome
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Name: LOC100130100 Sequence: fasta or formatted (191aa) NCBI GI: 169163724
Description:

PREDICTED: similar to hCG26659

Not currently referenced in the text

Other entries for this name:
alt mRNA {191aa} PREDICTED: similar to hCG26659
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         12           2
 C cysteine            3.1          6           1
 D aspartate           3.1          6           1
 E glutamate           2.1          4           1
 F phenylalanine       3.1          6           1
 G glycine             5.8         11           1
 H histidine           2.1          4           1
 I isoleucine          3.1          6           1
 K lysine              2.1          4           1
 L leucine            13.1         25           4
 M methionine          1.6          3           1
 N asparagine          1.0          2           1
 P proline             7.3         14           2
 Q glutamine           7.3         14           2
 R arginine            4.7          9           1
 S serine             14.1         27           2
 T threonine           8.9         17           2
 V valine              5.2         10           1
 W tryptophan          1.6          3           1
 Y tyrosine            4.2          8           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG26659 
LOC100130100          1.000   PREDICTED: similar to hCG26659 
LOC100291464          0.665   PREDICTED: hypothetical protein XP_002346449 
LOC650405             0.530   PREDICTED: similar to hCG2042707 
LOC642424             0.492   PREDICTED: similar to hCG1742442 
LOC652493             0.492   PREDICTED: similar to pre-B lymphocyte gene 1 [Homo...
LOC642424             0.492   PREDICTED: similar to hCG1742442 
LOC642424             0.492   PREDICTED: similar to hCG1742442 
LOC100287723          0.489   PREDICTED: hypothetical protein XP_002342271 
LOC642838             0.475   PREDICTED: similar to hCG1742442 
LOC439957             0.462   PREDICTED: similar to hCG1742442 
LOC439957             0.462   PREDICTED: similar to hCG1742442 
LOC100288993          0.456   PREDICTED: hypothetical protein XP_002342967 
LOC100132426          0.453   PREDICTED: similar to hCG1742442 
LOC440871             0.396   PREDICTED: similar to hCG2043206 
LOC100291786          0.385   PREDICTED: similar to hCG2043206 
LOC100291731          0.374   PREDICTED: similar to hCG36857 
LOC100290819          0.374   PREDICTED: hypothetical protein XP_002348319 
LOC100291682          0.352   PREDICTED: similar to hCG1686089 
LOC100290992          0.352   PREDICTED: hypothetical protein XP_002347049 
LOC100291027          0.349   PREDICTED: hypothetical protein XP_002348323 
LOC100128009          0.305   PREDICTED: hypothetical protein 
LOC100128009          0.305   PREDICTED: hypothetical protein 
LOC100128009          0.305   PREDICTED: hypothetical protein 
LOC100293142          0.190   PREDICTED: similar to hCG2040019 
LOC100290481          0.184   PREDICTED: hypothetical protein XP_002348153 
LOC100293440          0.176   PREDICTED: similar to Ig lambda chain 
LOC100293277          0.168   PREDICTED: similar to hCG2040021 
LOC651536             0.124   PREDICTED: similar to hCG96018 
LOC651536             0.124   PREDICTED: similar to hCG96018 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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