Guide to the Human Genome
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Name: LOC100293590 Sequence: fasta or formatted (182aa) NCBI GI: 239754738
Description:

PREDICTED: similar to hCG2039504

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         13           2
 C cysteine            3.8          7           2
 D aspartate           2.7          5           1
 E glutamate           4.9          9           2
 F phenylalanine       2.7          5           1
 G glycine             6.6         12           2
 H histidine           3.8          7           1
 I isoleucine          3.3          6           2
 K lysine              4.4          8           1
 L leucine             9.9         18           2
 M methionine          4.4          8           1
 N asparagine          2.7          5           1
 P proline             8.8         16           2
 Q glutamine           6.0         11           2
 R arginine            7.1         13           3
 S serine              7.7         14           2
 T threonine           1.1          2           1
 V valine              7.7         14           2
 W tryptophan          2.7          5           1
 Y tyrosine            2.2          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2039504 
LOC100293435          0.302   PREDICTED: similar to hCG1737376 
LOC100293406          0.299   PREDICTED: similar to hCG2002986 
LOC100290084          0.277   PREDICTED: hypothetical protein XP_002346976 
LOC100293532          0.274   PREDICTED: similar to hCG2002964 
LOC100293560          0.224   PREDICTED: similar to hCG2039503 
LOC100293352          0.219   PREDICTED: similar to hCG1737365 
LOC100293467          0.208   PREDICTED: similar to hCG1737378 
LOC100290634          0.208   PREDICTED: hypothetical protein XP_002346977 
LOC647343             0.152   PREDICTED: similar to hCG2039484 
LOC100293499          0.150   PREDICTED: similar to hCG1737379 
LOC100290747          0.150   PREDICTED: hypothetical protein XP_002346978 
LOC100292270          0.122   PREDICTED: similar to hCG2002958 
LOC100293705          0.114   PREDICTED: similar to hCG2043257 
LOC100293277          0.047   PREDICTED: similar to hCG2040021 
LOC100293640          0.044   PREDICTED: similar to hCG2039506 
LOC100290481          0.042   PREDICTED: hypothetical protein XP_002348153 
LOC642838             0.039   PREDICTED: similar to hCG1742442 
LOC100287723          0.039   PREDICTED: hypothetical protein XP_002342271 
LOC652493             0.036   PREDICTED: similar to pre-B lymphocyte gene 1 [Homo...
LOC100288993          0.036   PREDICTED: hypothetical protein XP_002342967 
LOC100132426          0.033   PREDICTED: similar to hCG1742442 
LOC651536             0.030   PREDICTED: similar to hCG96018 
LOC100293440          0.030   PREDICTED: similar to Ig lambda chain 
LOC651536             0.030   PREDICTED: similar to hCG96018 
LOC642424             0.028   PREDICTED: similar to hCG1742442 
LOC642424             0.028   PREDICTED: similar to hCG1742442 
LOC642424             0.028   PREDICTED: similar to hCG1742442 
LOC100291786          0.025   PREDICTED: similar to hCG2043206 
LOC440871             0.025   PREDICTED: similar to hCG2043206 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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