Guide to the Human Genome
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Name: LOC100293435 Sequence: fasta or formatted (170aa) NCBI GI: 239754728
Description:

PREDICTED: similar to hCG1737376

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         14           2
 C cysteine            3.5          6           2
 D aspartate           3.5          6           2
 E glutamate           4.7          8           2
 F phenylalanine       4.7          8           1
 G glycine             4.1          7           1
 H histidine           2.9          5           1
 I isoleucine          1.8          3           1
 K lysine              2.9          5           1
 L leucine            12.4         21           2
 M methionine          4.1          7           2
 N asparagine          2.4          4           1
 P proline             7.6         13           2
 Q glutamine           7.1         12           2
 R arginine            7.6         13           1
 S serine              5.9         10           3
 T threonine           6.5         11           1
 V valine              7.1         12           2
 W tryptophan          1.2          2           1
 Y tyrosine            1.8          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1737376 
LOC100293406          0.566   PREDICTED: similar to hCG2002986 
LOC100290084          0.357   PREDICTED: hypothetical protein XP_002346976 
LOC100293590          0.335   PREDICTED: similar to hCG2039504 
LOC100293352          0.326   PREDICTED: similar to hCG1737365 
LOC100290634          0.326   PREDICTED: hypothetical protein XP_002346977 
LOC100293560          0.314   PREDICTED: similar to hCG2039503 
LOC100293467          0.286   PREDICTED: similar to hCG1737378 
LOC100293532          0.231   PREDICTED: similar to hCG2002964 
LOC100293499          0.206   PREDICTED: similar to hCG1737379 
LOC100290747          0.206   PREDICTED: hypothetical protein XP_002346978 
LOC647343             0.160   PREDICTED: similar to hCG2039484 
LOC100292270          0.154   PREDICTED: similar to hCG2002958 
LOC100293705          0.123   PREDICTED: similar to hCG2043257 
LOC100293640          0.089   PREDICTED: similar to hCG2039506 
LOC100290481          0.077   PREDICTED: hypothetical protein XP_002348153 
LOC650405             0.071   PREDICTED: similar to hCG2042707 
LOC642424             0.068   PREDICTED: similar to hCG1742442 
LOC100130100          0.068   PREDICTED: similar to hCG26659 
LOC642424             0.068   PREDICTED: similar to hCG1742442 
LOC100291464          0.068   PREDICTED: hypothetical protein XP_002346449 
LOC642424             0.068   PREDICTED: similar to hCG1742442 
LOC100130100          0.068   PREDICTED: similar to hCG26659 
LOC100287723          0.065   PREDICTED: hypothetical protein XP_002342271 
LOC652493             0.055   PREDICTED: similar to pre-B lymphocyte gene 1 [Homo...
LOC100132426          0.055   PREDICTED: similar to hCG1742442 
LOC100288993          0.055   PREDICTED: hypothetical protein XP_002342967 
LOC642838             0.052   PREDICTED: similar to hCG1742442 
VPREB3                0.043   pre-B lymphocyte 3 
LOC100291731          0.040   PREDICTED: similar to hCG36857 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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