Guide to the Human Genome
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Name: LOC100290634 Sequence: fasta or formatted (118aa) NCBI GI: 239749277
Description:

PREDICTED: hypothetical protein XP_002346977

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8          8           1
 C cysteine            3.4          4           1
 D aspartate           5.1          6           2
 E glutamate           8.5         10           2
 F phenylalanine       2.5          3           1
 G glycine             5.9          7           1
 H histidine           0.8          1           1
 I isoleucine          5.1          6           2
 K lysine              5.1          6           2
 L leucine            13.6         16           2
 M methionine          0.8          1           1
 N asparagine          3.4          4           1
 P proline             5.1          6           1
 Q glutamine           5.1          6           1
 R arginine            4.2          5           1
 S serine              6.8          8           2
 T threonine           3.4          4           1
 V valine              7.6          9           2
 W tryptophan          2.5          3           1
 Y tyrosine            4.2          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346977 
LOC100293352          1.000   PREDICTED: similar to hCG1737365 
LOC100290084          0.493   PREDICTED: hypothetical protein XP_002346976 
LOC100293435          0.484   PREDICTED: similar to hCG1737376 
LOC100293406          0.443   PREDICTED: similar to hCG2002986 
LOC100293467          0.402   PREDICTED: similar to hCG1737378 
LOC100293560          0.388   PREDICTED: similar to hCG2039503 
LOC100293590          0.342   PREDICTED: similar to hCG2039504 
LOC100293499          0.288   PREDICTED: similar to hCG1737379 
LOC100290747          0.288   PREDICTED: hypothetical protein XP_002346978 
LOC100293532          0.279   PREDICTED: similar to hCG2002964 
LOC647343             0.201   PREDICTED: similar to hCG2039484 
LOC100293705          0.174   PREDICTED: similar to hCG2043257 
LOC100292270          0.137   PREDICTED: similar to hCG2002958 
LOC100290481          0.068   PREDICTED: hypothetical protein XP_002348153 
LOC100293277          0.064   PREDICTED: similar to hCG2040021 
VPREB1                0.055   immunoglobulin iota chain precursor 
LOC100130100          0.046   PREDICTED: similar to hCG26659 
LOC100291464          0.046   PREDICTED: hypothetical protein XP_002346449 
LOC100130100          0.046   PREDICTED: similar to hCG26659 
VPREB3                0.046   pre-B lymphocyte 3 
LOC651536             0.046   PREDICTED: similar to hCG96018 
LOC100293142          0.046   PREDICTED: similar to hCG2040019 
LOC100291682          0.046   PREDICTED: similar to hCG1686089 
LOC651536             0.046   PREDICTED: similar to hCG96018 
LOC100290992          0.046   PREDICTED: hypothetical protein XP_002347049 
LOC100287723          0.046   PREDICTED: hypothetical protein XP_002342271 
LOC100293440          0.041   PREDICTED: similar to Ig lambda chain 
LOC642424             0.041   PREDICTED: similar to hCG1742442 
LOC100293640          0.041   PREDICTED: similar to hCG2039506 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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