Guide to the Human Genome
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Name: VPREB3 Sequence: fasta or formatted (123aa) NCBI GI: 7019567
Description:

pre-B lymphocyte 3

Referenced in:

B cells

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.8         12           2
 C cysteine            4.1          5           1
 D aspartate           7.3          9           2
 E glutamate           3.3          4           2
 F phenylalanine       4.1          5           1
 G glycine             4.9          6           1
 H histidine           3.3          4           2
 I isoleucine          2.4          3           1
 K lysine              0.8          1           1
 L leucine            10.6         13           2
 M methionine          1.6          2           1
 N asparagine          0.8          1           1
 P proline             6.5          8           1
 Q glutamine           6.5          8           2
 R arginine            5.7          7           1
 S serine              9.8         12           1
 T threonine           4.1          5           1
 V valine              7.3          9           1
 W tryptophan          0.8          1           1
 Y tyrosine            6.5          8           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   pre-B lymphocyte 3 
LOC651536             0.319   PREDICTED: similar to hCG96018 
LOC651536             0.319   PREDICTED: similar to hCG96018 
VPREB1                0.267   immunoglobulin iota chain precursor 
LOC100293440          0.203   PREDICTED: similar to Ig lambda chain 
LOC100290481          0.198   PREDICTED: hypothetical protein XP_002348153 
LOC100293277          0.194   PREDICTED: similar to hCG2040021 
LOC100293142          0.181   PREDICTED: similar to hCG2040019 
LOC440871             0.168   PREDICTED: similar to hCG2043206 
LOC100291682          0.164   PREDICTED: similar to hCG1686089 
LOC100290992          0.164   PREDICTED: hypothetical protein XP_002347049 
LOC100291786          0.164   PREDICTED: similar to hCG2043206 
LOC100290006          0.147   PREDICTED: hypothetical protein XP_002347521 
LOC650405             0.129   PREDICTED: similar to hCG2042707 
LOC100293211          0.129   PREDICTED: similar to hCG2042717 
LOC100130100          0.116   PREDICTED: similar to hCG26659 
LOC100291464          0.116   PREDICTED: hypothetical protein XP_002346449 
LOC100130100          0.116   PREDICTED: similar to hCG26659 
LOC652493             0.108   PREDICTED: similar to pre-B lymphocyte gene 1 [Homo...
LOC642424             0.103   PREDICTED: similar to hCG1742442 
LOC642424             0.103   PREDICTED: similar to hCG1742442 
LOC642424             0.103   PREDICTED: similar to hCG1742442 
LOC100291190          0.103   PREDICTED: hypothetical protein XP_002347529 
LOC100287723          0.099   PREDICTED: hypothetical protein XP_002342271 
LOC642838             0.099   PREDICTED: similar to hCG1742442 
LOC100293270          0.095   PREDICTED: similar to hCG2042717 
LOC100290320          0.095   PREDICTED: hypothetical protein XP_002347525 
LOC652494             0.095   PREDICTED: similar to hCG2042717 
LOC100290115          0.095   PREDICTED: hypothetical protein XP_002347523 
LOC100291027          0.091   PREDICTED: hypothetical protein XP_002348323 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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