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Search of human proteins with 239754604
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239754604 PREDICTED: similar to hCG1802898 [Homo sapiens]
(229 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754604 PREDICTED: similar to hCG1802898 [Homo sapiens] 474 e-134
gi|239749150 PREDICTED: hypothetical protein XP_002346928 [Homo ... 470 e-133
gi|240255430 hypothetical protein LOC100289135 [Homo sapiens] 402 e-112
gi|153070256 MAGI family member, X-linked isoform d [Homo sapiens] 40 0.002
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 40 0.002
gi|153070252 MAGI family member, X-linked isoform c [Homo sapiens] 38 0.006
gi|153791497 ciliary rootlet coiled-coil [Homo sapiens] 37 0.011
gi|92091575 coiled-coil domain containing 57 [Homo sapiens] 37 0.011
gi|153070254 MAGI family member, X-linked isoform b [Homo sapiens] 37 0.011
gi|239753839 PREDICTED: hypothetical protein [Homo sapiens] 37 0.014
gi|111120318 NK6 transcription factor related, locus 1 [Homo sap... 37 0.018
gi|122937321 UNC homeobox [Homo sapiens] 37 0.018
gi|169168886 PREDICTED: hypothetical protein [Homo sapiens] 36 0.024
gi|239742988 PREDICTED: hypothetical protein [Homo sapiens] 36 0.024
gi|39812378 RAN binding protein 9 [Homo sapiens] 36 0.031
gi|122692281 hypothetical protein LOC645369 [Homo sapiens] 36 0.031
gi|153070258 MAGI family member, X-linked isoform a [Homo sapiens] 35 0.041
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 35 0.053
gi|239749077 PREDICTED: hypothetical protein XP_002346898 [Homo ... 35 0.053
gi|239743103 PREDICTED: hypothetical protein XP_002342755 [Homo ... 35 0.053
gi|239508758 PREDICTED: hypothetical protein [Homo sapiens] 35 0.053
gi|56549696 E1A binding protein p400 [Homo sapiens] 35 0.053
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 35 0.070
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 35 0.070
gi|162951873 ventral anterior homeobox 1 isoform a [Homo sapiens] 35 0.070
gi|38202246 syntaphilin [Homo sapiens] 35 0.070
gi|151301154 mucin 6, gastric [Homo sapiens] 34 0.091
gi|239744249 PREDICTED: similar to double homeobox, 4 [Homo sapi... 34 0.12
gi|239744248 PREDICTED: similar to double homeobox, 4 [Homo sapi... 34 0.12
gi|239744246 PREDICTED: hypothetical protein XP_002343082 [Homo ... 34 0.12
>gi|239754604 PREDICTED: similar to hCG1802898 [Homo sapiens]
Length = 229
Score = 474 bits (1220), Expect = e-134
Identities = 229/229 (100%), Positives = 229/229 (100%)
Query: 1 MVITGCLGRGGQNVSRQSGDRSTREAGMKEPPLQPKAPEVTFARRALRACAGGAGRAGKA 60
MVITGCLGRGGQNVSRQSGDRSTREAGMKEPPLQPKAPEVTFARRALRACAGGAGRAGKA
Sbjct: 1 MVITGCLGRGGQNVSRQSGDRSTREAGMKEPPLQPKAPEVTFARRALRACAGGAGRAGKA 60
Query: 61 GGVCEAGADWGAQTCRATWASGDLDHGADAGELRLGRQRTRGRVRGLSVQRARCRHLQRP 120
GGVCEAGADWGAQTCRATWASGDLDHGADAGELRLGRQRTRGRVRGLSVQRARCRHLQRP
Sbjct: 61 GGVCEAGADWGAQTCRATWASGDLDHGADAGELRLGRQRTRGRVRGLSVQRARCRHLQRP 120
Query: 121 AVPRRPDLDHFLAASLSGGSPRSGSHFPVQDAGSEATSVVARDPSQDLPGTRRDGTLGPR 180
AVPRRPDLDHFLAASLSGGSPRSGSHFPVQDAGSEATSVVARDPSQDLPGTRRDGTLGPR
Sbjct: 121 AVPRRPDLDHFLAASLSGGSPRSGSHFPVQDAGSEATSVVARDPSQDLPGTRRDGTLGPR 180
Query: 181 PQPPAAAGAPGFDPASPWGDRSVPELGGDLKPMVLTSTPWLRARLRGRG 229
PQPPAAAGAPGFDPASPWGDRSVPELGGDLKPMVLTSTPWLRARLRGRG
Sbjct: 181 PQPPAAAGAPGFDPASPWGDRSVPELGGDLKPMVLTSTPWLRARLRGRG 229
>gi|239749150 PREDICTED: hypothetical protein XP_002346928 [Homo
sapiens]
Length = 229
Score = 470 bits (1209), Expect = e-133
Identities = 227/229 (99%), Positives = 228/229 (99%)
Query: 1 MVITGCLGRGGQNVSRQSGDRSTREAGMKEPPLQPKAPEVTFARRALRACAGGAGRAGKA 60
MVITGCLGRGGQNVSRQSGDRSTREAGMKEPPLQPKAPEVTFARRALRACAGGAG AG+A
Sbjct: 1 MVITGCLGRGGQNVSRQSGDRSTREAGMKEPPLQPKAPEVTFARRALRACAGGAGGAGQA 60
Query: 61 GGVCEAGADWGAQTCRATWASGDLDHGADAGELRLGRQRTRGRVRGLSVQRARCRHLQRP 120
GGVCEAGADWGAQTCRATWASGDLDHGADAGELRLGRQRTRGRVRGLSVQRARCRHLQRP
Sbjct: 61 GGVCEAGADWGAQTCRATWASGDLDHGADAGELRLGRQRTRGRVRGLSVQRARCRHLQRP 120
Query: 121 AVPRRPDLDHFLAASLSGGSPRSGSHFPVQDAGSEATSVVARDPSQDLPGTRRDGTLGPR 180
AVPRRPDLDHFLAASLSGGSPRSGSHFPVQDAGSEATSVVARDPSQDLPGTRRDGTLGPR
Sbjct: 121 AVPRRPDLDHFLAASLSGGSPRSGSHFPVQDAGSEATSVVARDPSQDLPGTRRDGTLGPR 180
Query: 181 PQPPAAAGAPGFDPASPWGDRSVPELGGDLKPMVLTSTPWLRARLRGRG 229
PQPPAAAGAPGFDPASPWGDRSVPELGGDLKPMVLTSTPWLRARLRGRG
Sbjct: 181 PQPPAAAGAPGFDPASPWGDRSVPELGGDLKPMVLTSTPWLRARLRGRG 229
>gi|240255430 hypothetical protein LOC100289135 [Homo sapiens]
Length = 215
Score = 402 bits (1032), Expect = e-112
Identities = 193/195 (98%), Positives = 194/195 (99%)
Query: 35 PKAPEVTFARRALRACAGGAGRAGKAGGVCEAGADWGAQTCRATWASGDLDHGADAGELR 94
PKAPEVTFARRALRACAGGAG AG+AGGVCEAGADWGAQTCRATWASGDLDHGADAGELR
Sbjct: 21 PKAPEVTFARRALRACAGGAGGAGQAGGVCEAGADWGAQTCRATWASGDLDHGADAGELR 80
Query: 95 LGRQRTRGRVRGLSVQRARCRHLQRPAVPRRPDLDHFLAASLSGGSPRSGSHFPVQDAGS 154
LGRQRTRGRVRGLSVQRARCRHLQRPAVPRRPDLDHFLAASLSGGSPRSGSHFPVQDAGS
Sbjct: 81 LGRQRTRGRVRGLSVQRARCRHLQRPAVPRRPDLDHFLAASLSGGSPRSGSHFPVQDAGS 140
Query: 155 EATSVVARDPSQDLPGTRRDGTLGPRPQPPAAAGAPGFDPASPWGDRSVPELGGDLKPMV 214
EATSVVARDPSQDLPGTRRDGTLGPRPQPPAAAGAPGFDPASPWGDRSVPELGGDLKPMV
Sbjct: 141 EATSVVARDPSQDLPGTRRDGTLGPRPQPPAAAGAPGFDPASPWGDRSVPELGGDLKPMV 200
Query: 215 LTSTPWLRARLRGRG 229
LTSTPWLRARLRGRG
Sbjct: 201 LTSTPWLRARLRGRG 215
>gi|153070256 MAGI family member, X-linked isoform d [Homo sapiens]
Length = 253
Score = 40.0 bits (92), Expect = 0.002
Identities = 42/155 (27%), Positives = 59/155 (38%), Gaps = 13/155 (8%)
Query: 84 LDHGADAGEL--RLGRQRTRGRVRGLSVQRARCRHLQRPAVPRRPDLDHFLAASLSGGSP 141
+DH G+L + + T+G +V+R R Q V RRP L+ G P
Sbjct: 88 VDHRPQVGDLVLHINGESTQGLTHAQAVERIRAGGPQLHLVIRRP-LETHPGKPRGVGEP 146
Query: 142 RSGSHFPVQDAGSE-------ATSVVARDPSQDLPGTRRDGTLGPRPQPPAAAGAPGFDP 194
R G G E +TS+V PS+ T + P P P AAA P P
Sbjct: 147 RKGVDRSPDPGGPEVTGSRSSSTSLVQHPPSRT---TLKKTRGSPEPSPEAAADGPTVSP 203
Query: 195 ASPWGDRSVPELGGDLKPMVLTSTPWLRARLRGRG 229
+ ++ G P ++ S L L RG
Sbjct: 204 PERRAEDPNDQIPGSPGPWLVPSEERLSRALGVRG 238
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 39.7 bits (91), Expect = 0.002
Identities = 44/175 (25%), Positives = 60/175 (34%), Gaps = 10/175 (5%)
Query: 16 RQSGDRSTREAGMKEPPLQPKAPEVTFARRALRACAGGAGRAGKAGGVCEAGADWGAQTC 75
++SG R PP +P +P +A A R ++ A + G
Sbjct: 319 QRSGAHGGRPGSAHSPPDKPSSPSPRVRDKAAAAAPTPPARGKESPSPRSAPSSQG---- 374
Query: 76 RATWASGDLDHGADAGELRLGRQRTRGRVRGLSVQRARCRHLQRPAVPRRPDLDHFLAAS 135
R A+G AG R R+R R S R R R RPA PR A S
Sbjct: 375 RGGRAAGG------AGRRRRRRRRRRRSRSSASAPRRRGRRRPRPAPPRGSSRSLSRARS 428
Query: 136 LSGGSPRSGSHFPVQDAGSEATSVVARDPSQDLPGTRRDGTLGPRPQPPAAAGAP 190
S G+ P + GSE +++ P R + P P G P
Sbjct: 429 SSDSGSGRGAPGPGPEPGSERGHGGHGKRAKERPPRARPASTSPSPGAHGRRGGP 483
>gi|153070252 MAGI family member, X-linked isoform c [Homo sapiens]
Length = 258
Score = 38.1 bits (87), Expect = 0.006
Identities = 44/160 (27%), Positives = 62/160 (38%), Gaps = 18/160 (11%)
Query: 84 LDHGADAGEL--RLGRQRTRGRVRGLSVQRARCRHLQRPAVPRRPDLDHFLAASLSGGSP 141
+DH G+L + + T+G +V+R R Q V RRP L+ G P
Sbjct: 88 VDHRPQVGDLVLHINGESTQGLTHAQAVERIRAGGPQLHLVIRRP-LETHPGKPRGVGEP 146
Query: 142 RSG--------SHFP----VQDAGSEATSVVARDPSQDLPGTRRDGTLGPRPQPPAAAGA 189
R G S P V + S +TS+V PS+ T + P P P AAA
Sbjct: 147 RKGVVPSWPDRSPDPGGPEVTGSRSSSTSLVQHPPSRT---TLKKTRGSPEPSPEAAADG 203
Query: 190 PGFDPASPWGDRSVPELGGDLKPMVLTSTPWLRARLRGRG 229
P P + ++ G P ++ S L L RG
Sbjct: 204 PTVSPPERRAEDPNDQIPGSPGPWLVPSEERLSRALGVRG 243
>gi|153791497 ciliary rootlet coiled-coil [Homo sapiens]
Length = 2017
Score = 37.4 bits (85), Expect = 0.011
Identities = 34/119 (28%), Positives = 49/119 (41%), Gaps = 12/119 (10%)
Query: 88 ADAGELRLGRQRTRGRVRGLSVQRARCRHLQRPAVPRRPDLDHFLAASLSGG-----SPR 142
A+A EL L GR +GL + AR +R A + L L L G +PR
Sbjct: 1396 AEAAELGLRLSAAEGRAQGLEAELARVEVQRRAAEAQLGGLRSALRRGLGLGRAPSPAPR 1455
Query: 143 SGSHFPVQDAGSEATSVVARDPS--QDLPGTRRDGTLGPRPQPPAAAGAPGFDPASPWG 199
P +DA +E + PS + PG++ P P P + +P DP + G
Sbjct: 1456 PVPGSPARDAPAEGSGEGLNSPSTLECSPGSQ-----PPSPGPATSPASPDLDPEAVRG 1509
>gi|92091575 coiled-coil domain containing 57 [Homo sapiens]
Length = 915
Score = 37.4 bits (85), Expect = 0.011
Identities = 39/164 (23%), Positives = 60/164 (36%), Gaps = 21/164 (12%)
Query: 32 PLQPKAP--EVTFARRALRACAGGAGRAGKAGGVCEAGADWGAQTCRATWASGDLDHGAD 89
PL+ +P E + R GG+ +AG+AGG +AG A G + G
Sbjct: 606 PLKMSSPHAESQPSVRTSTETTGGSAQAGQAGGSVQAGQ-----------AGGSVQAGPV 654
Query: 90 AGELRLGRQRTRGRVRGLSVQRARCRHLQRP--------AVPRRPDLDHFLAASLSGGSP 141
+ L L + R ++ L V R R + L+ P +PR D H L
Sbjct: 655 SSGLALRKLGDRVQLLNLLVTRLRQKVLREPLEPAALQRELPREVDQVHLEVLELRKQVA 714
Query: 142 RSGSHFPVQDAGSEATSVVARDPSQDLPGTRRDGTLGPRPQPPA 185
G H + G S + P+ D R+ + P+
Sbjct: 715 ELGKHLRIAQHGGAEPSGRKQPPASDAVALGREDAKSAEDEAPS 758
>gi|153070254 MAGI family member, X-linked isoform b [Homo sapiens]
Length = 262
Score = 37.4 bits (85), Expect = 0.011
Identities = 39/144 (27%), Positives = 54/144 (37%), Gaps = 11/144 (7%)
Query: 93 LRLGRQRTRGRVRGLSVQRARCRHLQRPAVPRRPDLDHFLAASLSGGSPRSGSHFPVQDA 152
L + + T+G +V+R R Q V RRP L+ G PR G
Sbjct: 108 LHINGESTQGLTHAQAVERIRAGGPQLHLVIRRP-LETHPGKPRGVGEPRKGVDRSPDPG 166
Query: 153 GSE-------ATSVVARDPSQDLPGTRRDGTLGPRPQPPAAAGAPGFDPASPWGDRSVPE 205
G E +TS+V PS+ T + P P P AAA P P + +
Sbjct: 167 GPEVTGSRSSSTSLVQHPPSRT---TLKKTRGSPEPSPEAAADGPTVSPPERRAEDPNDQ 223
Query: 206 LGGDLKPMVLTSTPWLRARLRGRG 229
+ G P ++ S L L RG
Sbjct: 224 IPGSPGPWLVPSEERLSRALGVRG 247
>gi|239753839 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 37.0 bits (84), Expect = 0.014
Identities = 49/161 (30%), Positives = 57/161 (35%), Gaps = 35/161 (21%)
Query: 48 RACAGGAGRAGKAGGVCEAGADWGAQTCRATWASGDLDHGADAGELRLGRQRTRGRVRGL 107
RA RAG AG C A A R + A G G+ AG R G
Sbjct: 89 RASRAAGRRAGPAGPPCRAPGRGRAAATRRSPAPGTA-RGSPAGVERAGGATAASSAGTR 147
Query: 108 SVQRARC-------------RHLQRP---AVPRRPDLDHFLAASLSGGSPRSGSH--FPV 149
SV R R L+RP A+PR P AA G+PR G+ +PV
Sbjct: 148 SVPARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPV 207
Query: 150 QDAGSEATSVVARDPSQDLPGTRRDGTLGPRPQPPAAAGAP 190
A VA P+ P PPA AGAP
Sbjct: 208 GFA-------VAAPPA---------AAASVAPPPPAVAGAP 232
>gi|111120318 NK6 transcription factor related, locus 1 [Homo
sapiens]
Length = 367
Score = 36.6 bits (83), Expect = 0.018
Identities = 30/97 (30%), Positives = 40/97 (41%), Gaps = 5/97 (5%)
Query: 134 ASLSGGSPRSGSHFPVQDAGSEATSVVARDPSQDLPGTRRDGTLGPRPQPPAAAGAPGFD 193
+S S S S S A + A + A P+ L G R +L P P PP +P
Sbjct: 123 SSSSSSSSASASSASAAAAAAAAAAAAASSPAGLLAGLPRFSSLSPPPPPPGLYFSPSAA 182
Query: 194 PASPWG--DRSVPELGGDLK---PMVLTSTPWLRARL 225
+ G + + EL G P V+ S PW ARL
Sbjct: 183 AVAAVGRYPKPLAELPGRTPIFWPGVMQSPPWRDARL 219
>gi|122937321 UNC homeobox [Homo sapiens]
Length = 531
Score = 36.6 bits (83), Expect = 0.018
Identities = 37/108 (34%), Positives = 42/108 (38%), Gaps = 15/108 (13%)
Query: 120 PAVPRRPDLD-HFLAASLSGGSPRSGSHFPVQDA-GSEATSVVARDPSQDLPGTRRD--- 174
PAVP P F A S GG+P S DA S A P +DL
Sbjct: 413 PAVPPAPPAQASFGAFSGPGGAPDSAFARRSPDAVASPGAPAPAPAPFRDLASAAATEGG 472
Query: 175 -------GTLGPRPQPPAAAGAPGFDPASPWGDRS---VPELGGDLKP 212
GT GP P PPA + PG P SP + + VPE G P
Sbjct: 473 GGDCADAGTAGPAPPPPAPSPRPGPRPPSPAEEPATCGVPEPGAAAGP 520
>gi|169168886 PREDICTED: hypothetical protein [Homo sapiens]
Length = 278
Score = 36.2 bits (82), Expect = 0.024
Identities = 51/160 (31%), Positives = 63/160 (39%), Gaps = 37/160 (23%)
Query: 44 RRALRACAGGAGRAG---KAGGVCEAGADW--GAQTCRATWASGDLDH--GADAGELRLG 96
R ++RA + +GR G +A G GA GA A +L GADA
Sbjct: 87 RNSVRAVSFSSGRVGVREEAAGHLAVGAAGLTGAHADLAVGRGAELAQLLGADAAAAAAV 146
Query: 97 RQRTRGRVRGLSVQRARCRHLQRPAVPRRPDLDHFLAASLSGGSPRSGSHFPVQDAGSEA 156
+ R RA R L R P RP AA L+ G + G + G+ A
Sbjct: 147 QHEAHAR-------RAARRRLVR--APARP------AAVLADGRLQGGQGGQRRSVGAHA 191
Query: 157 TSVVARDPSQDLPGTRRDGTLGPRPQPPAAAGAPGFDPAS 196
LPG R P QPPAAAGAPG PA+
Sbjct: 192 -----------LPGRPRV----PPWQPPAAAGAPGAYPAA 216
>gi|239742988 PREDICTED: hypothetical protein [Homo sapiens]
Length = 470
Score = 36.2 bits (82), Expect = 0.024
Identities = 51/156 (32%), Positives = 62/156 (39%), Gaps = 35/156 (22%)
Query: 44 RRALRACAGGAGRAG---KAGGVCEAGADWGAQTCRATWASGDLDHGADAGELRLGRQRT 100
R ++RA + +GR G +A G GA G A A L GADA +
Sbjct: 285 RNSVRAVSFSSGRVGVREEAAGHLAVGAA-GLTGAHADLALAQL-LGADAAAAAAVQHEA 342
Query: 101 RGRVRGLSVQRARCRHLQRPAVPRRPDLDHFLAASLSGGSPRSGSHFPVQDAGSEATSVV 160
R RA R L R P RP AA L+ G + G + G+ A
Sbjct: 343 HAR-------RAARRRLVR--APARP------AAVLADGRLQGGQGGQRRSVGAHA---- 383
Query: 161 ARDPSQDLPGTRRDGTLGPRPQPPAAAGAPGFDPAS 196
LPG R P QPPAAAGAPG PA+
Sbjct: 384 -------LPGRPRV----PPWQPPAAAGAPGAYPAA 408
>gi|39812378 RAN binding protein 9 [Homo sapiens]
Length = 729
Score = 35.8 bits (81), Expect = 0.031
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Query: 133 AASLSGGSPRSGSHFPVQDAGSEATSVVARDPSQDLPGTRRDGTLGPRPQPPAAAGAPGF 192
A S GSP G+ + G+ A +++ P P T P P PPA+A AP
Sbjct: 43 AGSSPAGSPGGGAGG--EGLGAAAAALLLHPPPPPPPATAAPPPPPPPPPPPASAAAPAS 100
Query: 193 DPASPWGDRSVPELGG 208
P +P G + P G
Sbjct: 101 GPPAPPGLAAGPGPAG 116
>gi|122692281 hypothetical protein LOC645369 [Homo sapiens]
Length = 621
Score = 35.8 bits (81), Expect = 0.031
Identities = 57/197 (28%), Positives = 73/197 (37%), Gaps = 23/197 (11%)
Query: 40 VTFARRALRACAGGAGRAGKAGGVCEAGADWGAQTCRATWASGDLDHGADAGELRLGRQR 99
V +RRA A A A + + C WG Q+ AS +D A L
Sbjct: 332 VAGSRRAAAATAAAAASSCSSPAPCSPPESWGRQST----ASSFVDSSLSAFAL---LPL 384
Query: 100 TRGRVRGLSVQRARCRHLQRPAVPR------RPDLDHFLAASLSG--GSPRSGSHFPVQD 151
GR RG + A C QRP R R +LD +L G GS R P +
Sbjct: 385 QGGRDRGGDAEGASC-SWQRPPGERGSQEIPRGELD-LSMTNLRGAEGSMRGARREPEEP 442
Query: 152 AGSEATSVVARDPSQDLPGTRRDGTLGPRPQPPAAAGAPGF-DPASPWGDRSVPELGGDL 210
G+ A AR LP T R L R + +G P + P SP S D
Sbjct: 443 EGAVAAR-AARGQGGRLPRTGRYAALRRR----STSGLPDYRAPPSPEPPPSPGSADPDS 497
Query: 211 KPMVLTSTPWLRARLRG 227
P+ ++P RL G
Sbjct: 498 SPLAKAASPSPPLRLEG 514
>gi|153070258 MAGI family member, X-linked isoform a [Homo sapiens]
Length = 334
Score = 35.4 bits (80), Expect = 0.041
Identities = 41/149 (27%), Positives = 57/149 (38%), Gaps = 16/149 (10%)
Query: 93 LRLGRQRTRGRVRGLSVQRARCRHLQRPAVPRRPDLDHFLAASLSGGSPRSG-------- 144
L + + T+G +V+R R Q V RRP L+ G PR G
Sbjct: 175 LHINGESTQGLTHAQAVERIRAGGPQLHLVIRRP-LETHPGKPRGVGEPRKGVVPSWPDR 233
Query: 145 SHFP----VQDAGSEATSVVARDPSQDLPGTRRDGTLGPRPQPPAAAGAPGFDPASPWGD 200
S P V + S +TS+V PS+ T + P P P AAA P P +
Sbjct: 234 SPDPGGPEVTGSRSSSTSLVQHPPSRT---TLKKTRGSPEPSPEAAADGPTVSPPERRAE 290
Query: 201 RSVPELGGDLKPMVLTSTPWLRARLRGRG 229
++ G P ++ S L L RG
Sbjct: 291 DPNDQIPGSPGPWLVPSEERLSRALGVRG 319
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 35.0 bits (79), Expect = 0.053
Identities = 52/188 (27%), Positives = 62/188 (32%), Gaps = 12/188 (6%)
Query: 35 PKAPEVTFARRALRACAGGAGRAGKAGGVCEAGADWGAQTCRATWASGDLDHGADAGELR 94
P P + + G G AG+ G V G A + A G G
Sbjct: 894 PPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQG 953
Query: 95 LGRQRTRGRVRGLSVQRARCRHLQRPAVPRRPDLDHFLAASLSGGSPRS----GSHFPVQ 150
+ QR V GL QR P P AS G P G P
Sbjct: 954 IAGQRG---VVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPG 1010
Query: 151 DAGSEATSVVARDPSQD-LPGTRRD-GTLGPRPQP--PAAAGAPG-FDPASPWGDRSVPE 205
++G E P +D PG + D G GP P P A GAPG PA GDR
Sbjct: 1011 ESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETG 1070
Query: 206 LGGDLKPM 213
G P+
Sbjct: 1071 PAGPAGPV 1078
>gi|239749077 PREDICTED: hypothetical protein XP_002346898 [Homo
sapiens]
Length = 334
Score = 35.0 bits (79), Expect = 0.053
Identities = 61/209 (29%), Positives = 75/209 (35%), Gaps = 28/209 (13%)
Query: 3 ITGCLGRGGQNVSRQSGDRSTREAGMKEPPLQP---KAPEVTFARR--ALRACAGGAGRA 57
+ G G G + G R G++ P L P P + R + RACA G+A
Sbjct: 138 LRGRRGAAGLVSAGHLGREPPRGGGLRPPALVPVPLATPLLLEGRSEPSTRACAVSGGQA 197
Query: 58 GKAGGVCEAGADWGAQTC-RATWASGDLDHGADAGELRLGRQRTRGRVRGLSVQRAR--- 113
G D A+ RA A GA+AG GR G R VQ R
Sbjct: 198 ALLGAHVRPAPDRAARCAPRAKKA------GANAGARGQGRGAAAGPERPPHVQGRRPAP 251
Query: 114 -----CRHLQRPAVPRRPDLDHFLAASLSG--GSPRSGSHFPVQDAGSEATSVVARDPSQ 166
R AV + L G G P +G+ +Q G AT V R P
Sbjct: 252 RGAVGARRALLGAVGKAGGLTRARETRRRGEEGVPAAGTPRCLQQEG--ATQVAVRLPLV 309
Query: 167 DLPGTRRDGTLGPRPQPPAAAGAPGFDPA 195
+ R DG P P AA GAPG A
Sbjct: 310 SVL-VRHDG---PLPLSAAALGAPGLRTA 334
Score = 29.3 bits (64), Expect = 2.9
Identities = 51/186 (27%), Positives = 64/186 (34%), Gaps = 56/186 (30%)
Query: 64 CEAGADWGAQTCRATWASGD-------LDHGADA-GELRLGRQR-------TRGRVRGLS 108
C G+D TCR + GD GA A GE G+ +RGR
Sbjct: 13 CLRGSDTAGVTCRVSSQDGDRRGLGREAAPGAPAEGEKEKGKNSRRPRPTCSRGRTERGR 72
Query: 109 VQRARCRHLQRPAVPRRPDLDHFLAASLSGGSPRSGSHFPVQDAGSEATSVV-------- 160
V+R H +RPA G+P +H PV A + + V
Sbjct: 73 VERG-ADHQERPA-----------------GAP---AHRPVPAAAAILRAAVHRVLRVLR 111
Query: 161 ----ARDPSQDLPGTRRDGT---LGPRPQPPAAAGAPGFDPASPWGDRSVPELGGDLKPM 213
RD + G RR+G PR Q GA G A G P GG L+P
Sbjct: 112 AAAAVRDAER---GLRREGPRRHAPPRKQLRGRRGAAGLVSAGHLGRE--PPRGGGLRPP 166
Query: 214 VLTSTP 219
L P
Sbjct: 167 ALVPVP 172
>gi|239743103 PREDICTED: hypothetical protein XP_002342755 [Homo
sapiens]
Length = 329
Score = 35.0 bits (79), Expect = 0.053
Identities = 61/209 (29%), Positives = 75/209 (35%), Gaps = 28/209 (13%)
Query: 3 ITGCLGRGGQNVSRQSGDRSTREAGMKEPPLQP---KAPEVTFARR--ALRACAGGAGRA 57
+ G G G + G R G++ P L P P + R + RACA G+A
Sbjct: 133 LRGRRGAAGLVSAGHLGREPPRGGGLRPPALVPVPLATPLLLEGRSEPSTRACAVSGGQA 192
Query: 58 GKAGGVCEAGADWGAQTC-RATWASGDLDHGADAGELRLGRQRTRGRVRGLSVQRAR--- 113
G D A+ RA A GA+AG GR G R VQ R
Sbjct: 193 ALLGAHVRPAPDRAARCAPRAKKA------GANAGARGQGRGAAAGPERPPHVQGRRPAP 246
Query: 114 -----CRHLQRPAVPRRPDLDHFLAASLSG--GSPRSGSHFPVQDAGSEATSVVARDPSQ 166
R AV + L G G P +G+ +Q G AT V R P
Sbjct: 247 RGAVGARRALLGAVGKAGGLTRARETRRRGEEGVPAAGTPRCLQQEG--ATQVAVRLPLV 304
Query: 167 DLPGTRRDGTLGPRPQPPAAAGAPGFDPA 195
+ R DG P P AA GAPG A
Sbjct: 305 SVL-VRHDG---PLPLSAAALGAPGLRTA 329
Score = 29.3 bits (64), Expect = 2.9
Identities = 51/186 (27%), Positives = 64/186 (34%), Gaps = 56/186 (30%)
Query: 64 CEAGADWGAQTCRATWASGD-------LDHGADA-GELRLGRQR-------TRGRVRGLS 108
C G+D TCR + GD GA A GE G+ +RGR
Sbjct: 8 CLRGSDTAGVTCRVSSQDGDRRGLGREAAPGAPAEGEKEKGKNSRRPRPTCSRGRTERGR 67
Query: 109 VQRARCRHLQRPAVPRRPDLDHFLAASLSGGSPRSGSHFPVQDAGSEATSVV-------- 160
V+R H +RPA G+P +H PV A + + V
Sbjct: 68 VERG-ADHQERPA-----------------GAP---AHRPVPAAAAILRAAVHRVLRVLR 106
Query: 161 ----ARDPSQDLPGTRRDGT---LGPRPQPPAAAGAPGFDPASPWGDRSVPELGGDLKPM 213
RD + G RR+G PR Q GA G A G P GG L+P
Sbjct: 107 AAAAVRDAER---GLRREGPRRHAPPRKQLRGRRGAAGLVSAGHLGRE--PPRGGGLRPP 161
Query: 214 VLTSTP 219
L P
Sbjct: 162 ALVPVP 167
>gi|239508758 PREDICTED: hypothetical protein [Homo sapiens]
Length = 329
Score = 35.0 bits (79), Expect = 0.053
Identities = 61/209 (29%), Positives = 75/209 (35%), Gaps = 28/209 (13%)
Query: 3 ITGCLGRGGQNVSRQSGDRSTREAGMKEPPLQP---KAPEVTFARR--ALRACAGGAGRA 57
+ G G G + G R G++ P L P P + R + RACA G+A
Sbjct: 133 LRGRRGAAGLVSAGHLGREPPRGGGLRPPALVPVPLATPLLLEGRSEPSTRACAVSGGQA 192
Query: 58 GKAGGVCEAGADWGAQTC-RATWASGDLDHGADAGELRLGRQRTRGRVRGLSVQRAR--- 113
G D A+ RA A GA+AG GR G R VQ R
Sbjct: 193 ALLGAHVRPAPDRAARCAPRAKKA------GANAGARGQGRGAAAGPERPPHVQGRRPAP 246
Query: 114 -----CRHLQRPAVPRRPDLDHFLAASLSG--GSPRSGSHFPVQDAGSEATSVVARDPSQ 166
R AV + L G G P +G+ +Q G AT V R P
Sbjct: 247 RGAVGARRALLGAVGKAGGLTRARETRRRGEEGVPAAGTPRCLQQEG--ATQVAVRLPLV 304
Query: 167 DLPGTRRDGTLGPRPQPPAAAGAPGFDPA 195
+ R DG P P AA GAPG A
Sbjct: 305 SVL-VRHDG---PLPLSAAALGAPGLRTA 329
Score = 29.3 bits (64), Expect = 2.9
Identities = 51/186 (27%), Positives = 64/186 (34%), Gaps = 56/186 (30%)
Query: 64 CEAGADWGAQTCRATWASGD-------LDHGADA-GELRLGRQR-------TRGRVRGLS 108
C G+D TCR + GD GA A GE G+ +RGR
Sbjct: 8 CLRGSDTAGVTCRVSSQDGDRRGLGREAAPGAPAEGEKEKGKNSRRPRPTCSRGRTERGR 67
Query: 109 VQRARCRHLQRPAVPRRPDLDHFLAASLSGGSPRSGSHFPVQDAGSEATSVV-------- 160
V+R H +RPA G+P +H PV A + + V
Sbjct: 68 VERG-ADHQERPA-----------------GAP---AHRPVPAAAAILRAAVHRVLRVLR 106
Query: 161 ----ARDPSQDLPGTRRDGT---LGPRPQPPAAAGAPGFDPASPWGDRSVPELGGDLKPM 213
RD + G RR+G PR Q GA G A G P GG L+P
Sbjct: 107 AAAAVRDAER---GLRREGPRRHAPPRKQLRGRRGAAGLVSAGHLGRE--PPRGGGLRPP 161
Query: 214 VLTSTP 219
L P
Sbjct: 162 ALVPVP 167
>gi|56549696 E1A binding protein p400 [Homo sapiens]
Length = 3122
Score = 35.0 bits (79), Expect = 0.053
Identities = 26/74 (35%), Positives = 30/74 (40%), Gaps = 16/74 (21%)
Query: 140 SPRSGSHFPVQDAGS--------------EATSVVARDPSQDLPGTRRDGTLGPR-PQPP 184
SP SG HF QD T + R+ P T+ GT+ PQ P
Sbjct: 183 SPSSGGHFVFQDGSGLTQIAQGAQVQLQHPGTPITVRERRPSQPHTQSGGTIHHLGPQSP 242
Query: 185 AAAGAPGFDP-ASP 197
AAAG G P ASP
Sbjct: 243 AAAGGAGLQPLASP 256
>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
Length = 2285
Score = 34.7 bits (78), Expect = 0.070
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 163 DPSQDLPGTRRDGTLGPRPQPPAAAGAPGFD-PASPWGDRSVPELGGDLKPMVLTSTP 219
DP D+ P+ QPP+ AG+ P +P S GGDLKP STP
Sbjct: 1112 DPPPDIFAAADSKKSQPKIQPPSPAGSGSMQGPQTPQSTSSSMAEGGDLKPPTPASTP 1169
>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
Length = 2068
Score = 34.7 bits (78), Expect = 0.070
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 163 DPSQDLPGTRRDGTLGPRPQPPAAAGAPGFD-PASPWGDRSVPELGGDLKPMVLTSTP 219
DP D+ P+ QPP+ AG+ P +P S GGDLKP STP
Sbjct: 1112 DPPPDIFAAADSKKSQPKIQPPSPAGSGSMQGPQTPQSTSSSMAEGGDLKPPTPASTP 1169
>gi|162951873 ventral anterior homeobox 1 isoform a [Homo sapiens]
Length = 334
Score = 34.7 bits (78), Expect = 0.070
Identities = 28/87 (32%), Positives = 34/87 (39%), Gaps = 8/87 (9%)
Query: 115 RHLQRPAVPRRPDLDHFLAASLSG--GSPRSGSHFPVQDAGSEATSVVARDPSQDLPGTR 172
R L++ + P L L +G GS G P AG+ A S A + P
Sbjct: 180 RLLEQGRLLSPPGLPALLPPCATGALGSALRGPSLPALGAGAAAGSAAAAAAAAPGPAGA 239
Query: 173 RDGTLGPRPQPPAAAGAPGFDPASPWG 199
P PPA GAPG PA P G
Sbjct: 240 AS------PHPPAVGGAPGPGPAGPGG 260
>gi|38202246 syntaphilin [Homo sapiens]
Length = 494
Score = 34.7 bits (78), Expect = 0.070
Identities = 32/101 (31%), Positives = 39/101 (38%), Gaps = 15/101 (14%)
Query: 102 GRVRGLSVQRARCRHLQRPAVPRRPDLDHFLA----ASLSGGSPRSGSHFPVQDAGSEAT 157
G G+ + R +Q V +PDLD L A + G P SG P DA
Sbjct: 299 GMEAGVQASCMQERAIQTDFVQYQPDLDTILEKVTQAQVCGTDPESGDRCPELDAHPSGP 358
Query: 158 SVVARDPSQDLPGTRRDG-------TLGPRPQPPAAAGAPG 191
RDP+ + T D T GP PQ P A PG
Sbjct: 359 ----RDPNSAVVVTVGDELEAPEPITRGPTPQRPGANPNPG 395
>gi|151301154 mucin 6, gastric [Homo sapiens]
Length = 2439
Score = 34.3 bits (77), Expect = 0.091
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 152 AGSEATSVVARDPSQDLPGTRRDGTLGPRPQPPAAAGAPGFDPASP 197
A S + + + +Q+LPGT T GPRP P + G P P
Sbjct: 1335 ATSGTSPTLPKSTNQELPGTTATQTTGPRPTPASTTGPTTPQPGQP 1380
>gi|239744249 PREDICTED: similar to double homeobox, 4 [Homo
sapiens]
Length = 483
Score = 33.9 bits (76), Expect = 0.12
Identities = 53/191 (27%), Positives = 64/191 (33%), Gaps = 26/191 (13%)
Query: 24 REAGMKEPPLQPKAPEVTFARRALRACAGGAGRAGKAGGVCEA-------GADWGAQTCR 76
RE G+ E +Q + F R R G +AGG+C A W A
Sbjct: 190 RETGLPESRIQ-----IWFQNRRARHPGQGGRAPAQAGGLCSAAPGGGHPAPSWVAFAHT 244
Query: 77 ATWASG-DLDHGADA-GELRLG---RQRTRGRVRGLSVQRARCRHLQRPAVPRRPDLDHF 131
W +G H A G L G Q R Q A + +PA P R D +
Sbjct: 245 GAWGTGLPAPHVPCAPGALPQGAFVSQAARAAPALQPSQAAPAEGISQPA-PARGDFAYA 303
Query: 132 LAASLSGG-SPRSGSHFPVQDAGSEATSVVARDPSQD-LPGTRRDGTLGPRPQPPAAAG- 188
A G S +P S RDP +D LPG GP P G
Sbjct: 304 APAPPDGALSHPQAPRWPPHPGKSRED----RDPQRDGLPGPCAVAQPGPAQAGPQGQGV 359
Query: 189 -APGFDPASPW 198
AP SPW
Sbjct: 360 LAPPTSQGSPW 370
>gi|239744248 PREDICTED: similar to double homeobox, 4 [Homo
sapiens]
Length = 483
Score = 33.9 bits (76), Expect = 0.12
Identities = 53/191 (27%), Positives = 64/191 (33%), Gaps = 26/191 (13%)
Query: 24 REAGMKEPPLQPKAPEVTFARRALRACAGGAGRAGKAGGVCEA-------GADWGAQTCR 76
RE G+ E +Q + F R R G +AGG+C A W A
Sbjct: 190 RETGLPESRIQ-----IWFQNRRARHPGQGGRAPAQAGGLCSAAPGGGHPAPSWVAFAHT 244
Query: 77 ATWASG-DLDHGADA-GELRLG---RQRTRGRVRGLSVQRARCRHLQRPAVPRRPDLDHF 131
W +G H A G L G Q R Q A + +PA P R D +
Sbjct: 245 GAWGTGLPAPHVPCAPGALPQGAFVSQAARAAPALQPSQAAPAEGISQPA-PARGDFAYA 303
Query: 132 LAASLSGG-SPRSGSHFPVQDAGSEATSVVARDPSQD-LPGTRRDGTLGPRPQPPAAAG- 188
A G S +P S RDP +D LPG GP P G
Sbjct: 304 APAPPDGALSHPQAPRWPPHPGKSRED----RDPQRDGLPGPCAVAQPGPAQAGPQGQGV 359
Query: 189 -APGFDPASPW 198
AP SPW
Sbjct: 360 LAPPTSQGSPW 370
>gi|239744246 PREDICTED: hypothetical protein XP_002343082 [Homo
sapiens]
Length = 483
Score = 33.9 bits (76), Expect = 0.12
Identities = 53/191 (27%), Positives = 64/191 (33%), Gaps = 26/191 (13%)
Query: 24 REAGMKEPPLQPKAPEVTFARRALRACAGGAGRAGKAGGVCEA-------GADWGAQTCR 76
RE G+ E +Q + F R R G +AGG+C A W A
Sbjct: 190 RETGLPESRIQ-----IWFQNRRARHPGQGGRAPAQAGGLCNAAPGGGHPAPSWVAFAHT 244
Query: 77 ATWASG-DLDHGADA-GELRLG---RQRTRGRVRGLSVQRARCRHLQRPAVPRRPDLDHF 131
W +G H A G L G Q R Q A + +PA P R D +
Sbjct: 245 GAWGTGLPAPHVPCAPGALPQGAFVSQAARAAPALQPSQAAPAEGISQPA-PARGDFAYA 303
Query: 132 LAASLSGG-SPRSGSHFPVQDAGSEATSVVARDPSQD-LPGTRRDGTLGPRPQPPAAAG- 188
A G S +P S RDP +D LPG GP P G
Sbjct: 304 APAPPDGALSHPQAPRWPPHPGKSRED----RDPQRDGLPGPCAVAQPGPAQAGPQGQGV 359
Query: 189 -APGFDPASPW 198
AP SPW
Sbjct: 360 LAPPTSQGSPW 370
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.135 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,938,229
Number of Sequences: 37866
Number of extensions: 616025
Number of successful extensions: 4263
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 212
Number of HSP's that attempted gapping in prelim test: 4002
Number of HSP's gapped (non-prelim): 470
length of query: 229
length of database: 18,247,518
effective HSP length: 99
effective length of query: 130
effective length of database: 14,498,784
effective search space: 1884841920
effective search space used: 1884841920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.