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Search of human proteins with 239754399
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239754399 PREDICTED: hypothetical protein [Homo sapiens]
(414 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754399 PREDICTED: hypothetical protein [Homo sapiens] 837 0.0
gi|239748964 PREDICTED: hypothetical protein XP_002346869 [Homo ... 837 0.0
gi|239742984 PREDICTED: hypothetical protein XP_002342711 [Homo ... 837 0.0
gi|122937321 UNC homeobox [Homo sapiens] 49 1e-05
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 46 7e-05
gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo ... 45 2e-04
gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo ... 45 2e-04
gi|169207312 PREDICTED: hypothetical protein [Homo sapiens] 44 4e-04
gi|239750650 PREDICTED: hypothetical protein [Homo sapiens] 44 4e-04
gi|89037350 PREDICTED: hypothetical protein [Homo sapiens] 44 4e-04
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 44 4e-04
gi|239749709 PREDICTED: hypothetical protein [Homo sapiens] 42 0.001
gi|239753839 PREDICTED: hypothetical protein [Homo sapiens] 41 0.002
gi|239750710 PREDICTED: hypothetical protein [Homo sapiens] 41 0.002
gi|239745016 PREDICTED: hypothetical protein XP_002343331 [Homo ... 41 0.002
gi|157785645 SPEG complex locus [Homo sapiens] 40 0.005
gi|153792074 proline rich 12 [Homo sapiens] 40 0.005
gi|239756433 PREDICTED: hypothetical protein [Homo sapiens] 39 0.007
gi|239750970 PREDICTED: hypothetical protein XP_002347634 [Homo ... 39 0.007
gi|239745376 PREDICTED: hypothetical protein XP_002343484 [Homo ... 39 0.007
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 39 0.009
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 39 0.009
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 39 0.009
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens] 39 0.009
gi|82546845 breakpoint cluster region isoform 2 [Homo sapiens] 39 0.011
gi|82546843 breakpoint cluster region isoform 1 [Homo sapiens] 39 0.011
gi|239748337 PREDICTED: hypothetical protein XP_002346632 [Homo ... 39 0.011
gi|4502523 calcium channel, voltage-dependent, N type, alpha 1B ... 39 0.011
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 39 0.011
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] 38 0.015
>gi|239754399 PREDICTED: hypothetical protein [Homo sapiens]
Length = 414
Score = 837 bits (2162), Expect = 0.0
Identities = 414/414 (100%), Positives = 414/414 (100%)
Query: 1 MTMPWVFAIQQNIFSYFHFHLPISEKSSIMDTKIKLDLPLAVQTRKLTLPALMRPRTVLN 60
MTMPWVFAIQQNIFSYFHFHLPISEKSSIMDTKIKLDLPLAVQTRKLTLPALMRPRTVLN
Sbjct: 1 MTMPWVFAIQQNIFSYFHFHLPISEKSSIMDTKIKLDLPLAVQTRKLTLPALMRPRTVLN 60
Query: 61 DVGKHSPDLLRREGSVCVIDGEWNGRQQQNNSSKSYRPQAQTLKTKAAWKQGLHNNVRNC 120
DVGKHSPDLLRREGSVCVIDGEWNGRQQQNNSSKSYRPQAQTLKTKAAWKQGLHNNVRNC
Sbjct: 61 DVGKHSPDLLRREGSVCVIDGEWNGRQQQNNSSKSYRPQAQTLKTKAAWKQGLHNNVRNC 120
Query: 121 QVQSKLFASCGFSQERGCRFSRLLHHPLATTASPSAPRTPAADALASQAKLGRTGLGPIP 180
QVQSKLFASCGFSQERGCRFSRLLHHPLATTASPSAPRTPAADALASQAKLGRTGLGPIP
Sbjct: 121 QVQSKLFASCGFSQERGCRFSRLLHHPLATTASPSAPRTPAADALASQAKLGRTGLGPIP 180
Query: 181 GEAKERGARAPQKQAAPPPQSYPCRVWEKFQAALQRAAGGIAAKSTTEERAGPRGVRTVR 240
GEAKERGARAPQKQAAPPPQSYPCRVWEKFQAALQRAAGGIAAKSTTEERAGPRGVRTVR
Sbjct: 181 GEAKERGARAPQKQAAPPPQSYPCRVWEKFQAALQRAAGGIAAKSTTEERAGPRGVRTVR 240
Query: 241 GQPPARPFSFFAVAKLPQGRKRRQRRRPAAAAALHARRRLLLLVKSYFARGGTGAEPGVT 300
GQPPARPFSFFAVAKLPQGRKRRQRRRPAAAAALHARRRLLLLVKSYFARGGTGAEPGVT
Sbjct: 241 GQPPARPFSFFAVAKLPQGRKRRQRRRPAAAAALHARRRLLLLVKSYFARGGTGAEPGVT 300
Query: 301 SPRGLRALLRNAGSGAAPPPPPAGETRASPGRAPRAAFVRSLGPAASRCSEGASEKGEPA 360
SPRGLRALLRNAGSGAAPPPPPAGETRASPGRAPRAAFVRSLGPAASRCSEGASEKGEPA
Sbjct: 301 SPRGLRALLRNAGSGAAPPPPPAGETRASPGRAPRAAFVRSLGPAASRCSEGASEKGEPA 360
Query: 361 QLAALFQNSEFERREFGKPCDQTTEDARRETPAVRGEASWGSVPRWRSPRAVAD 414
QLAALFQNSEFERREFGKPCDQTTEDARRETPAVRGEASWGSVPRWRSPRAVAD
Sbjct: 361 QLAALFQNSEFERREFGKPCDQTTEDARRETPAVRGEASWGSVPRWRSPRAVAD 414
>gi|239748964 PREDICTED: hypothetical protein XP_002346869 [Homo
sapiens]
Length = 414
Score = 837 bits (2162), Expect = 0.0
Identities = 414/414 (100%), Positives = 414/414 (100%)
Query: 1 MTMPWVFAIQQNIFSYFHFHLPISEKSSIMDTKIKLDLPLAVQTRKLTLPALMRPRTVLN 60
MTMPWVFAIQQNIFSYFHFHLPISEKSSIMDTKIKLDLPLAVQTRKLTLPALMRPRTVLN
Sbjct: 1 MTMPWVFAIQQNIFSYFHFHLPISEKSSIMDTKIKLDLPLAVQTRKLTLPALMRPRTVLN 60
Query: 61 DVGKHSPDLLRREGSVCVIDGEWNGRQQQNNSSKSYRPQAQTLKTKAAWKQGLHNNVRNC 120
DVGKHSPDLLRREGSVCVIDGEWNGRQQQNNSSKSYRPQAQTLKTKAAWKQGLHNNVRNC
Sbjct: 61 DVGKHSPDLLRREGSVCVIDGEWNGRQQQNNSSKSYRPQAQTLKTKAAWKQGLHNNVRNC 120
Query: 121 QVQSKLFASCGFSQERGCRFSRLLHHPLATTASPSAPRTPAADALASQAKLGRTGLGPIP 180
QVQSKLFASCGFSQERGCRFSRLLHHPLATTASPSAPRTPAADALASQAKLGRTGLGPIP
Sbjct: 121 QVQSKLFASCGFSQERGCRFSRLLHHPLATTASPSAPRTPAADALASQAKLGRTGLGPIP 180
Query: 181 GEAKERGARAPQKQAAPPPQSYPCRVWEKFQAALQRAAGGIAAKSTTEERAGPRGVRTVR 240
GEAKERGARAPQKQAAPPPQSYPCRVWEKFQAALQRAAGGIAAKSTTEERAGPRGVRTVR
Sbjct: 181 GEAKERGARAPQKQAAPPPQSYPCRVWEKFQAALQRAAGGIAAKSTTEERAGPRGVRTVR 240
Query: 241 GQPPARPFSFFAVAKLPQGRKRRQRRRPAAAAALHARRRLLLLVKSYFARGGTGAEPGVT 300
GQPPARPFSFFAVAKLPQGRKRRQRRRPAAAAALHARRRLLLLVKSYFARGGTGAEPGVT
Sbjct: 241 GQPPARPFSFFAVAKLPQGRKRRQRRRPAAAAALHARRRLLLLVKSYFARGGTGAEPGVT 300
Query: 301 SPRGLRALLRNAGSGAAPPPPPAGETRASPGRAPRAAFVRSLGPAASRCSEGASEKGEPA 360
SPRGLRALLRNAGSGAAPPPPPAGETRASPGRAPRAAFVRSLGPAASRCSEGASEKGEPA
Sbjct: 301 SPRGLRALLRNAGSGAAPPPPPAGETRASPGRAPRAAFVRSLGPAASRCSEGASEKGEPA 360
Query: 361 QLAALFQNSEFERREFGKPCDQTTEDARRETPAVRGEASWGSVPRWRSPRAVAD 414
QLAALFQNSEFERREFGKPCDQTTEDARRETPAVRGEASWGSVPRWRSPRAVAD
Sbjct: 361 QLAALFQNSEFERREFGKPCDQTTEDARRETPAVRGEASWGSVPRWRSPRAVAD 414
>gi|239742984 PREDICTED: hypothetical protein XP_002342711 [Homo
sapiens]
Length = 414
Score = 837 bits (2162), Expect = 0.0
Identities = 414/414 (100%), Positives = 414/414 (100%)
Query: 1 MTMPWVFAIQQNIFSYFHFHLPISEKSSIMDTKIKLDLPLAVQTRKLTLPALMRPRTVLN 60
MTMPWVFAIQQNIFSYFHFHLPISEKSSIMDTKIKLDLPLAVQTRKLTLPALMRPRTVLN
Sbjct: 1 MTMPWVFAIQQNIFSYFHFHLPISEKSSIMDTKIKLDLPLAVQTRKLTLPALMRPRTVLN 60
Query: 61 DVGKHSPDLLRREGSVCVIDGEWNGRQQQNNSSKSYRPQAQTLKTKAAWKQGLHNNVRNC 120
DVGKHSPDLLRREGSVCVIDGEWNGRQQQNNSSKSYRPQAQTLKTKAAWKQGLHNNVRNC
Sbjct: 61 DVGKHSPDLLRREGSVCVIDGEWNGRQQQNNSSKSYRPQAQTLKTKAAWKQGLHNNVRNC 120
Query: 121 QVQSKLFASCGFSQERGCRFSRLLHHPLATTASPSAPRTPAADALASQAKLGRTGLGPIP 180
QVQSKLFASCGFSQERGCRFSRLLHHPLATTASPSAPRTPAADALASQAKLGRTGLGPIP
Sbjct: 121 QVQSKLFASCGFSQERGCRFSRLLHHPLATTASPSAPRTPAADALASQAKLGRTGLGPIP 180
Query: 181 GEAKERGARAPQKQAAPPPQSYPCRVWEKFQAALQRAAGGIAAKSTTEERAGPRGVRTVR 240
GEAKERGARAPQKQAAPPPQSYPCRVWEKFQAALQRAAGGIAAKSTTEERAGPRGVRTVR
Sbjct: 181 GEAKERGARAPQKQAAPPPQSYPCRVWEKFQAALQRAAGGIAAKSTTEERAGPRGVRTVR 240
Query: 241 GQPPARPFSFFAVAKLPQGRKRRQRRRPAAAAALHARRRLLLLVKSYFARGGTGAEPGVT 300
GQPPARPFSFFAVAKLPQGRKRRQRRRPAAAAALHARRRLLLLVKSYFARGGTGAEPGVT
Sbjct: 241 GQPPARPFSFFAVAKLPQGRKRRQRRRPAAAAALHARRRLLLLVKSYFARGGTGAEPGVT 300
Query: 301 SPRGLRALLRNAGSGAAPPPPPAGETRASPGRAPRAAFVRSLGPAASRCSEGASEKGEPA 360
SPRGLRALLRNAGSGAAPPPPPAGETRASPGRAPRAAFVRSLGPAASRCSEGASEKGEPA
Sbjct: 301 SPRGLRALLRNAGSGAAPPPPPAGETRASPGRAPRAAFVRSLGPAASRCSEGASEKGEPA 360
Query: 361 QLAALFQNSEFERREFGKPCDQTTEDARRETPAVRGEASWGSVPRWRSPRAVAD 414
QLAALFQNSEFERREFGKPCDQTTEDARRETPAVRGEASWGSVPRWRSPRAVAD
Sbjct: 361 QLAALFQNSEFERREFGKPCDQTTEDARRETPAVRGEASWGSVPRWRSPRAVAD 414
>gi|122937321 UNC homeobox [Homo sapiens]
Length = 531
Score = 48.5 bits (114), Expect = 1e-05
Identities = 72/238 (30%), Positives = 92/238 (38%), Gaps = 44/238 (18%)
Query: 154 PSAPRTPAADALASQAKLGRTGLGPIP-GEAKERG----ARAPQKQAAPPPQSYPCRVWE 208
P P PAA + A G G P P GE G A P +++ PQ P R +
Sbjct: 246 PPEPPPPAAKGPGAHAS-GAAGTAPAPPGEPPAPGTCDPAFYPSQRSGAGPQPRPGRPAD 304
Query: 209 KFQAALQRAAGGIAAKSTTEERAGPRGVRTVRGQPPARPFSFFA-VAKLPQGRKRRQRRR 267
K A+ G AA + E A G P A PFS + ++ P RK
Sbjct: 305 KDAAS----CGPGAAVAAVERGAA--------GLPKASPFSVESLLSDSPPRRKAASNAA 352
Query: 268 PAAAAALHARRRLLLLVKSYFARGGTGAEPGVTSPRGL----RALLRNAGSGAAP---PP 320
AAAA L L ++ +G P +T P G AL AG AP PP
Sbjct: 353 AAAAAGLDFAPGLPCAPRTLIGKGHFLLYP-ITQPLGFLVPQAALKGGAGLEPAPKDAPP 411
Query: 321 ----PPAGETRAS------PGRAPRAAFVRSLGPAASRCSEGASEKGEPAQLAALFQN 368
PPA +AS PG AP +AF R R + + G PA A F++
Sbjct: 412 APAVPPAPPAQASFGAFSGPGGAPDSAFAR-------RSPDAVASPGAPAPAPAPFRD 462
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 45.8 bits (107), Expect = 7e-05
Identities = 57/214 (26%), Positives = 75/214 (35%), Gaps = 24/214 (11%)
Query: 153 SPSAPRTPAADALASQAKLGRTGLGPIPGEAKERGARAPQKQAAPPPQSYPCRVWEKFQA 212
+P P L A LG+ GL +PG ++G P P P+ P V K
Sbjct: 218 APGQGGAPGPPGLPGPAGLGKPGLDGLPGAPGDKGESGP--PGVPGPRGEPGAVGPKGPP 275
Query: 213 ALQR-AAGGIAAKSTTEERAGPRGVRTVRGQPPARPFSFFAVAKLPQGRKRRQRRRPAAA 271
+ G A + +G +G RG P + + + LP + R PA
Sbjct: 276 GVDGVGVPGAAGLPGPQGPSGAKGEPGTRGPPGLIGPTGYGMPGLP---GPKGDRGPAGV 332
Query: 272 AALHARRRLLLLVKSYFARGGTGAEPGVTSPRGLRALLRNAGSGAAP----PPPPAGETR 327
L R G EPG P+GL GS P PP P GE
Sbjct: 333 PGLLGDR----------GEPGEDGEPGEQGPQGLGGPPGLPGSAGLPGRRGPPGPKGE-- 380
Query: 328 ASPGRAPRAAFVR-SLGPAASRCSEGA-SEKGEP 359
A PG P +R GP+ G E+G P
Sbjct: 381 AGPGGPPGVPGIRGDQGPSGLAGKPGVPGERGLP 414
>gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo
sapiens]
Length = 647
Score = 44.7 bits (104), Expect = 2e-04
Identities = 75/263 (28%), Positives = 98/263 (37%), Gaps = 61/263 (23%)
Query: 126 LFASCGFSQERGCRFSRLLHHPLATTA-SPS--------APRTPAADALASQAKLGRTG- 175
L CG + RGC +L + P A A SP+ APR A A A A GR G
Sbjct: 189 LRGQCGPAARRGCAQEQLRNAPWAPRAHSPAGRLALGLIAPRRGAGRAGAGAAACGRRGR 248
Query: 176 -LGPIPGEAKE----RGARAPQKQAAPPPQSYPCRVWEKFQAALQRAAGGIAAKSTTEER 230
P+ G ++ R P+ + P + PC AAL R+ G + + R
Sbjct: 249 IAAPLSGVVQKASYLRPKNLPRLLSMPSAAARPC------GAALPRS--GFSGR--PRGR 298
Query: 231 AGPRGVRTVRGQPPARPFSFFAVAKLPQGRKRRQRRRPAAAAALHARRRLLLLVKSYFAR 290
G R RG+ PA G R +PA+ AL AR R
Sbjct: 299 GGAAAGRGSRGEHPA----------CGVGLARGTAPQPASTWALAARPR----------A 338
Query: 291 GGT-----GAEPGVTSPRGLRALLRNAGSGAAPP-----PPPAGETRASPGRAPRAAF-- 338
GGT A+ G G R AG+ A+ P PPP R P R PRA+
Sbjct: 339 GGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASEPARVWSPPP---RRQRPRRLPRASLQE 395
Query: 339 -VRSLGPAASRCSEGASEKGEPA 360
+ P A G + +G A
Sbjct: 396 EPKRRPPCARPSGAGPAREGPAA 418
>gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo
sapiens]
Length = 647
Score = 44.7 bits (104), Expect = 2e-04
Identities = 75/263 (28%), Positives = 98/263 (37%), Gaps = 61/263 (23%)
Query: 126 LFASCGFSQERGCRFSRLLHHPLATTA-SPS--------APRTPAADALASQAKLGRTG- 175
L CG + RGC +L + P A A SP+ APR A A A A GR G
Sbjct: 189 LRGQCGPAARRGCAQEQLRNAPWAPRAHSPAGRLALGLIAPRRGAGRAGAGAAACGRRGR 248
Query: 176 -LGPIPGEAKE----RGARAPQKQAAPPPQSYPCRVWEKFQAALQRAAGGIAAKSTTEER 230
P+ G ++ R P+ + P + PC AAL R+ G + + R
Sbjct: 249 IAAPLSGVVQKASYLRPKNLPRLLSMPSAAARPC------GAALPRS--GFSGR--PRGR 298
Query: 231 AGPRGVRTVRGQPPARPFSFFAVAKLPQGRKRRQRRRPAAAAALHARRRLLLLVKSYFAR 290
G R RG+ PA G R +PA+ AL AR R
Sbjct: 299 GGAAAGRGSRGEHPA----------CGVGLARGTAPQPASTWALAARPR----------A 338
Query: 291 GGT-----GAEPGVTSPRGLRALLRNAGSGAAPP-----PPPAGETRASPGRAPRAAF-- 338
GGT A+ G G R AG+ A+ P PPP R P R PRA+
Sbjct: 339 GGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASEPARVWSPPP---RRQRPRRLPRASLQE 395
Query: 339 -VRSLGPAASRCSEGASEKGEPA 360
+ P A G + +G A
Sbjct: 396 EPKRRPPCARPSGAGPAREGPAA 418
>gi|169207312 PREDICTED: hypothetical protein [Homo sapiens]
Length = 414
Score = 43.5 bits (101), Expect = 4e-04
Identities = 69/272 (25%), Positives = 98/272 (36%), Gaps = 57/272 (20%)
Query: 153 SPSAPRTPAADALASQAKLGRTGLGP----IPGEAKERGA--------RAPQKQAAPPPQ 200
+PS PR P ++ G T GP PG K RG+ + Q+ AAPPP
Sbjct: 148 NPSPPRPPEPIPASAAVTSGLTARGPNTSATPGPQKGRGSAERTNHIPKDKQRVAAPPPP 207
Query: 201 SYPCRVWEKFQAALQRAAGGIAAKSTTEERAGPRGVRTVRGQPPARPFSFFAVAKLPQGR 260
P + R + G++ T E AG R + R +P R SF ++++P R
Sbjct: 208 ERP-------RVPFCRGSSGLSVP-TPPEHAGGRRKKFTRTRPLPRTSSF--LSEVPSTR 257
Query: 261 K-------------------RRQRRRPAAAAALHARRRLLLLVKSYFARGGTGAEPGVTS 301
R RPA A RL L GG+ + G +
Sbjct: 258 PLCATSSSHSAPLPFFWSPLRNPSPRPAPACG---ELRLGRLSPPRADTGGSSSG-GCSG 313
Query: 302 PRGLRALLRNAGSGAAPPPPPAGETRASPGRAPRAAFVRSLGPAASRCSEGASEKGEPAQ 361
P L APP P A +PG A R GPA S + EP +
Sbjct: 314 PDSKHRTL------PAPPAPTAWPAAGAPGAPNPAESRRGPGPAQG----PPSRRDEPRR 363
Query: 362 LAALFQNSEFERREFGKPCDQTTEDARRETPA 393
+ + E E ++T RR++P+
Sbjct: 364 VVIAARECGREGSELPPSGEET--PGRRKSPS 393
>gi|239750650 PREDICTED: hypothetical protein [Homo sapiens]
Length = 414
Score = 43.5 bits (101), Expect = 4e-04
Identities = 69/272 (25%), Positives = 98/272 (36%), Gaps = 57/272 (20%)
Query: 153 SPSAPRTPAADALASQAKLGRTGLGP----IPGEAKERGA--------RAPQKQAAPPPQ 200
+PS PR P ++ G T GP PG K RG+ + Q+ AAPPP
Sbjct: 148 NPSPPRPPEPIPASAAVTSGLTARGPNTSATPGPQKGRGSAERTNHIPKDKQRVAAPPPP 207
Query: 201 SYPCRVWEKFQAALQRAAGGIAAKSTTEERAGPRGVRTVRGQPPARPFSFFAVAKLPQGR 260
P + R + G++ T E AG R + R +P R SF ++++P R
Sbjct: 208 ERP-------RVPFCRGSSGLSVP-TPPEHAGGRRKKFTRTRPLPRTSSF--LSEVPSTR 257
Query: 261 K-------------------RRQRRRPAAAAALHARRRLLLLVKSYFARGGTGAEPGVTS 301
R RPA A RL L GG+ + G +
Sbjct: 258 PLCATSSSHSAPLPFFWSPLRNPSPRPAPACG---ELRLGRLSPPRADTGGSSSG-GCSG 313
Query: 302 PRGLRALLRNAGSGAAPPPPPAGETRASPGRAPRAAFVRSLGPAASRCSEGASEKGEPAQ 361
P L APP P A +PG A R GPA S + EP +
Sbjct: 314 PDSKHRTL------PAPPAPTAWPAAGAPGAPNPAESRRGPGPAQG----PPSRRDEPRR 363
Query: 362 LAALFQNSEFERREFGKPCDQTTEDARRETPA 393
+ + E E ++T RR++P+
Sbjct: 364 VVIAARECGREGSELPPSGEET--PGRRKSPS 393
>gi|89037350 PREDICTED: hypothetical protein [Homo sapiens]
Length = 414
Score = 43.5 bits (101), Expect = 4e-04
Identities = 69/272 (25%), Positives = 98/272 (36%), Gaps = 57/272 (20%)
Query: 153 SPSAPRTPAADALASQAKLGRTGLGP----IPGEAKERGA--------RAPQKQAAPPPQ 200
+PS PR P ++ G T GP PG K RG+ + Q+ AAPPP
Sbjct: 148 NPSPPRPPEPIPASAAVTSGLTARGPNTSATPGPQKGRGSAERTNHIPKDKQRVAAPPPP 207
Query: 201 SYPCRVWEKFQAALQRAAGGIAAKSTTEERAGPRGVRTVRGQPPARPFSFFAVAKLPQGR 260
P + R + G++ T E AG R + R +P R SF ++++P R
Sbjct: 208 ERP-------RVPFCRGSSGLSVP-TPPEHAGGRRKKFTRTRPLPRTSSF--LSEVPSTR 257
Query: 261 K-------------------RRQRRRPAAAAALHARRRLLLLVKSYFARGGTGAEPGVTS 301
R RPA A RL L GG+ + G +
Sbjct: 258 PLCATSSSHSAPLPFFWSPLRNPSPRPAPACG---ELRLGRLSPPRADTGGSSSG-GCSG 313
Query: 302 PRGLRALLRNAGSGAAPPPPPAGETRASPGRAPRAAFVRSLGPAASRCSEGASEKGEPAQ 361
P L APP P A +PG A R GPA S + EP +
Sbjct: 314 PDSKHRTL------PAPPAPTAWPAAGAPGAPNPAESRRGPGPAQG----PPSRRDEPRR 363
Query: 362 LAALFQNSEFERREFGKPCDQTTEDARRETPA 393
+ + E E ++T RR++P+
Sbjct: 364 VVIAARECGREGSELPPSGEET--PGRRKSPS 393
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 43.5 bits (101), Expect = 4e-04
Identities = 32/77 (41%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 290 RGGTGAEPGVTSPRGLRALLRNAGSGA--APPPPPAGETRASPGRAPRAAFVRSLGPAAS 347
RG T P +PRG A A APPPPPA A+P RAPRAA + P
Sbjct: 104 RGATPPAPP-RAPRGAPAAAAAAAPPPTPAPPPPPAPVAAAAPARAPRAAAAAATAPP-- 160
Query: 348 RCSEGASEKGEPAQLAA 364
S G ++ G AQ AA
Sbjct: 161 --SPGPAQPGPRAQRAA 175
Score = 32.3 bits (72), Expect = 0.81
Identities = 55/204 (26%), Positives = 66/204 (32%), Gaps = 57/204 (27%)
Query: 135 ERGCRFSRLLHHPLATTASPSAPRTPAADALASQAKLGRTGLGPIPGEAKERGARAPQKQ 194
ER CR R H P P R + +A L + G I R + P++
Sbjct: 52 ERICRMVRRRHGP-----EPERTRAELEKLIQQRAVLRVSYKGSISYRNAAR-VQPPRRG 105
Query: 195 AAPP-PQSYPCRVWEKFQAALQRAAGGIAAKSTTEERAGPRGVRTVRGQPPARPFSFFAV 253
A PP P P R A AA + P PP P + A
Sbjct: 106 ATPPAPPRAP------------RGAPAAAAAAAPPPTPAP--------PPPPAPVAAAAP 145
Query: 254 AKLPQGRKRRQRRRPAAAAALHARRRLLLLVKSYFARGGTGAEPGVTSPRGLRALLRNAG 313
A+ P R AAAAA PG P G RA + A
Sbjct: 146 ARAP---------RAAAAAAT------------------APPSPGPAQP-GPRA--QRAA 175
Query: 314 SGAAPPPPPAGETRASPGRAPRAA 337
AAPPP PA +P PR A
Sbjct: 176 PLAAPPPAPAAPPAVAPPAGPRRA 199
Score = 32.3 bits (72), Expect = 0.81
Identities = 31/93 (33%), Positives = 35/93 (37%), Gaps = 4/93 (4%)
Query: 181 GEAKERGARAPQKQAAPPPQSYPCRVWEKFQAALQRAAGGIAAKSTTEERAGPRGVRTV- 239
G A AP APPP P +A AA A S + GPR R
Sbjct: 117 GAPAAAAAAAPPPTPAPPPPPAPVAAAAPARAPRAAAAAATAPPSPGPAQPGPRAQRAAP 176
Query: 240 RGQPPARPFSFFAVAKLPQGRKRRQRRRPAAAA 272
PP P + AVA P G +R PA AA
Sbjct: 177 LAAPPPAPAAPPAVAP-PAGPRRAP--PPAVAA 206
>gi|239749709 PREDICTED: hypothetical protein [Homo sapiens]
Length = 178
Score = 42.0 bits (97), Expect = 0.001
Identities = 58/203 (28%), Positives = 73/203 (35%), Gaps = 40/203 (19%)
Query: 163 DALASQAKLGRTGLGPIPGEAKERGARAPQKQAAPPPQSYPCRVWEKFQAALQRAAGGIA 222
+A ++ GR+GLG G + RG + RVW +RA GG A
Sbjct: 3 EASSAPGGRGRSGLGGSGGAPRVRG------RGTAVGVGIGVRVWRS-----RRAEGGGA 51
Query: 223 AKSTTEERAG-PRGVRTVRGQPPARPFSFFAVAKLPQGRKRRQRRRPAAAAALHARRRLL 281
+ G PR R Q A GR R RL
Sbjct: 52 EAAAARTAGGEPRAQRQAGSQ-----------ADEEGGRPERVNHGQVPQG-----ERLR 95
Query: 282 LLVKSYFARGGTGAEPGVTSPR-----GLRALLRNAGSGAAPPPPPAGETRASPG-RAPR 335
+ K +G GAE + P GL L R AG+GAA A TR+ G RA
Sbjct: 96 AMAKGGVGKGSQGAERQASRPHAEHRLGLSHLTRAAGAGAARRRAGAARTRSPKGCRAGA 155
Query: 336 AAFVRSLGPAA------SRCSEG 352
A R+ GPAA +RC G
Sbjct: 156 ARLERAGGPAAPARVPPARCPAG 178
>gi|239753839 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 40.8 bits (94), Expect = 0.002
Identities = 61/209 (29%), Positives = 77/209 (36%), Gaps = 35/209 (16%)
Query: 147 PLATTASPSAPRTPAADALASQAKLGRTGLGPIPGEAKERGARAPQKQAAPPPQSYPCRV 206
PL A +A PA AS+A R G P A RG A +++ P +
Sbjct: 74 PLCFPARSAAWGPPAR---ASRAAGRRAGPAGPPCRAPGRGRAAATRRSPAPGTA----- 125
Query: 207 WEKFQAALQRAAGGIAAKSTTEERAGPRGVRTVRGQPPARPFSFFAVAKLPQGRKRRQRR 266
A ++RA G AA S AG R V R PP S G R R
Sbjct: 126 -RGSPAGVERAGGATAASS-----AGTRSVPARRLPPPCGGTSL--------GAGSRALR 171
Query: 267 RPAAAAALHARRRLLLLVKSYFARGGTGA-EPGV--TSPRGLRALLRNAGSGAAPPPPPA 323
RP +AA + + + A G GA PG T P G A + + PPPPA
Sbjct: 172 RPGSAALPRSPSSS----RRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPA 227
Query: 324 GETRASPGRAPRAAFVRSLGPAASRCSEG 352
AP AAF + C+ G
Sbjct: 228 ------VAGAPAAAFRGWVAAPDPGCTPG 250
Score = 33.9 bits (76), Expect = 0.28
Identities = 31/111 (27%), Positives = 40/111 (36%), Gaps = 14/111 (12%)
Query: 310 RNAGSGAAPPPPPAGETRASPGRAPRAAFVRSLGPAASRCSEGASEKGEPAQLAALFQNS 369
R AG A P PP +PGR AA RS P +R S E+ A A+
Sbjct: 92 RAAGRRAGPAGPPC----RAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTR 147
Query: 370 EFERREFGKPCDQTTEDARRETPAVRGEAS----------WGSVPRWRSPR 410
R PC T+ A G A+ W ++P +PR
Sbjct: 148 SVPARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPR 198
>gi|239750710 PREDICTED: hypothetical protein [Homo sapiens]
Length = 317
Score = 40.8 bits (94), Expect = 0.002
Identities = 51/185 (27%), Positives = 76/185 (41%), Gaps = 22/185 (11%)
Query: 154 PSAPRTPAADALASQAK----LGRTGLGP---IPGEAKERGARAPQKQAAPPPQSYPCRV 206
P+ P +PA Q L R+G P +P + + P + A+ P Y
Sbjct: 54 PAPPISPARPTSFLQGPGSCLLQRSGQAPYFFLPDFTTPQASAWPLQAASEEPLYY---- 109
Query: 207 WEKFQAALQRAAGGIAAKSTTEERAGPRGVRTVRGQPPARPFSFFAVAKLPQGRKRRQRR 266
+ ++ G A K + E P+ R+ R + R S ++ P R R +
Sbjct: 110 LQTLSSSQNPFWGLQAGKHSAPEVLWPKASRSKRTR---RRASVAVISGRPGSRSRERCG 166
Query: 267 RPAAAAALHARRRLLLLVKSYFARGGTGAEPGVTSP-RGLRALLRNAGSGAAPPPPPAGE 325
R + + RR LLV A+GG GA+ G + GLRA L A +G PPPP A +
Sbjct: 167 RGSGSW-----RRTGLLVAD--AKGGAGAQRGESQGCTGLRAALSTAAAGELPPPPAAPD 219
Query: 326 TRASP 330
P
Sbjct: 220 HGGVP 224
>gi|239745016 PREDICTED: hypothetical protein XP_002343331 [Homo
sapiens]
Length = 317
Score = 40.8 bits (94), Expect = 0.002
Identities = 51/185 (27%), Positives = 76/185 (41%), Gaps = 22/185 (11%)
Query: 154 PSAPRTPAADALASQAK----LGRTGLGP---IPGEAKERGARAPQKQAAPPPQSYPCRV 206
P+ P +PA Q L R+G P +P + + P + A+ P Y
Sbjct: 54 PAPPISPARPTSFLQGPGSCLLQRSGQAPYFFLPDFTTPQASAWPLQAASEEPLYY---- 109
Query: 207 WEKFQAALQRAAGGIAAKSTTEERAGPRGVRTVRGQPPARPFSFFAVAKLPQGRKRRQRR 266
+ ++ G A K + E P+ R+ R + R S ++ P R R +
Sbjct: 110 LQTLSSSQNPFWGLQAGKHSAPEVLWPKASRSKRTR---RRASVAVISGRPGSRSRERCG 166
Query: 267 RPAAAAALHARRRLLLLVKSYFARGGTGAEPGVTSP-RGLRALLRNAGSGAAPPPPPAGE 325
R + + RR LLV A+GG GA+ G + GLRA L A +G PPPP A +
Sbjct: 167 RGSGSW-----RRTGLLVAD--AKGGAGAQRGESQGCTGLRAALSTAAAGELPPPPAAPD 219
Query: 326 TRASP 330
P
Sbjct: 220 HGGVP 224
>gi|157785645 SPEG complex locus [Homo sapiens]
Length = 3267
Score = 39.7 bits (91), Expect = 0.005
Identities = 57/239 (23%), Positives = 93/239 (38%), Gaps = 29/239 (12%)
Query: 133 SQERGCRFSRLLHHPLATTASPSAPRTPAADALASQAKLGRTGLGPIPG-------EAKE 185
++E+ + S+ LA TA S P+TP ++A + LGR+ G + E
Sbjct: 350 TEEKRGKKSKSSGPSLAGTAE-SRPQTPLSEASGRLSALGRSPRLVRAGSRILDKLQFFE 408
Query: 186 RGARAPQKQAAPPPQSYPCRVWEKFQAALQRAAGGIAAKSTTEERAGPRGVRTVRGQPPA 245
R+ ++ +PP P R W + A + + ER P G +
Sbjct: 409 ERRRSLERSDSPPA---PLRPWVPLRKAR-------SLEQPKSERGAPWGTPGASQEELR 458
Query: 246 RPFSFFAVAKLPQGR-----KRRQRRRPAAAAALHARRRLLLLVKSYFARGGTGAEPGVT 300
P S +L Q + +R ++R PA+ L + L + +S T E V
Sbjct: 459 APGSVAERRRLFQQKAASLDERTRQRSPASDLELRFAQELGRIRRS------TSREELVR 512
Query: 301 SPRGLRALLRNAGSGAAPPPPPAGETRASPGRAPRAAFVRSLGPAASRCSEGASEKGEP 359
S LRA L+ A S P PP ++P + + + P+ S + E G P
Sbjct: 513 SHESLRATLQRAPSPREPGEPPLFSRPSTPKTSRAVSPAAAQPPSPSSAEKPGDEPGRP 571
Score = 35.8 bits (81), Expect = 0.073
Identities = 77/272 (28%), Positives = 97/272 (35%), Gaps = 48/272 (17%)
Query: 155 SAPRTPAADALASQAKLGRTGLGPI-PGEAKERGARAPQKQAAPPPQSYPCRVWEKFQAA 213
S R D LG G P + +E+G Q Q AP P++ P E A
Sbjct: 1944 SGSRVSLTDIPTEDEALGTPETGAATPMDWQEQGRAPSQDQEAPSPEALPSPGQEPAAGA 2003
Query: 214 LQRAAGGIAAKSTTEE---RAGPRGVRTVRGQPPARPFSFFAVAKLPQGRKRRQRRRPAA 270
R G + S+ E RAGPR + R A +LP QRR P+
Sbjct: 2004 SPR-RGELRRGSSAESALPRAGPREL--------GRGLHKAASVELP------QRRSPSP 2048
Query: 271 AAALHARRRL--------LLLVKSYFARGG--TGAEPGVTSP----RGLRA----LLRNA 312
A AR L L ++ RGG G G+ P G RA + R A
Sbjct: 2049 GATRLARGGLGEGEYAQRLQALRQRLLRGGPEDGKVSGLRGPLLESLGGRARDPRMARAA 2108
Query: 313 GSGAAPPPPPAGETRA-------SPGRA-PRAAFVRSLGPAASRCSE-GASEKGEPAQLA 363
S AAP P E R S G A PR R+ P + GA E L+
Sbjct: 2109 SSEAAPHHQPPLENRGLQKSSSFSQGEAEPRGRHRRAGAPLEIPVARLGARRLQESPSLS 2168
Query: 364 AL--FQNSEFERREFGKPCDQTTEDARRETPA 393
AL Q S R KP + + TP+
Sbjct: 2169 ALSEAQPSSPARPSAPKPSTPKSAEPSATTPS 2200
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 39.7 bits (91), Expect = 0.005
Identities = 55/208 (26%), Positives = 79/208 (37%), Gaps = 38/208 (18%)
Query: 148 LATTASPSAPRTPAADALASQAKLGRTGLGPIPGEAKERGARAPQKQAAPPPQSYPCRVW 207
L + +P+ P + + LA LG GLGP G P PPP+ P +
Sbjct: 191 LKPSQAPTVPSSLGFERLAGGGVLGPAGLGPAQTPPYRPGPPDPP----PPPRHLPTQ-- 244
Query: 208 EKFQAALQRAAGGIAAKSTTEERAGPRGVRTVRGQPPARPFSFFAVAKLP-QGRKRRQRR 266
F +A AA+ ++ + G G PP LP Q + +
Sbjct: 245 --FNLLASSSAAAAAAEQSSPQLYNFSGAAP--GPPPPE-------RALPRQDTVIKHYQ 293
Query: 267 RPAAAAA------LHARRRLLLLVKSYFARGGTGAEPGVTSPRGLRALLRNAGSGAAPPP 320
RPA+A HA ++ Y + GG+ G RA L + G P
Sbjct: 294 RPASAQPPPPPPPAHA-------LQHYLSCGGSYPS------MGHRANLACSPLGGGEPS 340
Query: 321 PPAGE-TRASPGRAPRAAFVRSLGPAAS 347
P AGE ++A P A A R+ GP A+
Sbjct: 341 PGAGEPSKAGPSGATAGASGRATGPEAA 368
Score = 33.9 bits (76), Expect = 0.28
Identities = 53/228 (23%), Positives = 73/228 (32%), Gaps = 30/228 (13%)
Query: 142 RLLHHPLAT-----TASPSAPRTPAADALASQAKLGRTGLGPIPGEAKERGARAPQKQAA 196
R L P AT SP AP + LAS L G G A + +
Sbjct: 566 RPLQSPPATGRPPGVGSPGAPGKYLSSVLASAPFLAPPGAGSYAAGAGGYKGKGDGSELL 625
Query: 197 PPPQSYPCRVWEKFQAALQR-----------AAGGIAAKSTTEERAGPRGVRTVRGQPPA 245
P P E + +Q A G+ + + + G G PP
Sbjct: 626 AGPGGPPAERTEDEEFLIQHLLQAPSPPRTSGADGLVGEDGAADASKGLGGSGGAGGPPG 685
Query: 246 RPFSFFAVAKLPQGRKRRQRRRPAAAAALHARRRLLLLVKSYFARGGTGAEPGVTSPRGL 305
P+ +AK R Q +A+ L L G E G +P GL
Sbjct: 686 TPYE---LAKEDPQRYHLQSVIRTSASLDEGATAALELGLGRLKEKKKGPERGGETPEGL 742
Query: 306 RALLRNAGSGA---------APPPPPAGETRASPGRAPRAAFVRSLGP 344
+ + G+GA +PPPPP T S P + + GP
Sbjct: 743 ATSVVHYGAGAKELGAFLQKSPPPPP--PTAQSTQPTPHGLLLEAGGP 788
>gi|239756433 PREDICTED: hypothetical protein [Homo sapiens]
Length = 513
Score = 39.3 bits (90), Expect = 0.007
Identities = 35/85 (41%), Positives = 40/85 (47%), Gaps = 10/85 (11%)
Query: 252 AVAKLPQGRKRRQRRRPAAAAALHARRRLLLLVKSYFARGGTGAEPGVTSPRGLRALLRN 311
A + G +RR RR PAAAA RR LL AR G PG RA
Sbjct: 267 AAGVVATGLRRRHRRPPAAAA-----RRPLLAA----ARRGALPAPGALIGPAPRARRPL 317
Query: 312 AGSGAAPPPPPAGETRASP-GRAPR 335
A + A PPPPPAG ++P G A R
Sbjct: 318 ACTFANPPPPPAGCGSSAPIGEARR 342
>gi|239750970 PREDICTED: hypothetical protein XP_002347634 [Homo
sapiens]
Length = 513
Score = 39.3 bits (90), Expect = 0.007
Identities = 35/85 (41%), Positives = 40/85 (47%), Gaps = 10/85 (11%)
Query: 252 AVAKLPQGRKRRQRRRPAAAAALHARRRLLLLVKSYFARGGTGAEPGVTSPRGLRALLRN 311
A + G +RR RR PAAAA RR LL AR G PG RA
Sbjct: 267 AAGVVATGLRRRHRRPPAAAA-----RRPLLAA----ARRGALPAPGALIGPAPRARRPL 317
Query: 312 AGSGAAPPPPPAGETRASP-GRAPR 335
A + A PPPPPAG ++P G A R
Sbjct: 318 ACTFANPPPPPAGCGSSAPIGEARR 342
>gi|239745376 PREDICTED: hypothetical protein XP_002343484 [Homo
sapiens]
Length = 513
Score = 39.3 bits (90), Expect = 0.007
Identities = 35/85 (41%), Positives = 40/85 (47%), Gaps = 10/85 (11%)
Query: 252 AVAKLPQGRKRRQRRRPAAAAALHARRRLLLLVKSYFARGGTGAEPGVTSPRGLRALLRN 311
A + G +RR RR PAAAA RR LL AR G PG RA
Sbjct: 267 AAGVVATGLRRRHRRPPAAAA-----RRPLLAA----ARRGALPAPGALIGPAPRARRPL 317
Query: 312 AGSGAAPPPPPAGETRASP-GRAPR 335
A + A PPPPPAG ++P G A R
Sbjct: 318 ACTFANPPPPPAGCGSSAPIGEARR 342
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
[Homo sapiens]
Length = 1650
Score = 38.9 bits (89), Expect = 0.009
Identities = 53/198 (26%), Positives = 74/198 (37%), Gaps = 19/198 (9%)
Query: 168 QAKLGRTGLGPIPGEAKERGARAPQKQAAPPPQSYPCRVWEKFQAALQRAAGGIAAKSTT 227
Q G G PG + E+GAR ++ P + P + Q + A G AK T+
Sbjct: 721 QGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGP--TGPRGQRGPRGATGKSGAKGTS 778
Query: 228 EERAGPRGVRTVRGQPPARPFSFFAVAKLPQGRKRRQRRRPAAAAAL--HARRRLLLLVK 285
GP G RG P + + F K P G P L H +R +
Sbjct: 779 GGD-GPHGPPGERGLPGPQGPNGFPGPKGPPG--------PPGKDGLPGHPGQRGEV--- 826
Query: 286 SYFARGGTGAEPGVTSPRGLRALLRNAGSGAAP-PPPPAGETRASPGRAPRAAFVRSLGP 344
+ + G PGV P+G G P PP P GE + PG A + GP
Sbjct: 827 GFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGE-QGLPGTAGKEGTKGDPGP 885
Query: 345 AASRCSEG-ASEKGEPAQ 361
+ +G A +G P +
Sbjct: 886 PGAPGKDGPAGLRGFPGE 903
Score = 33.5 bits (75), Expect = 0.36
Identities = 27/80 (33%), Positives = 31/80 (38%), Gaps = 10/80 (12%)
Query: 292 GTGAEPGVTSPRGLRALLRNAGSGAAP-PPPPAGET-----RASPGRAPRAAFVRSLGPA 345
G EPGV PRG R +G P PP P G T + +PG G
Sbjct: 1136 GIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEG 1195
Query: 346 ASRCSEGA----SEKGEPAQ 361
R +GA E GEP Q
Sbjct: 1196 GPRGQDGAKGDRGEDGEPGQ 1215
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
[Homo sapiens]
Length = 1629
Score = 38.9 bits (89), Expect = 0.009
Identities = 53/198 (26%), Positives = 74/198 (37%), Gaps = 19/198 (9%)
Query: 168 QAKLGRTGLGPIPGEAKERGARAPQKQAAPPPQSYPCRVWEKFQAALQRAAGGIAAKSTT 227
Q G G PG + E+GAR ++ P + P + Q + A G AK T+
Sbjct: 700 QGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGP--TGPRGQRGPRGATGKSGAKGTS 757
Query: 228 EERAGPRGVRTVRGQPPARPFSFFAVAKLPQGRKRRQRRRPAAAAAL--HARRRLLLLVK 285
GP G RG P + + F K P G P L H +R +
Sbjct: 758 GGD-GPHGPPGERGLPGPQGPNGFPGPKGPPG--------PPGKDGLPGHPGQRGEV--- 805
Query: 286 SYFARGGTGAEPGVTSPRGLRALLRNAGSGAAP-PPPPAGETRASPGRAPRAAFVRSLGP 344
+ + G PGV P+G G P PP P GE + PG A + GP
Sbjct: 806 GFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGE-QGLPGTAGKEGTKGDPGP 864
Query: 345 AASRCSEG-ASEKGEPAQ 361
+ +G A +G P +
Sbjct: 865 PGAPGKDGPAGLRGFPGE 882
Score = 33.5 bits (75), Expect = 0.36
Identities = 27/80 (33%), Positives = 31/80 (38%), Gaps = 10/80 (12%)
Query: 292 GTGAEPGVTSPRGLRALLRNAGSGAAP-PPPPAGET-----RASPGRAPRAAFVRSLGPA 345
G EPGV PRG R +G P PP P G T + +PG G
Sbjct: 1115 GIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEG 1174
Query: 346 ASRCSEGA----SEKGEPAQ 361
R +GA E GEP Q
Sbjct: 1175 GPRGQDGAKGDRGEDGEPGQ 1194
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein
[Homo sapiens]
Length = 1736
Score = 38.9 bits (89), Expect = 0.009
Identities = 53/198 (26%), Positives = 74/198 (37%), Gaps = 19/198 (9%)
Query: 168 QAKLGRTGLGPIPGEAKERGARAPQKQAAPPPQSYPCRVWEKFQAALQRAAGGIAAKSTT 227
Q G G PG + E+GAR ++ P + P + Q + A G AK T+
Sbjct: 807 QGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGP--TGPRGQRGPRGATGKSGAKGTS 864
Query: 228 EERAGPRGVRTVRGQPPARPFSFFAVAKLPQGRKRRQRRRPAAAAAL--HARRRLLLLVK 285
GP G RG P + + F K P G P L H +R +
Sbjct: 865 GGD-GPHGPPGERGLPGPQGPNGFPGPKGPPG--------PPGKDGLPGHPGQRGEV--- 912
Query: 286 SYFARGGTGAEPGVTSPRGLRALLRNAGSGAAP-PPPPAGETRASPGRAPRAAFVRSLGP 344
+ + G PGV P+G G P PP P GE + PG A + GP
Sbjct: 913 GFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGE-QGLPGTAGKEGTKGDPGP 971
Query: 345 AASRCSEG-ASEKGEPAQ 361
+ +G A +G P +
Sbjct: 972 PGAPGKDGPAGLRGFPGE 989
Score = 33.5 bits (75), Expect = 0.36
Identities = 27/80 (33%), Positives = 31/80 (38%), Gaps = 10/80 (12%)
Query: 292 GTGAEPGVTSPRGLRALLRNAGSGAAP-PPPPAGET-----RASPGRAPRAAFVRSLGPA 345
G EPGV PRG R +G P PP P G T + +PG G
Sbjct: 1222 GIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEG 1281
Query: 346 ASRCSEGA----SEKGEPAQ 361
R +GA E GEP Q
Sbjct: 1282 GPRGQDGAKGDRGEDGEPGQ 1301
>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
Length = 1489
Score = 38.9 bits (89), Expect = 0.009
Identities = 61/204 (29%), Positives = 73/204 (35%), Gaps = 19/204 (9%)
Query: 166 ASQAKLGRTGLGPIPGEAK--ERGARAPQKQAAPPPQSYPCRV---WEKFQAALQRAAG- 219
A + L GL P E K E G + PP++ P R WEK + A
Sbjct: 1013 AGEKVLVNGGLTPPKSEDKVSENGGLRFPRNTERPPETGPWRAPGPWEKTPESWGPAPTI 1072
Query: 220 GIAAKSTTEERA-GPRGVRTVRGQPPARPFSFFAVAK---LPQGRKRRQRRRPAAAAALH 275
G A T+ ERA P V + R P K L G +RR A A
Sbjct: 1073 GEPAPETSLERAPAPSAVVSSRNGGETAPGPLGPAPKNGTLEPGTERRAPETGGAPRAPG 1132
Query: 276 ARRRLLLLVKSYFARGGTGAEPGVTSPRGLRALLRNAGSGAAPPPPPAGETRASPGRAPR 335
A R L L A GTG PG G+ A + PPPP P P
Sbjct: 1133 AGR--LDLGSGGRAPVGTGTAPGGGPGSGVDAKAGWVDNTRPQPPPP-------PLPPPP 1183
Query: 336 AAFVRSLGPAASRCSEGASEKGEP 359
A R L PA R + +GEP
Sbjct: 1184 EAQPRRLEPAPPRARPEVAPEGEP 1207
Score = 28.9 bits (63), Expect = 9.0
Identities = 37/138 (26%), Positives = 45/138 (32%), Gaps = 21/138 (15%)
Query: 147 PLATTASP----SAPRTPAADALASQAKLGRTGLGPIPGEAKERGARAPQKQAAPPPQSY 202
P T P S R PA A+ S G T GP+ G A + G P + P
Sbjct: 1068 PAPTIGEPAPETSLERAPAPSAVVSSRNGGETAPGPL-GPAPKNGTLEPGTERRAPETGG 1126
Query: 203 PCRVWEKFQAALQRAAGGIAAKSTTEERAGPRG---------VRTVRGQPPARPFSFFAV 253
R L +GG A T G G V R QPP P +
Sbjct: 1127 APRA--PGAGRLDLGSGGRAPVGTGTAPGGGPGSGVDAKAGWVDNTRPQPPPPP-----L 1179
Query: 254 AKLPQGRKRRQRRRPAAA 271
P+ + RR P A
Sbjct: 1180 PPPPEAQPRRLEPAPPRA 1197
>gi|82546845 breakpoint cluster region isoform 2 [Homo sapiens]
Length = 1227
Score = 38.5 bits (88), Expect = 0.011
Identities = 34/97 (35%), Positives = 45/97 (46%), Gaps = 13/97 (13%)
Query: 290 RGGTGAEPGVTSPRGLRALLRNAGSGAAPPPP-------PAGETRASPGRAPRAAFVRSL 342
R A G + PR + + A + A PPP P GE SPG+A R R
Sbjct: 78 RRAAQAPDGASEPRASASRPQPAPADGADPPPAEEPEARPDGE--GSPGKA-RPGTARRP 134
Query: 343 GPAASRCSEGASEKGEPAQLAALFQNSEFERREFGKP 379
G AAS + ++G PA +AAL N E R+ G+P
Sbjct: 135 GAAASGERD---DRGPPASVAALRSNFERIRKGHGQP 168
>gi|82546843 breakpoint cluster region isoform 1 [Homo sapiens]
Length = 1271
Score = 38.5 bits (88), Expect = 0.011
Identities = 34/97 (35%), Positives = 45/97 (46%), Gaps = 13/97 (13%)
Query: 290 RGGTGAEPGVTSPRGLRALLRNAGSGAAPPPP-------PAGETRASPGRAPRAAFVRSL 342
R A G + PR + + A + A PPP P GE SPG+A R R
Sbjct: 78 RRAAQAPDGASEPRASASRPQPAPADGADPPPAEEPEARPDGE--GSPGKA-RPGTARRP 134
Query: 343 GPAASRCSEGASEKGEPAQLAALFQNSEFERREFGKP 379
G AAS + ++G PA +AAL N E R+ G+P
Sbjct: 135 GAAASGERD---DRGPPASVAALRSNFERIRKGHGQP 168
>gi|239748337 PREDICTED: hypothetical protein XP_002346632 [Homo
sapiens]
Length = 189
Score = 38.5 bits (88), Expect = 0.011
Identities = 54/192 (28%), Positives = 74/192 (38%), Gaps = 26/192 (13%)
Query: 175 GLGPIPGEAKERGARAPQKQA----APPPQSYPCRVWEKFQAALQRAAGGIAAKSTTEER 230
G GP+ KE RAP++ APPP ++ RVW ++A A G A++ R
Sbjct: 4 GAGPVYAGFKE--VRAPRRHVMEGPAPPPLAWG-RVWAAAESA-PTAGAGFQAETGPRRR 59
Query: 231 AGPRGV---RTVRGQPPARPFSF------FAVAKLPQGRKRRQR------RRPAAAAALH 275
GV RT R PAR V P GR R +PA+ A+
Sbjct: 60 PFLPGVAHPRTHRQTGPARVTRSAKAGYGLRVGSGPYGRPRGNAGQEKVWEKPASEASAS 119
Query: 276 ARRRLLLLVKSYFARGGTGAEPGVTSPRGLRALLRNAGSGAAPPPPPAGETRASPGRAPR 335
R L +S G G P +GL A + A P G + PG P
Sbjct: 120 GRPPELAPARS---GAGQGRRPNGGDRQGLGAGRDKHTTDGAGPGEGTGPKKLLPGPRPA 176
Query: 336 AAFVRSLGPAAS 347
+++R AA+
Sbjct: 177 LSYLRRREGAAA 188
>gi|4502523 calcium channel, voltage-dependent, N type, alpha 1B
subunit [Homo sapiens]
Length = 2339
Score = 38.5 bits (88), Expect = 0.011
Identities = 58/233 (24%), Positives = 84/233 (36%), Gaps = 39/233 (16%)
Query: 170 KLGRTGL-GPIPGEAKERGARAPQKQAAPPPQSYPCRVWEKFQAA-------LQRAAGGI 221
+LGR G GP+ G+A+ A AP+ PP + + R +K AA +A G
Sbjct: 820 ELGRDGARGPVGGKARPEAAEAPEG-VDPPRRHHRHRDKDKTPAAGDQDRAEAPKAESGE 878
Query: 222 AA---------KSTTEERAGPRGVRTVRGQPPARPFSFFAVAKLPQGRKRRQRRRPAAAA 272
+S ++E AGP R+ RG+ P P+G +R RR A
Sbjct: 879 PGAREERPRPHRSHSKEAAGPPEARSERGRGPG-----------PEGGRRHHRRGSPEEA 927
Query: 273 ALHARRRLLLLVKSYFARGGTGAEPGVTSPRGLRALLRNAGSGAAPPPPPAGETRASPGR 332
A RR + A +G R G A P +GE A R
Sbjct: 928 AEREPRR-------HRAHRHQDPSKECAGAKGERRARHRGGPRAGPREAESGEEPARRHR 980
Query: 333 APRAAFVRSLGPAASRCSEGASEKGEPAQLAALFQNSEFERREFGKP-CDQTT 384
A A + A+EK A++ + E + +P CD T
Sbjct: 981 ARHKAQPAHEAVEKETTEKEATEK--EAEIVEADKEKELRNHQPREPHCDLET 1031
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 38.5 bits (88), Expect = 0.011
Identities = 47/194 (24%), Positives = 65/194 (33%), Gaps = 33/194 (17%)
Query: 168 QAKLGRTGLGPIPGEAKERGARAPQKQAAPPPQSYPCRVWEKFQAALQRAAGGIAAKSTT 227
+ +G G+ G E G + P PP R A G
Sbjct: 1026 KGSMGHPGMPGGMGTPGEPGPQGPPGSRGPPGM---------------RGAKGRRGPRGP 1070
Query: 228 EERAGPRGVRTVRGQPPARPFSFFAVAKLPQGRKRRQRRRPAAAAALHARRRLLLLVKSY 287
+ AG +G R ++G P PQGR R ++ A H R +
Sbjct: 1071 DGPAGEQGSRGLKGPPG------------PQGRPGRPGQQGVAGERGHLGSRGFPGIPGP 1118
Query: 288 FARGGTGAEPGVTSPRGLRALLRNAGS-GAAPPPPPAGETRASPGRAPRAAFVRSLGPAA 346
GT PG P+G + + G G PP GE PG A LGP
Sbjct: 1119 SGPPGTKGLPGEPGPQGPQGPIGPPGEMGPKGPPGAVGE----PGLPGEAGMKGDLGPLG 1174
Query: 347 SRCSEG-ASEKGEP 359
+ +G ++GEP
Sbjct: 1175 TPGEQGLIGQRGEP 1188
>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
Length = 1312
Score = 38.1 bits (87), Expect = 0.015
Identities = 47/180 (26%), Positives = 70/180 (38%), Gaps = 12/180 (6%)
Query: 153 SPSAPRTPAADALASQAKLGRTGLGPIPGEAKERGARAPQKQAAPPPQSYPCRVWE-KFQ 211
SP+ PAA A K R GEAKE + + Q APP + P W+ K
Sbjct: 500 SPAPAPAPAAAAGPPTRKKSRRERKR-SGEAKEAASSSSGTQPAPPAPASP---WDSKKH 555
Query: 212 AALQRAAGGIAAKSTTEERAGPRGVRTVRGQPPARPFSFFAVAKLPQGRKRRQRRR---- 267
+ R G A+ S R+ R + + + KRR+RRR
Sbjct: 556 RSRDRKPGSHASSSARRRSRSRSRSRSTRRRSRSTDRRRGGSRRSRSREKRRRRRRSASP 615
Query: 268 -PAAAAALHARRRLLLLVKSYFARGGTGAEPGVTSPRGLRALLRNAGSGAAPPPPPAGET 326
PA +++ +RR + GG+ + + RG + + AP PPP+G T
Sbjct: 616 PPATSSSSSSRRERHR--GKHRDGGGSKKKKKRSRSRGEKRSGDGSEKAPAPAPPPSGST 673
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.131 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,683,315
Number of Sequences: 37866
Number of extensions: 1023411
Number of successful extensions: 8896
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 439
Number of HSP's that attempted gapping in prelim test: 7724
Number of HSP's gapped (non-prelim): 1490
length of query: 414
length of database: 18,247,518
effective HSP length: 105
effective length of query: 309
effective length of database: 14,271,588
effective search space: 4409920692
effective search space used: 4409920692
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.