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Search of human proteins with 239754083
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239754083 PREDICTED: hypothetical protein XP_002345877 [Homo
sapiens]
(110 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754083 PREDICTED: hypothetical protein XP_002345877 [Homo ... 222 4e-59
gi|239748665 PREDICTED: hypothetical protein [Homo sapiens] 212 5e-56
gi|239742690 PREDICTED: hypothetical protein [Homo sapiens] 212 5e-56
gi|10863899 numb homolog (Drosophila)-like [Homo sapiens] 34 0.029
gi|61966747 hypothetical protein LOC389151 [Homo sapiens] 33 0.064
gi|89191868 von Willebrand factor preproprotein [Homo sapiens] 32 0.14
gi|239743839 PREDICTED: hypothetical protein XP_002342967 [Homo ... 31 0.24
gi|46359075 zinc finger protein 423 [Homo sapiens] 30 0.54
gi|157739945 tetratricopeptide repeat, ankyrin repeat and coiled... 30 0.54
gi|115298682 HBxAg transactivated protein 2 [Homo sapiens] 29 0.93
gi|23503293 solute carrier family 16, member 11 [Homo sapiens] 28 1.2
gi|40316837 ATPase, class I, type 8B, member 2 isoform a [Homo s... 28 1.2
gi|62953127 polyhomeotic 1-like [Homo sapiens] 28 1.6
gi|162138911 IQ motif and Sec7 domain 2 isoform1 [Homo sapiens] 28 1.6
gi|221316689 cytidine triphosphate synthase II [Homo sapiens] 28 1.6
gi|28559085 cytidine triphosphate synthase II [Homo sapiens] 28 1.6
gi|28559083 cytidine triphosphate synthase II [Homo sapiens] 28 1.6
gi|50959191 rho guanine nucleotide exchange factor 5 [Homo sapiens] 28 1.6
gi|63082035 hypothetical protein LOC51149 isoform 2 [Homo sapiens] 28 1.6
gi|63082033 hypothetical protein LOC51149 isoform 1 [Homo sapiens] 28 1.6
gi|154146199 sal-like 3 [Homo sapiens] 27 2.7
gi|4758416 golgi-specific brefeldin A resistant guanine nucleoti... 27 2.7
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 27 2.7
gi|123173757 RAVER1 [Homo sapiens] 27 3.5
gi|4758392 forkhead box D1 [Homo sapiens] 27 3.5
gi|22547159 tetratricopeptide repeat domain 19 [Homo sapiens] 27 3.5
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 27 4.6
gi|116235472 SH3-domain GRB2-like (endophilin) interacting prote... 27 4.6
gi|21536320 heterogeneous nuclear ribonucleoprotein U-like 1 iso... 27 4.6
gi|21536326 heterogeneous nuclear ribonucleoprotein U-like 1 iso... 27 4.6
>gi|239754083 PREDICTED: hypothetical protein XP_002345877 [Homo
sapiens]
Length = 110
Score = 222 bits (566), Expect = 4e-59
Identities = 110/110 (100%), Positives = 110/110 (100%)
Query: 1 MELLAPLRGPGLQPWLRVKRVFFLNETASFVRSFVRSGSNAAEKQQTSVRALALFAPDPD 60
MELLAPLRGPGLQPWLRVKRVFFLNETASFVRSFVRSGSNAAEKQQTSVRALALFAPDPD
Sbjct: 1 MELLAPLRGPGLQPWLRVKRVFFLNETASFVRSFVRSGSNAAEKQQTSVRALALFAPDPD 60
Query: 61 VPPQRSEVPPAQGSLLSPAQVGLFLPRRETPIPFVTSNKDIPAASPRFGC 110
VPPQRSEVPPAQGSLLSPAQVGLFLPRRETPIPFVTSNKDIPAASPRFGC
Sbjct: 61 VPPQRSEVPPAQGSLLSPAQVGLFLPRRETPIPFVTSNKDIPAASPRFGC 110
>gi|239748665 PREDICTED: hypothetical protein [Homo sapiens]
Length = 223
Score = 212 bits (540), Expect = 5e-56
Identities = 106/106 (100%), Positives = 106/106 (100%)
Query: 1 MELLAPLRGPGLQPWLRVKRVFFLNETASFVRSFVRSGSNAAEKQQTSVRALALFAPDPD 60
MELLAPLRGPGLQPWLRVKRVFFLNETASFVRSFVRSGSNAAEKQQTSVRALALFAPDPD
Sbjct: 1 MELLAPLRGPGLQPWLRVKRVFFLNETASFVRSFVRSGSNAAEKQQTSVRALALFAPDPD 60
Query: 61 VPPQRSEVPPAQGSLLSPAQVGLFLPRRETPIPFVTSNKDIPAASP 106
VPPQRSEVPPAQGSLLSPAQVGLFLPRRETPIPFVTSNKDIPAASP
Sbjct: 61 VPPQRSEVPPAQGSLLSPAQVGLFLPRRETPIPFVTSNKDIPAASP 106
>gi|239742690 PREDICTED: hypothetical protein [Homo sapiens]
Length = 223
Score = 212 bits (540), Expect = 5e-56
Identities = 106/106 (100%), Positives = 106/106 (100%)
Query: 1 MELLAPLRGPGLQPWLRVKRVFFLNETASFVRSFVRSGSNAAEKQQTSVRALALFAPDPD 60
MELLAPLRGPGLQPWLRVKRVFFLNETASFVRSFVRSGSNAAEKQQTSVRALALFAPDPD
Sbjct: 1 MELLAPLRGPGLQPWLRVKRVFFLNETASFVRSFVRSGSNAAEKQQTSVRALALFAPDPD 60
Query: 61 VPPQRSEVPPAQGSLLSPAQVGLFLPRRETPIPFVTSNKDIPAASP 106
VPPQRSEVPPAQGSLLSPAQVGLFLPRRETPIPFVTSNKDIPAASP
Sbjct: 61 VPPQRSEVPPAQGSLLSPAQVGLFLPRRETPIPFVTSNKDIPAASP 106
>gi|10863899 numb homolog (Drosophila)-like [Homo sapiens]
Length = 609
Score = 33.9 bits (76), Expect = 0.029
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 43 EKQQTSVRALALFAPDPDVPPQRSEVPPAQGSL-LSPAQVGLFLPRRETPIPFV 95
++QQ + A AP P +PP P G +PAQV +FLP PFV
Sbjct: 438 QQQQQQQQQAASVAPVPTMPPALQPFPAPVGPFDAAPAQVAVFLPPPHMQPPFV 491
>gi|61966747 hypothetical protein LOC389151 [Homo sapiens]
Length = 265
Score = 32.7 bits (73), Expect = 0.064
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 58 DPDVPPQRSEVPPAQGSLLSPAQVGLFLPRRETPIP 93
DP+ P R + P + L P+ +F+P RE PIP
Sbjct: 160 DPEFPELRMDSPTGSAAGLYPSSRSMFIPYREGPIP 195
>gi|89191868 von Willebrand factor preproprotein [Homo sapiens]
Length = 2813
Score = 31.6 bits (70), Expect = 0.14
Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 11/97 (11%)
Query: 11 GLQPWLRVKRVFFLNETASFVRSFVRSGSNAAEKQQTSVRA----LALFAPDPDVPPQRS 66
G+ P +K++ + + A ++FV S + E+Q+ + + LA AP P +PP +
Sbjct: 1415 GIGPHANLKQIRLIEKQAPENKAFVLSSVDELEQQRDEIVSYLCDLAPEAPPPTLPPDMA 1474
Query: 67 EVPPAQGSLLSPAQVGLFLPRRET---PIPFVTSNKD 100
+V G LL + +G P+R + + FV D
Sbjct: 1475 QVTVGPG-LLGVSTLG---PKRNSMVLDVAFVLEGSD 1507
>gi|239743839 PREDICTED: hypothetical protein XP_002342967 [Homo
sapiens]
Length = 761
Score = 30.8 bits (68), Expect = 0.24
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 37 SGSNAAEKQQTSVRALALFAPDPDVPPQRSEVPPAQGSLLSPAQVGLFLPRRETPIP 93
SGS A ++ A A F+P P + P R +PP S L P + L +P R +P
Sbjct: 111 SGSFALRRRGFLFSAAAAFSPPPRLFPHRGFLPPPAASGLCPPR--LLIPYRRGFLP 165
Score = 29.6 bits (65), Expect = 0.54
Identities = 25/85 (29%), Positives = 31/85 (36%), Gaps = 10/85 (11%)
Query: 14 PWLRVKRVFFLNETASFVRSFVRSGSNAAEKQQTSVRALA------LFAPDPD----VPP 63
PWL +R F A+ +F + A + A LFAP P PP
Sbjct: 234 PWLSARRGFLPPAAAAAAAAFCSPTAAAFSPPPPWLFVAATFCSTRLFAPPPPRLFAPPP 293
Query: 64 QRSEVPPAQGSLLSPAQVGLFLPRR 88
R PP L P + G LP R
Sbjct: 294 PRLFAPPPPRLLFPPCRRGFLLPYR 318
>gi|46359075 zinc finger protein 423 [Homo sapiens]
Length = 1284
Score = 29.6 bits (65), Expect = 0.54
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 68 VPPAQGSLLSPAQV-GLFLPRRETPIPFVTSNKDIPAASPRFGC 110
VPP PA + G+ L E P S D+ A+ P +GC
Sbjct: 845 VPPMATKKAEPADLQGMLLKNPEAPNSHEASEDDVDASEPMYGC 888
>gi|157739945 tetratricopeptide repeat, ankyrin repeat and coiled-coil
containing 2 [Homo sapiens]
Length = 1990
Score = 29.6 bits (65), Expect = 0.54
Identities = 29/88 (32%), Positives = 38/88 (43%), Gaps = 12/88 (13%)
Query: 26 ETASFVRSFVRSGSNAAEKQQTSVRAL--------ALFAPDPDVPPQRSEVPPAQGSLLS 77
E+ S RS +SGS +Q+TSV L + A P PQ P QG L
Sbjct: 1549 ESMSVYRS--QSGSPVRYQQETSVSQLPGRPKSPLSKMAQRPYQMPQLPVAVPQQGLRLQ 1606
Query: 78 PAQVGLFLPRRETPIPFVTSNKDIPAAS 105
PA+ + R P P V S+ IP +
Sbjct: 1607 PAKAQIV--RSNQPSPAVHSSTVIPTGA 1632
>gi|115298682 HBxAg transactivated protein 2 [Homo sapiens]
Length = 2817
Score = 28.9 bits (63), Expect = 0.93
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 42 AEKQQTSVRALALFAPDPDVPPQRSEVPPAQGSLLSPAQVGLFLPRRETPIPFVTSNKDI 101
A+KQ T ++ A VPP S P S PA LP TP+P TS +
Sbjct: 1730 AKKQATGIQQAQSSA---SVPPLASAPLPPSTSASVPASTSAPLPATLTPVPASTS-APV 1785
Query: 102 PAAS 105
PA++
Sbjct: 1786 PAST 1789
>gi|23503293 solute carrier family 16, member 11 [Homo sapiens]
Length = 471
Score = 28.5 bits (62), Expect = 1.2
Identities = 30/86 (34%), Positives = 37/86 (43%), Gaps = 14/86 (16%)
Query: 4 LAPLRGPGLQPWLRVKRVFFLNETASFVRSFVRSGSNAAEKQQTSV---RAL---ALFAP 57
L L GP L +LR +ET F SF+ SGS + RAL +P
Sbjct: 386 LGGLLGPPLSGFLR-------DETGDFTASFLLSGSLILSGSFIYIGLPRALPSCGPASP 438
Query: 58 DPDVPPQRSEVPPA-QGSLLSPAQVG 82
PP+ E+ PA Q LLSP G
Sbjct: 439 PATPPPETGELLPAPQAVLLSPGGPG 464
>gi|40316837 ATPase, class I, type 8B, member 2 isoform a [Homo
sapiens]
Length = 1223
Score = 28.5 bits (62), Expect = 1.2
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 47 TSVRALALFAPDPDVPPQRSEVPPAQGSLLSPAQVGLFLPRRE 89
TS+ LA+ D DVP QRS P L P Q+ L +RE
Sbjct: 947 TSLPVLAMGVFDQDVPEQRSMEYP---KLYEPGQLNLLFNKRE 986
>gi|62953127 polyhomeotic 1-like [Homo sapiens]
Length = 1004
Score = 28.1 bits (61), Expect = 1.6
Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 11/78 (14%)
Query: 43 EKQQTSVRALALFAPDPDVPPQRSEVPPAQGSLLSPAQV--------GLFLP---RRETP 91
++QQ +A L AP P P +VPP+Q + V L LP + P
Sbjct: 434 QQQQQQPQATTLTAPQPPQVPPTQQVPPSQSQQQAQTLVVQPMLQSSPLSLPPDAAPKPP 493
Query: 92 IPFVTSNKDIPAASPRFG 109
IP + P P+ G
Sbjct: 494 IPIQSKPPVAPIKPPQLG 511
>gi|162138911 IQ motif and Sec7 domain 2 isoform1 [Homo sapiens]
Length = 1488
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 14/54 (25%)
Query: 56 APDPDVPPQRSEVPPAQGSLLSPAQVGLFLPRRETPIPFVTSNKDIPAASPRFG 109
AP P +PPQ+ +PP P++ P+P + S PA++P G
Sbjct: 1278 APPPYLPPQQPSLPPP--------------PQQPPPLPQLGSIPPPPASAPPVG 1317
>gi|221316689 cytidine triphosphate synthase II [Homo sapiens]
Length = 586
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/53 (33%), Positives = 22/53 (41%)
Query: 17 RVKRVFFLNETASFVRSFVRSGSNAAEKQQTSVRALALFAPDPDVPPQRSEVP 69
+ KR F N S V +G + Q SVRAL PD+ RS P
Sbjct: 169 KAKRENFCNIHVSLVPQLSATGEQKTKPTQNSVRALRGLGLSPDLIVCRSSTP 221
>gi|28559085 cytidine triphosphate synthase II [Homo sapiens]
Length = 586
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/53 (33%), Positives = 22/53 (41%)
Query: 17 RVKRVFFLNETASFVRSFVRSGSNAAEKQQTSVRALALFAPDPDVPPQRSEVP 69
+ KR F N S V +G + Q SVRAL PD+ RS P
Sbjct: 169 KAKRENFCNIHVSLVPQLSATGEQKTKPTQNSVRALRGLGLSPDLIVCRSSTP 221
>gi|28559083 cytidine triphosphate synthase II [Homo sapiens]
Length = 586
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/53 (33%), Positives = 22/53 (41%)
Query: 17 RVKRVFFLNETASFVRSFVRSGSNAAEKQQTSVRALALFAPDPDVPPQRSEVP 69
+ KR F N S V +G + Q SVRAL PD+ RS P
Sbjct: 169 KAKRENFCNIHVSLVPQLSATGEQKTKPTQNSVRALRGLGLSPDLIVCRSSTP 221
>gi|50959191 rho guanine nucleotide exchange factor 5 [Homo sapiens]
Length = 1597
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 10/66 (15%)
Query: 6 PLRGPGLQPWLRVKRVFFLNETASFVRSFVRSGSNAAEKQQTSVRALALFAPDPDVPPQR 65
P P +QPW+ F E+ ++ GS+ + VR + P P PPQR
Sbjct: 683 PSSPPSIQPWVSPHNPAFATESPAY-------GSSPSFVSMEDVR---IHEPLPPPPPQR 732
Query: 66 SEVPPA 71
+ P+
Sbjct: 733 RDTHPS 738
>gi|63082035 hypothetical protein LOC51149 isoform 2 [Homo sapiens]
Length = 288
Score = 28.1 bits (61), Expect = 1.6
Identities = 33/102 (32%), Positives = 45/102 (44%), Gaps = 16/102 (15%)
Query: 7 LRGPGLQPWLRVKRVFFLNETASFVRSFV---RSGSNAAEKQQTSVRALALFAPDPDVPP 63
LRGPG + W +++V T+S FV R S+ +Q S++ P P P
Sbjct: 153 LRGPGKELWSPIQQV---TATSSKWAQFVLPPRKSSHVDSEQPRSLQR----DPRPAGPA 205
Query: 64 QRSE-VPPAQGSL--LSPAQVGLFLPRRETPIPFVTSNKDIP 102
Q + P AQ S LS + LPR P VTS + P
Sbjct: 206 QAKQGTPRAQASREGLSRPTAAVQLPRATHP---VTSGSERP 244
>gi|63082033 hypothetical protein LOC51149 isoform 1 [Homo sapiens]
Length = 343
Score = 28.1 bits (61), Expect = 1.6
Identities = 33/102 (32%), Positives = 45/102 (44%), Gaps = 16/102 (15%)
Query: 7 LRGPGLQPWLRVKRVFFLNETASFVRSFV---RSGSNAAEKQQTSVRALALFAPDPDVPP 63
LRGPG + W +++V T+S FV R S+ +Q S++ P P P
Sbjct: 208 LRGPGKELWSPIQQV---TATSSKWAQFVLPPRKSSHVDSEQPRSLQR----DPRPAGPA 260
Query: 64 QRSE-VPPAQGSL--LSPAQVGLFLPRRETPIPFVTSNKDIP 102
Q + P AQ S LS + LPR P VTS + P
Sbjct: 261 QAKQGTPRAQASREGLSRPTAAVQLPRATHP---VTSGSERP 299
>gi|154146199 sal-like 3 [Homo sapiens]
Length = 1300
Score = 27.3 bits (59), Expect = 2.7
Identities = 14/40 (35%), Positives = 16/40 (40%)
Query: 70 PAQGSLLSPAQVGLFLPRRETPIPFVTSNKDIPAASPRFG 109
P+ G GL P IP T D PAA+P G
Sbjct: 909 PSNGESFRSKSPGLGAPEEPQEIPLKTERPDSPAAAPGSG 948
>gi|4758416 golgi-specific brefeldin A resistant guanine nucleotide
exchange factor 1 [Homo sapiens]
Length = 1859
Score = 27.3 bits (59), Expect = 2.7
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 56 APDPDVPPQRSEVPPAQGSLLSPAQVGLFLPRRETPIPFVTSNKDIPAASP 106
+P PD PP ++ P L SP QVG+ +P + + I A SP
Sbjct: 1794 SPTPDGPPPLAQPPLILQPLASPLQVGV----PPMTLPIILNPALIEATSP 1840
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 27.3 bits (59), Expect = 2.7
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 36 RSGSNAAEKQQTSVRALALFAPDPDVPPQRSEVPPAQGSLLSP 78
RS S+ KQ++ + + P +S PP QGS+ SP
Sbjct: 816 RSSSSPPPKQKSKTPSRQSHSSSSPHPKVKSGTPPRQGSITSP 858
>gi|123173757 RAVER1 [Homo sapiens]
Length = 756
Score = 26.9 bits (58), Expect = 3.5
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 59 PDVPPQRSEVPPAQGSLLSPA 79
P++PP+R + PP S+L PA
Sbjct: 443 PELPPRRGKPPPLLPSVLGPA 463
>gi|4758392 forkhead box D1 [Homo sapiens]
Length = 465
Score = 26.9 bits (58), Expect = 3.5
Identities = 17/47 (36%), Positives = 20/47 (42%)
Query: 17 RVKRVFFLNETASFVRSFVRSGSNAAEKQQTSVRALALFAPDPDVPP 63
R KR L A+ S + G+ AA A ALF P P PP
Sbjct: 220 RFKRQPLLPPNAAAAESLLLRGAGAAGGAGDPAAAAALFPPAPPPPP 266
>gi|22547159 tetratricopeptide repeat domain 19 [Homo sapiens]
Length = 501
Score = 26.9 bits (58), Expect = 3.5
Identities = 21/62 (33%), Positives = 25/62 (40%), Gaps = 9/62 (14%)
Query: 42 AEKQQTSVRALALFAPDPDVPPQRSEVPPAQGSLLSPAQVGLFLPRRETPIPFVTSNKDI 101
A+ TSV A P PP RS PP + L P+ RR T P +D
Sbjct: 2 AQPHTTSVPYFARSPAPP--PPSRSGAPPQPPATLRPS-------RRRTRPPRPADRRDA 52
Query: 102 PA 103
PA
Sbjct: 53 PA 54
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 26.6 bits (57), Expect = 4.6
Identities = 28/94 (29%), Positives = 38/94 (40%), Gaps = 20/94 (21%)
Query: 24 LNETASFVRSFVRSGSNA-------AEKQQTSVRALALFAPDPDVPPQRSEVPPAQGSLL 76
L+ +A+ + S RSG +A A Q + L P P V P R + PA G L
Sbjct: 242 LSSSATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRP-PQVTPPRKDAAPALGPLS 300
Query: 77 SPAQVGLFLPRRETPIPFVTSNKDIP----AASP 106
S TP P T + +P AA+P
Sbjct: 301 SSPLA--------TPSPSGTKARPVPPPDNAATP 326
>gi|116235472 SH3-domain GRB2-like (endophilin) interacting protein
1 [Homo sapiens]
Length = 828
Score = 26.6 bits (57), Expect = 4.6
Identities = 27/75 (36%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query: 40 NAA--EKQQTSVRALALFAPDPDVPPQRSEVPPAQGSLLSPAQVGLFLPRRETPIPFVTS 97
NAA ++ + S+ +AL P+RS P A LS +V PRR TP P + S
Sbjct: 132 NAATVDELKASIGNIALSPSPVRKSPRRS--PGAIKRNLSSEEVAR--PRRSTPTPELIS 187
Query: 98 NK---DIPAASPRFG 109
K D A +P FG
Sbjct: 188 KKPPDDTTALAPLFG 202
>gi|21536320 heterogeneous nuclear ribonucleoprotein U-like 1
isoform d [Homo sapiens]
Length = 756
Score = 26.6 bits (57), Expect = 4.6
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 6/70 (8%)
Query: 36 RSGSNAAEKQQTSVRALALFAPDPDVPPQRSEVPPAQGSLLSPAQVGLFLPRRETPIPFV 95
R N A +QQ + P P PPQ+ PP+ +P + + + IP
Sbjct: 585 RGSYNRAPQQQPPPQQ----PPPPQPPPQQPPPPPSYSPARNPPGASTY--NKNSNIPGS 638
Query: 96 TSNKDIPAAS 105
++N P S
Sbjct: 639 SANTSTPTVS 648
>gi|21536326 heterogeneous nuclear ribonucleoprotein U-like 1
isoform a [Homo sapiens]
Length = 856
Score = 26.6 bits (57), Expect = 4.6
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 6/70 (8%)
Query: 36 RSGSNAAEKQQTSVRALALFAPDPDVPPQRSEVPPAQGSLLSPAQVGLFLPRRETPIPFV 95
R N A +QQ + P P PPQ+ PP+ +P + + + IP
Sbjct: 685 RGSYNRAPQQQPPPQQ----PPPPQPPPQQPPPPPSYSPARNPPGASTY--NKNSNIPGS 738
Query: 96 TSNKDIPAAS 105
++N P S
Sbjct: 739 SANTSTPTVS 748
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.136 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,715,506
Number of Sequences: 37866
Number of extensions: 216687
Number of successful extensions: 1134
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1088
Number of HSP's gapped (non-prelim): 74
length of query: 110
length of database: 18,247,518
effective HSP length: 80
effective length of query: 30
effective length of database: 15,218,238
effective search space: 456547140
effective search space used: 456547140
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.