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Search of human proteins with 239754062
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239754062 PREDICTED: orthopedia homeobox [Homo sapiens]
(325 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754062 PREDICTED: orthopedia homeobox [Homo sapiens] 658 0.0
gi|14149760 orthopedia homeobox [Homo sapiens] 658 0.0
gi|24497589 aristaless related homeobox [Homo sapiens] 123 3e-28
gi|46249382 paired-like homeobox 2a [Homo sapiens] 120 2e-27
gi|126116581 retina and anterior neural fold homeobox [Homo sapi... 110 2e-24
gi|154813201 cartilage paired-class homeoprotein 1 [Homo sapiens] 104 1e-22
gi|55743092 aristaless-like homeobox 4 [Homo sapiens] 103 2e-22
gi|11056038 visual system homeobox 1 isoform a [Homo sapiens] 103 2e-22
gi|12707580 paired-like homeobox 2b [Homo sapiens] 102 4e-22
gi|89145413 short stature homeobox 2 isoform a [Homo sapiens] 102 5e-22
gi|152963644 paired-like homeodomain transcription factor 1 [Hom... 101 1e-21
gi|20070107 orthodenticle homeobox 1 [Homo sapiens] 101 1e-21
gi|7706659 paired related homeobox 2 [Homo sapiens] 99 4e-21
gi|122937321 UNC homeobox [Homo sapiens] 99 5e-21
gi|4505619 paired box 7 isoform 1 [Homo sapiens] 99 7e-21
gi|7524359 paired box 7 isoform 2 [Homo sapiens] 99 7e-21
gi|207029223 paired box 7 isoform 3 [Homo sapiens] 99 7e-21
gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Ho... 99 7e-21
gi|122937484 dorsal root ganglia homeobox [Homo sapiens] 98 1e-20
gi|14249388 retina and anterior neural fold homeobox 2 [Homo sap... 97 1e-20
gi|189083681 paired box gene 6 isoform a [Homo sapiens] 96 3e-20
gi|4580424 paired box gene 6 isoform b [Homo sapiens] 96 3e-20
gi|4505615 paired box gene 6 isoform a [Homo sapiens] 96 3e-20
gi|113204604 aristaless-like homeobox 3 [Homo sapiens] 95 1e-19
gi|188219638 paired box 3 isoform PAX3i [Homo sapiens] 94 2e-19
gi|31563348 paired box 3 isoform PAX3g [Homo sapiens] 94 2e-19
gi|31563346 paired box 3 isoform PAX3h [Homo sapiens] 94 2e-19
gi|31563344 paired box 3 isoform PAX3e [Homo sapiens] 94 2e-19
gi|31563342 paired box 3 isoform PAX3d [Homo sapiens] 94 2e-19
gi|31563340 paired box 3 isoform PAX3 [Homo sapiens] 94 2e-19
>gi|239754062 PREDICTED: orthopedia homeobox [Homo sapiens]
Length = 325
Score = 658 bits (1698), Expect = 0.0
Identities = 325/325 (100%), Positives = 325/325 (100%)
Query: 1 MLSHADLLDARLGMKDAAELLGHREAVKCRLGVGGSDPGGHPGDLAPNSDPVEGATLLPG 60
MLSHADLLDARLGMKDAAELLGHREAVKCRLGVGGSDPGGHPGDLAPNSDPVEGATLLPG
Sbjct: 1 MLSHADLLDARLGMKDAAELLGHREAVKCRLGVGGSDPGGHPGDLAPNSDPVEGATLLPG 60
Query: 61 EDITTVGSTPASLAVSAKDPDKQPGPQGGPNPSQAGQQQGQQKQKRHRTRFTPAQLNELE 120
EDITTVGSTPASLAVSAKDPDKQPGPQGGPNPSQAGQQQGQQKQKRHRTRFTPAQLNELE
Sbjct: 61 EDITTVGSTPASLAVSAKDPDKQPGPQGGPNPSQAGQQQGQQKQKRHRTRFTPAQLNELE 120
Query: 121 RSFAKTHYPDIFMREELALRIGLTESRVQVWFQNRRAKWKKRKKTTNVFRAPGTLLPTPG 180
RSFAKTHYPDIFMREELALRIGLTESRVQVWFQNRRAKWKKRKKTTNVFRAPGTLLPTPG
Sbjct: 121 RSFAKTHYPDIFMREELALRIGLTESRVQVWFQNRRAKWKKRKKTTNVFRAPGTLLPTPG 180
Query: 181 LPQFPSAAAAAAAAMGDSLCSFHANDTRWAAAAMPGVSQLPLPPALGRQQAMAQSLSQCS 240
LPQFPSAAAAAAAAMGDSLCSFHANDTRWAAAAMPGVSQLPLPPALGRQQAMAQSLSQCS
Sbjct: 181 LPQFPSAAAAAAAAMGDSLCSFHANDTRWAAAAMPGVSQLPLPPALGRQQAMAQSLSQCS 240
Query: 241 LAAGPPPNSMGLSNSLAGSNGAGLQSHLYQPAFPGMVPASLPGPSNVSGSPQLCSSPDSS 300
LAAGPPPNSMGLSNSLAGSNGAGLQSHLYQPAFPGMVPASLPGPSNVSGSPQLCSSPDSS
Sbjct: 241 LAAGPPPNSMGLSNSLAGSNGAGLQSHLYQPAFPGMVPASLPGPSNVSGSPQLCSSPDSS 300
Query: 301 DVWRGTSIASLRRKALEHTVSMSFT 325
DVWRGTSIASLRRKALEHTVSMSFT
Sbjct: 301 DVWRGTSIASLRRKALEHTVSMSFT 325
>gi|14149760 orthopedia homeobox [Homo sapiens]
Length = 325
Score = 658 bits (1698), Expect = 0.0
Identities = 325/325 (100%), Positives = 325/325 (100%)
Query: 1 MLSHADLLDARLGMKDAAELLGHREAVKCRLGVGGSDPGGHPGDLAPNSDPVEGATLLPG 60
MLSHADLLDARLGMKDAAELLGHREAVKCRLGVGGSDPGGHPGDLAPNSDPVEGATLLPG
Sbjct: 1 MLSHADLLDARLGMKDAAELLGHREAVKCRLGVGGSDPGGHPGDLAPNSDPVEGATLLPG 60
Query: 61 EDITTVGSTPASLAVSAKDPDKQPGPQGGPNPSQAGQQQGQQKQKRHRTRFTPAQLNELE 120
EDITTVGSTPASLAVSAKDPDKQPGPQGGPNPSQAGQQQGQQKQKRHRTRFTPAQLNELE
Sbjct: 61 EDITTVGSTPASLAVSAKDPDKQPGPQGGPNPSQAGQQQGQQKQKRHRTRFTPAQLNELE 120
Query: 121 RSFAKTHYPDIFMREELALRIGLTESRVQVWFQNRRAKWKKRKKTTNVFRAPGTLLPTPG 180
RSFAKTHYPDIFMREELALRIGLTESRVQVWFQNRRAKWKKRKKTTNVFRAPGTLLPTPG
Sbjct: 121 RSFAKTHYPDIFMREELALRIGLTESRVQVWFQNRRAKWKKRKKTTNVFRAPGTLLPTPG 180
Query: 181 LPQFPSAAAAAAAAMGDSLCSFHANDTRWAAAAMPGVSQLPLPPALGRQQAMAQSLSQCS 240
LPQFPSAAAAAAAAMGDSLCSFHANDTRWAAAAMPGVSQLPLPPALGRQQAMAQSLSQCS
Sbjct: 181 LPQFPSAAAAAAAAMGDSLCSFHANDTRWAAAAMPGVSQLPLPPALGRQQAMAQSLSQCS 240
Query: 241 LAAGPPPNSMGLSNSLAGSNGAGLQSHLYQPAFPGMVPASLPGPSNVSGSPQLCSSPDSS 300
LAAGPPPNSMGLSNSLAGSNGAGLQSHLYQPAFPGMVPASLPGPSNVSGSPQLCSSPDSS
Sbjct: 241 LAAGPPPNSMGLSNSLAGSNGAGLQSHLYQPAFPGMVPASLPGPSNVSGSPQLCSSPDSS 300
Query: 301 DVWRGTSIASLRRKALEHTVSMSFT 325
DVWRGTSIASLRRKALEHTVSMSFT
Sbjct: 301 DVWRGTSIASLRRKALEHTVSMSFT 325
>gi|24497589 aristaless related homeobox [Homo sapiens]
Length = 562
Score = 123 bits (308), Expect = 3e-28
Identities = 105/329 (31%), Positives = 145/329 (44%), Gaps = 57/329 (17%)
Query: 16 DAAELLGHREAVKCRLGVGGSDPGGHPGDLAPNSDPVEGATLLPGEDITTVGSTPASLAV 75
DA LL +E +C + G+ +A EG L P E+ L +
Sbjct: 255 DARALL--KEPRRCPVAATGAVAAAAAAAVA-----TEGGELSPKEE----------LLL 297
Query: 76 SAKDPDKQPGPQGGPNPSQAGQQQG--QQKQKRHRTRFTPAQLNELERSFAKTHYPDIFM 133
+D + + G + + ++G ++KQ+R+RT FT QL ELER+F KTHYPD+F
Sbjct: 298 HPEDAEGKDGEDSVCLSAGSDSEEGLLKRKQRRYRTTFTSYQLEELERAFQKTHYPDVFT 357
Query: 134 REELALRIGLTESRVQVWFQNRRAKWKKRKKTTNVFRAPGTLLPTPGLPQFPSAAAAAAA 193
REELA+R+ LTE+RVQVWFQNRRAKW+KR+K PG P P P + A+
Sbjct: 358 REELAMRLDLTEARVQVWFQNRRAKWRKREKAGAQTHPPGLPFPGPLSATHPLSPYLDAS 417
Query: 194 AMGDSLCSFHANDTRWAAAAMPGVSQLP-LPPALGRQQAMAQSLSQCSLAAGPPPNSMGL 252
A D+ W AAA + P LPP G S + P +GL
Sbjct: 418 PFPP---HHPALDSAWTAAAAAAAAAFPSLPPPPG------------SASLPPSGAPLGL 462
Query: 253 SNSLAGSNGAGLQSH--LYQPAF----------------PGMVPASLPGPSNVSGSPQLC 294
S L GA + H PAF ++ P S L
Sbjct: 463 STFL----GAAVFRHPAFISPAFGRLFSTMAPLTSASTAAALLRQPTPAVEGAVASGALA 518
Query: 295 SSPDSSDVWRGTSIASLRRKALEHTVSMS 323
++ R +SIA+LR KA EH ++
Sbjct: 519 DPATAAADRRASSIAALRLKAKEHAAQLT 547
>gi|46249382 paired-like homeobox 2a [Homo sapiens]
Length = 284
Score = 120 bits (301), Expect = 2e-27
Identities = 94/266 (35%), Positives = 127/266 (47%), Gaps = 49/266 (18%)
Query: 36 SDPGGHPGDLAPNSDPVEGATLLPGEDITTVGSTPASLAVSAKDPDKQPGPQGG------ 89
S PGG P+ A G +GS+ +L D QP P
Sbjct: 28 SQPGGF------QYSPLRPAFPAAGPPCPALGSSNCALGALR---DHQPAPYSAVPYKFF 78
Query: 90 PNPSQAGQQQGQQKQKRHRTRFTPAQLNELERSFAKTHYPDIFMREELALRIGLTESRVQ 149
P PS +++ KQ+R RT FT AQL ELER FA+THYPDI+ REELAL+I LTE+RVQ
Sbjct: 79 PEPSGLHEKR---KQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQ 135
Query: 150 VWFQNRRAKWKKRKKTTNVFRAPGTLLPTPGLPQFPSAAAAAAAAMGDSLCSFHANDTRW 209
VWFQNRRAK++K+++ + AA AA A G++ CS +D++
Sbjct: 136 VWFQNRRAKFRKQERAASA----------------KGAAGAAGAKKGEARCSSEDDDSKE 179
Query: 210 AAAA--MPGVSQLPLPPALG-RQQAMAQSLSQCSLAAGPPPNS----------MGLSNSL 256
+ + + LP PPA G ++ S +L +GP P G++
Sbjct: 180 STCSPTPDSTASLPPPPAPGLASPRLSPSPLPVALGSGPGPGPGPQPLKGALWAGVAGGG 239
Query: 257 AGSNGAGLQSHL--YQPAFPGMVPAS 280
G GAG L +QPA G P S
Sbjct: 240 GGGPGAGAAELLKAWQPAESGPGPFS 265
>gi|126116581 retina and anterior neural fold homeobox [Homo
sapiens]
Length = 346
Score = 110 bits (275), Expect = 2e-24
Identities = 96/274 (35%), Positives = 130/274 (47%), Gaps = 21/274 (7%)
Query: 51 PVEGATLLPGEDITTVGSTPASLAVSAKDPDK---QPGPQGGPNPSQAG---QQQGQQKQ 104
P EG+ P A K+P + PG GP +A ++Q ++K
Sbjct: 77 PEEGSEPSPPPAPAPAPEYEAPRPYCPKEPGEARPSPGLPVGPATGEAKLSEEEQPKKKH 136
Query: 105 KRHRTRFTPAQLNELERSFAKTHYPDIFMREELALRIGLTESRVQVWFQNRRAKWKKRKK 164
+R+RT FT QL+ELER+F K+HYPD++ REELA ++ L E RVQVWFQNRRAKW++++K
Sbjct: 137 RRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEK 196
Query: 165 TTNVFRAPGTLLPTPGLPQFPSAAAAAAAAMGDSLCSFHANDTRWAAAAMPGVSQLPLPP 224
+ + L +P L S +A + +G S A A+P S L PP
Sbjct: 197 ---LEVSSMKLQDSPLLSFSRSPPSATLSPLGAGPGSGGGP----AGGALPLESWLG-PP 248
Query: 225 ALGRQQAMAQSLSQCSLAAGPPPNSMGLSNSLAGSNGAGLQSHLYQPAFPGMVPASLPGP 284
G QSL GPP S+ S + L S P PG+ P + P P
Sbjct: 249 LPGGGATALQSLP----GFGPPAQSLPASYTPPPPPPPFLNS---PPLGPGLQPLAPPPP 301
Query: 285 SNVSGSPQLCSSPDSSDVWRGTSIASLRRKALEH 318
S G P R +SIA+LR KA EH
Sbjct: 302 SYPCGPGFGDKFPLDEADPRNSSIAALRLKAKEH 335
>gi|154813201 cartilage paired-class homeoprotein 1 [Homo sapiens]
Length = 326
Score = 104 bits (259), Expect = 1e-22
Identities = 83/225 (36%), Positives = 110/225 (48%), Gaps = 34/225 (15%)
Query: 103 KQKRHRTRFTPAQLNELERSFAKTHYPDIFMREELALRIGLTESRVQVWFQNRRAKWKKR 162
K++RHRT FT QL ELE+ F KTHYPD+++RE+LALR LTE+RVQVWFQNRRAKW+KR
Sbjct: 131 KKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKR 190
Query: 163 KKTTNVFRAPGTLLPTPGLPQFPSAAAAAAAAMGDSLCSFHANDTRWAAAAMPG--VSQL 220
++ + +A T + P DS N WA A G V+
Sbjct: 191 ERYGQIQQAKSHFAATYDISVLPRT---------DSYPQIQNN--LWAGNASGGSVVTSC 239
Query: 221 PLPPALGRQQAMAQSLSQCSLAAGPPPNSMGLSNSLAG-SNGAGLQSHLYQPAFPGMVPA 279
LP + S C P +S +S G SN SH+ P +
Sbjct: 240 MLP----------RDTSSCMT---PYSHSPRTDSSYTGFSNHQNQFSHV--PLNNFFTDS 284
Query: 280 SLPGPSNVSGSPQLCSSPDSSDVWRGTSIASLRRKALEHTVSMSF 324
L G +N + P+ R +SIA LR KA EHT ++S+
Sbjct: 285 LLTGATN---GHAFETKPEFER--RSSSIAVLRMKAKEHTANISW 324
>gi|55743092 aristaless-like homeobox 4 [Homo sapiens]
Length = 411
Score = 103 bits (258), Expect = 2e-22
Identities = 86/268 (32%), Positives = 123/268 (45%), Gaps = 32/268 (11%)
Query: 62 DITTVGSTPASLAVS---AKDPDKQPGPQGGPNPSQAGQQQGQQKQKRHRTRFTPAQLNE 118
D TVG + L+V K P + +A + + K++R+RT FT QL E
Sbjct: 169 DSDTVGMDSSYLSVKEAGVKGPQDRASSDLPSPLEKADSESNKGKKRRNRTTFTSYQLEE 228
Query: 119 LERSFAKTHYPDIFMREELALRIGLTESRVQVWFQNRRAKWKKRKKTTNVFRAPGTLLPT 178
LE+ F KTHYPD++ RE+LA+R LTE+RVQVWFQNRRAKW+KR++ + +
Sbjct: 229 LEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQMQQVRTHFSTA 288
Query: 179 PGLPQFPSAAAAAAAAMGDSLCSFHANDTRWAAAAMPG--VSQLPLPPALGRQQAMAQSL 236
LP A A L AA+ +P V P+P +
Sbjct: 289 YELPLLTRAENYAQIQNPSWL------GNNGAASPVPACVVPCDPVPACM---------- 332
Query: 237 SQCSLAAGPPPNSMGLSNSLAGSNGAGLQSHLYQPAFPGMVPASLPGPSNVSGSPQLCSS 296
S A PP + +GAG SH+ Q + A+ P +L
Sbjct: 333 ---SPHAHPPGSGASSVTDFLSVSGAG--SHVGQTHMGSLFGAASLSPG--LNGYELNGE 385
Query: 297 PDSSDVWRGTSIASLRRKALEHTVSMSF 324
PD + +SIA+LR KA EH+ ++S+
Sbjct: 386 PDR----KTSSIAALRMKAKEHSAAISW 409
>gi|11056038 visual system homeobox 1 isoform a [Homo sapiens]
Length = 365
Score = 103 bits (258), Expect = 2e-22
Identities = 53/118 (44%), Positives = 72/118 (61%), Gaps = 3/118 (2%)
Query: 47 PNSDPVEGATLLPGEDITTVGSTPASLAVSAKDPDKQPGPQGGPNPSQAGQQQGQQKQKR 106
P P A L P +G S +VS D D Q + N +A G++K++R
Sbjct: 110 PPRGPEPAAPLAPSRPPPALGRQKRSDSVSTSDEDSQSEDR---NDLKASPTLGKRKKRR 166
Query: 107 HRTRFTPAQLNELERSFAKTHYPDIFMREELALRIGLTESRVQVWFQNRRAKWKKRKK 164
HRT FT QL ELE++F++ HYPD++ RE LA++ L E R+QVWFQNRRAKW+KR+K
Sbjct: 167 HRTVFTAHQLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREK 224
>gi|12707580 paired-like homeobox 2b [Homo sapiens]
Length = 314
Score = 102 bits (255), Expect = 4e-22
Identities = 83/226 (36%), Positives = 112/226 (49%), Gaps = 33/226 (14%)
Query: 101 QQKQKRHRTRFTPAQLNELERSFAKTHYPDIFMREELALRIGLTESRVQVWFQNRRAKWK 160
++KQ+R RT FT AQL ELER FA+THYPDI+ REELAL+I LTE+RVQVWFQNRRAK++
Sbjct: 95 KRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFR 154
Query: 161 KRKKTTNVFRAPGTLLPTPGLPQFPSAAAAAAAAMGDS---LCSFHANDTRWAAAAMPGV 217
K+++ +AAAAAAA G S S ++++ A + P
Sbjct: 155 KQERA--------------------AAAAAAAAKNGSSGKKSDSSRDDESKEAKSTDPDS 194
Query: 218 SQLPLP-----PALGRQQAMAQSLSQCSL--AAGP--PPNSMGLSNSLAGSNGAGLQSHL 268
+ P P P+ G S AAGP P G + A + A +
Sbjct: 195 TGGPGPNPNPTPSCGANGGGGGGPSPAGAPGAAGPGGPGGEPGKGGAAAAAAAAAAAAAA 254
Query: 269 YQPAFP-GMVPASLPGPSNVSGSPQLCSSPDSSDVWRGTSIASLRR 313
A G+ A PG G + S PDS + ++SL+R
Sbjct: 255 AAAAAAGGLAAAGGPGQGWAPGPGPITSIPDSLGGPFASVLSSLQR 300
>gi|89145413 short stature homeobox 2 isoform a [Homo sapiens]
Length = 331
Score = 102 bits (254), Expect = 5e-22
Identities = 94/295 (31%), Positives = 132/295 (44%), Gaps = 46/295 (15%)
Query: 32 GVGGSDPGGHPGDLAPNSDPVEGATLLPGEDITTVGSTPASLAVSAKDPDKQPGPQGGPN 91
GVGG GG G PV + E GS P VS + D++ +G +
Sbjct: 77 GVGGGGAGGGAGG---GRSPVRELDMGAAERSREPGS-PRLTEVSPELKDRKEDAKGMED 132
Query: 92 PSQAGQQQGQQKQKRHRTRFTPAQLNELERSFAKTHYPDIFMREELALRIGLTESRVQVW 151
Q + KQ+R RT FT QLNELER F +THYPD FMREEL+ R+GL+E+RVQVW
Sbjct: 133 EGQT-----KIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVW 187
Query: 152 FQNRRAKWKKRKKTTNVFRAPGTLLPTPGLPQFPSAAAAAAAAMGDSLCSF----HANDT 207
FQNRRAK +K++ + G L+ QF + A +G F H N T
Sbjct: 188 FQNRRAKCRKQENQLH----KGVLIGAAS--QFEACRVAPYVNVGALRMPFQQDSHCNVT 241
Query: 208 RWAAAAMPGVSQLPLPPALGRQQAMAQSLSQCSLAAGPPPNSMGLSNSLAGSNGAGLQSH 267
+ +QL L A+ A A LAA P +
Sbjct: 242 PLSFQVQ---AQLQLDSAV----AHAHHHLHPHLAAHAP--------------------Y 274
Query: 268 LYQPAFPGMVPASLPGPSNVSGSPQLCSSPDSSDVWRGTSIASLRRKALEHTVSM 322
+ PA P +P + + S + + ++ + + +SIA LR KA +H ++
Sbjct: 275 MMFPAPPFGLPLATLAADSASAASVVAAAAAAKTTSKNSSIADLRLKAKKHAAAL 329
>gi|152963644 paired-like homeodomain transcription factor 1 [Homo
sapiens]
Length = 314
Score = 101 bits (251), Expect = 1e-21
Identities = 98/309 (31%), Positives = 139/309 (44%), Gaps = 46/309 (14%)
Query: 30 RLGVGGSDPGGHPGDLAPNSDPVEGATLLPGEDITTVGSTPASLAVSAKDPDKQP-GPQ- 87
RL G P P D+ P A P E + S + + K+ +P GP+
Sbjct: 12 RLPEGLRPPPPPPHDMGPAFHLARPAD--PREPLENSASESSDTELPEKERGGEPKGPED 69
Query: 88 ---GGPNPSQAGQQQGQQKQKRHRTRFTPAQLNELERSFAKTHYPDIFMREELALRIGLT 144
GG A ++KQ+R RT FT QL ELE +F + YPD+ MREE+A+ LT
Sbjct: 70 SGAGGTGCGGADDPAKKKKQRRQRTHFTSQQLQELEATFQRNRYPDMSMREEIAVWTNLT 129
Query: 145 ESRVQVWFQNRRAKWKKRKKTTNVFRAPGTLLPT-PGLPQFPSAAAAAAAAMGDSLCSFH 203
E RV+VWF+NRRAKW+KR++ + G +P GL Q AA + +
Sbjct: 130 EPRVRVWFKNRRAKWRKRERNQQLDLCKGGYVPQFSGLVQPYEDVYAAGYSYNN------ 183
Query: 204 ANDTRWAAAAMPGVSQLPLPPALGRQQAMAQSLSQCSLAAGPPPNSMGLSNSLAGSNGAG 263
WAA ++ + PL LS S+ + P S S ++ S G G
Sbjct: 184 -----WAAKSL---APAPLSTKSFTFFNSMSPLSSQSMFSAPSSIS---SMTMPSSMGPG 232
Query: 264 LQSHLYQPAFPGMVPASLPGPSNVSG-------SPQLC--SSPDSS-DVWRGT---SIAS 310
A PGM + L +N++G SP C +P S V+R T S+AS
Sbjct: 233 --------AVPGMPNSGLNNINNLTGSSLNSAMSPGACPYGTPASPYSVYRDTCNSSLAS 284
Query: 311 LRRKALEHT 319
LR K+ +H+
Sbjct: 285 LRLKSKQHS 293
>gi|20070107 orthodenticle homeobox 1 [Homo sapiens]
Length = 354
Score = 101 bits (251), Expect = 1e-21
Identities = 72/179 (40%), Positives = 99/179 (55%), Gaps = 22/179 (12%)
Query: 102 QKQKRHRTRFTPAQLNELERSFAKTHYPDIFMREELALRIGLTESRVQVWFQNRRAKWKK 161
+KQ+R RT FT +QL+ LE FAKT YPDIFMREE+AL+I L ESRVQVWF+NRRAK ++
Sbjct: 36 RKQRRERTTFTRSQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQ 95
Query: 162 -------------RKKTTNVFRAPGTLLPTPGLPQFPSAAAAAAAAMGDSLCSFHANDTR 208
+KK++ V + G + QF A +++A+ S S AN
Sbjct: 96 QQQSGSGTKSRPAKKKSSPVRESSG----SESSGQFTPPAVSSSASSSSSASSSSANP-- 149
Query: 209 WAAAAMPGVSQLPLPPALGRQQAMAQSL-SQCSLAAGPPPNSMGLSNSLAG-SNGAGLQ 265
AAAA G+ P+ A A S+ S S++ G P S+ + LA SN + +Q
Sbjct: 150 -AAAAAAGLGGNPVAAASSLSTPAASSIWSPASISPGSAPASVSVPEPLAAPSNTSCMQ 207
>gi|7706659 paired related homeobox 2 [Homo sapiens]
Length = 253
Score = 99.4 bits (246), Expect = 4e-21
Identities = 69/220 (31%), Positives = 103/220 (46%), Gaps = 18/220 (8%)
Query: 38 PGGHPGDLAPNSDPVEGATLLPGEDITTVG---STPASLAVSAKDPDKQPG--------- 85
P PGD A + LL E++ G + P + A + + ++P
Sbjct: 24 PALGPGDCAQARKNFSVSHLLDLEEVAAAGRLAARPGARAEAREGAAREPSGGSSGSEAA 83
Query: 86 PQGG--PNPSQAGQQQGQQKQKRHRTRFTPAQLNELERSFAKTHYPDIFMREELALRIGL 143
PQ G P+P + + ++KQ+R+RT F +QL LER F +THYPD F+REELA R+ L
Sbjct: 84 PQDGECPSPGRGSAAKRKKKQRRNRTTFNSSQLQALERVFERTHYPDAFVREELARRVNL 143
Query: 144 TESRVQVWFQNRRAKWKKRKKTTNVFRAPGTLLPTPGLPQFPSAAAAAAAAMGDSLCSFH 203
+E+RVQVWFQNRRAK+++ ++ R+ L A A+ S+
Sbjct: 144 SEARVQVWFQNRRAKFRRNERAMLASRSASLLKSYSQEAAIEQPVAPRPTALSPDYLSWT 203
Query: 204 ANDTRWAAAAMPGVSQLPLPPALGRQQAMAQSLSQCSLAA 243
A+ S P P + MA S++ L A
Sbjct: 204 ASSPYSTVPPYSPGSSGPATPGVN----MANSIASLRLKA 239
>gi|122937321 UNC homeobox [Homo sapiens]
Length = 531
Score = 99.0 bits (245), Expect = 5e-21
Identities = 66/156 (42%), Positives = 83/156 (53%), Gaps = 19/156 (12%)
Query: 12 LGMKDAAELLGHR-EAVKCRLGVGGSDPGGHPGDLAPNSDPVEGATLLPGEDITTVGSTP 70
LG EL GH+ ++ V S G G A + V LLP P
Sbjct: 28 LGHHHVYELAGHQLQSAAAAASVPFSIDGLLGGSCAAAASVVNPTPLLPAACGVGGDGQP 87
Query: 71 ASLAVSAKDPDKQ-PGPQGGPNPSQAGQQQGQQKQKRHRTRFTPAQLNELERSFAKTHYP 129
L+ S DPDK+ PG K++R RT FT QL ELE++F ++HYP
Sbjct: 88 FKLSDSG-DPDKESPGC----------------KRRRTRTNFTGWQLEELEKAFNESHYP 130
Query: 130 DIFMREELALRIGLTESRVQVWFQNRRAKWKKRKKT 165
D+FMRE LALR+ L ESRVQVWFQNRRAKW+K++ T
Sbjct: 131 DVFMREALALRLDLVESRVQVWFQNRRAKWRKKENT 166
>gi|4505619 paired box 7 isoform 1 [Homo sapiens]
Length = 520
Score = 98.6 bits (244), Expect = 7e-21
Identities = 71/203 (34%), Positives = 96/203 (47%), Gaps = 26/203 (12%)
Query: 101 QQKQKRHRTRFTPAQLNELERSFAKTHYPDIFMREELALRIGLTESRVQVWFQNRRAKWK 160
++KQ+R RT FT QL ELE++F +THYPDI+ REELA R LTE+RVQVWF NRRA+W+
Sbjct: 214 KRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWR 273
Query: 161 KRKKTTNV----FRAPGTLLPT--PGLP--QFPSAAAAAAAAMGDSLCSFHANDTRWAAA 212
K+ + PG PT P LP Q P + D + H
Sbjct: 274 KQAGANQLAAFNHLLPGGFPPTGMPTLPPYQLPDSTYPTTTISQDGGSTVHRPQ------ 327
Query: 213 AMPGVSQLPLPPALGRQQAMAQSLSQCSLAAGPPPNSMGLSNSLAGSNGAGLQSHLYQPA 272
PLPP+ Q +A + + ++ S S + N A +H+ P
Sbjct: 328 --------PLPPSTMHQGGLAAAAAAADTSSAYGARHSFSSYSDSFMNPAAPSNHM-NPV 378
Query: 273 FPGMVP---ASLPGPSNVSGSPQ 292
G+ P + L PS V PQ
Sbjct: 379 SNGLSPQVMSILGNPSAVPPQPQ 401
>gi|7524359 paired box 7 isoform 2 [Homo sapiens]
Length = 518
Score = 98.6 bits (244), Expect = 7e-21
Identities = 71/203 (34%), Positives = 96/203 (47%), Gaps = 26/203 (12%)
Query: 101 QQKQKRHRTRFTPAQLNELERSFAKTHYPDIFMREELALRIGLTESRVQVWFQNRRAKWK 160
++KQ+R RT FT QL ELE++F +THYPDI+ REELA R LTE+RVQVWF NRRA+W+
Sbjct: 212 KRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWR 271
Query: 161 KRKKTTNV----FRAPGTLLPT--PGLP--QFPSAAAAAAAAMGDSLCSFHANDTRWAAA 212
K+ + PG PT P LP Q P + D + H
Sbjct: 272 KQAGANQLAAFNHLLPGGFPPTGMPTLPPYQLPDSTYPTTTISQDGGSTVHRPQ------ 325
Query: 213 AMPGVSQLPLPPALGRQQAMAQSLSQCSLAAGPPPNSMGLSNSLAGSNGAGLQSHLYQPA 272
PLPP+ Q +A + + ++ S S + N A +H+ P
Sbjct: 326 --------PLPPSTMHQGGLAAAAAAADTSSAYGARHSFSSYSDSFMNPAAPSNHM-NPV 376
Query: 273 FPGMVP---ASLPGPSNVSGSPQ 292
G+ P + L PS V PQ
Sbjct: 377 SNGLSPQVMSILGNPSAVPPQPQ 399
>gi|207029223 paired box 7 isoform 3 [Homo sapiens]
Length = 505
Score = 98.6 bits (244), Expect = 7e-21
Identities = 71/203 (34%), Positives = 96/203 (47%), Gaps = 26/203 (12%)
Query: 101 QQKQKRHRTRFTPAQLNELERSFAKTHYPDIFMREELALRIGLTESRVQVWFQNRRAKWK 160
++KQ+R RT FT QL ELE++F +THYPDI+ REELA R LTE+RVQVWF NRRA+W+
Sbjct: 214 KRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWR 273
Query: 161 KRKKTTNV----FRAPGTLLPT--PGLP--QFPSAAAAAAAAMGDSLCSFHANDTRWAAA 212
K+ + PG PT P LP Q P + D + H
Sbjct: 274 KQAGANQLAAFNHLLPGGFPPTGMPTLPPYQLPDSTYPTTTISQDGGSTVHRPQ------ 327
Query: 213 AMPGVSQLPLPPALGRQQAMAQSLSQCSLAAGPPPNSMGLSNSLAGSNGAGLQSHLYQPA 272
PLPP+ Q +A + + ++ S S + N A +H+ P
Sbjct: 328 --------PLPPSTMHQGGLAAAAAAADTSSAYGARHSFSSYSDSFMNPAAPSNHM-NPV 378
Query: 273 FPGMVP---ASLPGPSNVSGSPQ 292
G+ P + L PS V PQ
Sbjct: 379 SNGLSPQVMSILGNPSAVPPQPQ 401
>gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Homo
sapiens]
Length = 406
Score = 98.6 bits (244), Expect = 7e-21
Identities = 59/142 (41%), Positives = 74/142 (52%), Gaps = 14/142 (9%)
Query: 85 GPQGGPNPSQAGQQQGQQKQKRHRTRFTPAQLNELERSFAKTHYPDIFMREELALRIGLT 144
GPQ P A Q ++++R RT FT QL ELE F ++ YPD+ RE LA R+ LT
Sbjct: 120 GPQPAEGPQTAEGPQPPERKRRRRTAFTQFQLQELENFFDESQYPDVVARERLAARLNLT 179
Query: 145 ESRVQVWFQNRRAKWKKRKKTTNVFRAPGTLLPTPGLPQFPSAAAAAAAAMGDSLCSFHA 204
E RVQVWFQNRRAKWK+ ++ + L P L F A AA A+ +LC
Sbjct: 180 EDRVQVWFQNRRAKWKRNQRVLMLRNTATADLAHP-LDMFLGGAYYAAPALDPALC---- 234
Query: 205 NDTRWAAAAMPGVSQLPLPPAL 226
+ V QLP PP L
Sbjct: 235 ---------VHLVPQLPRPPVL 247
>gi|122937484 dorsal root ganglia homeobox [Homo sapiens]
Length = 268
Score = 97.8 bits (242), Expect = 1e-20
Identities = 76/220 (34%), Positives = 105/220 (47%), Gaps = 33/220 (15%)
Query: 101 QQKQKRHRTRFTPAQLNELERSFAKTHYPDIFMREELALRIGLTESRVQVWFQNRRAKWK 160
++KQ+R+RT FT QL LE FA+THYPD+F REELA++I LTE+RVQVWFQNRRAKW+
Sbjct: 35 RRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWR 94
Query: 161 KRKKTTNVFRAPGTLLPTPGLPQFPSAAAAAAAAMGDSLCSFHANDTRWAAAAMPGVSQL 220
K ++ + + PG P + P R + PG
Sbjct: 95 KTERGAS-DQEPGAKEPMAEVTPPP---------------------VRNINSPPPGDQAR 132
Query: 221 PLPPALGRQQAMAQSLSQCSLAAGPPPNSMGLSNSLAGSNGAGLQSHLYQPAFPGMVPAS 280
AL QQ++ +++ AGP S L + A SH+ +
Sbjct: 133 SKKEALEAQQSLGRTVG----PAGPFFPSCLPGTLLNTATYAQALSHVASLKGGPLCSCC 188
Query: 281 LPGPSNVSGSPQL-CSSPDSSDVWRGTSIASLRRKALEHT 319
+P P +S P C S R S+A+LR KA EH+
Sbjct: 189 VPDPMGLSFLPTYGCQSN------RTASVATLRMKAREHS 222
>gi|14249388 retina and anterior neural fold homeobox 2 [Homo
sapiens]
Length = 184
Score = 97.4 bits (241), Expect = 1e-20
Identities = 58/152 (38%), Positives = 83/152 (54%), Gaps = 15/152 (9%)
Query: 80 PDKQPGPQGGPNPSQAGQQQGQQKQKRHRTRFTPAQLNELERSFAKTHYPDIFMREELAL 139
P + P +GG G++ ++K +R+RT FT QL++LER+F +HYPD++ REELA
Sbjct: 5 PGEGPATEGGG--LGPGEEAPKKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAA 62
Query: 140 RIGLTESRVQVWFQNRRAKWKKRKKTTNVFRAPGTLLPTPGLPQFPSAAAAAAAAMGDSL 199
++ L E RVQVWFQNRRAKW+++++ + + P LP+ P+ A AM L
Sbjct: 63 KVHLPEVRVQVWFQNRRAKWRRQER----LESGSGAVAAPRLPEAPALPFARPPAMSLPL 118
Query: 200 CSFHANDTRWAAAAMPGVSQLP--LPPALGRQ 229
W P V LP L P G Q
Sbjct: 119 -------EPWLGPGPPAVPGLPRLLGPGPGLQ 143
>gi|189083681 paired box gene 6 isoform a [Homo sapiens]
Length = 422
Score = 96.3 bits (238), Expect = 3e-20
Identities = 87/306 (28%), Positives = 127/306 (41%), Gaps = 75/306 (24%)
Query: 32 GVGGSDPGGHPGDLAPNSDPVEGATLLPGEDITTVGSTPASLAVSAKDPDKQPGPQGGPN 91
G G+ PG +PG P +G G G S++ + +D D+
Sbjct: 154 GSWGTRPGWYPGTSVPGQPTQDGCQQQEGG-----GENTNSISSNGEDSDEAQM------ 202
Query: 92 PSQAGQQQGQQKQKRHRTRFTPAQLNELERSFAKTHYPDIFMREELALRIGLTESRVQVW 151
+ Q ++K +R+RT FT Q+ LE+ F +THYPD+F RE LA +I L E+R+QVW
Sbjct: 203 -----RLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVW 257
Query: 152 FQNRRAKWKKRKKTTNVFR---------------APGTLLPTPGLPQFPSAAAAAAAAMG 196
F NRRAKW++ +K N R + P P P P ++ + + +G
Sbjct: 258 FSNRRAKWRREEKLRNQRRQASNTPSHIPISSSFSTSVYQPIP-QPTTPVSSFTSGSMLG 316
Query: 197 DSLCSFHANDTRWAAAAMPG---VSQLPLPPALGRQQAMAQSLSQCSLAAGP-------- 245
+ + +T A MP + LP+ P + Q S C L P
Sbjct: 317 RTDTAL--TNTYSALPPMPSFTMANNLPMQPPVPSQ----TSSYSCMLPTSPSVNGRSYD 370
Query: 246 ---PPNSMGLSNS----LAGSNGAGLQSHLYQPAFPGM-VPASLPGPSNVSGSPQLCSSP 297
PP+ NS +G+ GL S PG+ VP +PG S P
Sbjct: 371 TYTPPHMQTHMNSQPMGTSGTTSTGLIS-------PGVSVPVQVPG-----------SEP 412
Query: 298 DSSDVW 303
D S W
Sbjct: 413 DMSQYW 418
>gi|4580424 paired box gene 6 isoform b [Homo sapiens]
Length = 436
Score = 96.3 bits (238), Expect = 3e-20
Identities = 87/306 (28%), Positives = 127/306 (41%), Gaps = 75/306 (24%)
Query: 32 GVGGSDPGGHPGDLAPNSDPVEGATLLPGEDITTVGSTPASLAVSAKDPDKQPGPQGGPN 91
G G+ PG +PG P +G G G S++ + +D D+
Sbjct: 168 GSWGTRPGWYPGTSVPGQPTQDGCQQQEGG-----GENTNSISSNGEDSDEAQM------ 216
Query: 92 PSQAGQQQGQQKQKRHRTRFTPAQLNELERSFAKTHYPDIFMREELALRIGLTESRVQVW 151
+ Q ++K +R+RT FT Q+ LE+ F +THYPD+F RE LA +I L E+R+QVW
Sbjct: 217 -----RLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVW 271
Query: 152 FQNRRAKWKKRKKTTNVFR---------------APGTLLPTPGLPQFPSAAAAAAAAMG 196
F NRRAKW++ +K N R + P P P P ++ + + +G
Sbjct: 272 FSNRRAKWRREEKLRNQRRQASNTPSHIPISSSFSTSVYQPIP-QPTTPVSSFTSGSMLG 330
Query: 197 DSLCSFHANDTRWAAAAMPG---VSQLPLPPALGRQQAMAQSLSQCSLAAGP-------- 245
+ + +T A MP + LP+ P + Q S C L P
Sbjct: 331 RTDTAL--TNTYSALPPMPSFTMANNLPMQPPVPSQ----TSSYSCMLPTSPSVNGRSYD 384
Query: 246 ---PPNSMGLSNS----LAGSNGAGLQSHLYQPAFPGM-VPASLPGPSNVSGSPQLCSSP 297
PP+ NS +G+ GL S PG+ VP +PG S P
Sbjct: 385 TYTPPHMQTHMNSQPMGTSGTTSTGLIS-------PGVSVPVQVPG-----------SEP 426
Query: 298 DSSDVW 303
D S W
Sbjct: 427 DMSQYW 432
>gi|4505615 paired box gene 6 isoform a [Homo sapiens]
Length = 422
Score = 96.3 bits (238), Expect = 3e-20
Identities = 87/306 (28%), Positives = 127/306 (41%), Gaps = 75/306 (24%)
Query: 32 GVGGSDPGGHPGDLAPNSDPVEGATLLPGEDITTVGSTPASLAVSAKDPDKQPGPQGGPN 91
G G+ PG +PG P +G G G S++ + +D D+
Sbjct: 154 GSWGTRPGWYPGTSVPGQPTQDGCQQQEGG-----GENTNSISSNGEDSDEAQM------ 202
Query: 92 PSQAGQQQGQQKQKRHRTRFTPAQLNELERSFAKTHYPDIFMREELALRIGLTESRVQVW 151
+ Q ++K +R+RT FT Q+ LE+ F +THYPD+F RE LA +I L E+R+QVW
Sbjct: 203 -----RLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVW 257
Query: 152 FQNRRAKWKKRKKTTNVFR---------------APGTLLPTPGLPQFPSAAAAAAAAMG 196
F NRRAKW++ +K N R + P P P P ++ + + +G
Sbjct: 258 FSNRRAKWRREEKLRNQRRQASNTPSHIPISSSFSTSVYQPIP-QPTTPVSSFTSGSMLG 316
Query: 197 DSLCSFHANDTRWAAAAMPG---VSQLPLPPALGRQQAMAQSLSQCSLAAGP-------- 245
+ + +T A MP + LP+ P + Q S C L P
Sbjct: 317 RTDTAL--TNTYSALPPMPSFTMANNLPMQPPVPSQ----TSSYSCMLPTSPSVNGRSYD 370
Query: 246 ---PPNSMGLSNS----LAGSNGAGLQSHLYQPAFPGM-VPASLPGPSNVSGSPQLCSSP 297
PP+ NS +G+ GL S PG+ VP +PG S P
Sbjct: 371 TYTPPHMQTHMNSQPMGTSGTTSTGLIS-------PGVSVPVQVPG-----------SEP 412
Query: 298 DSSDVW 303
D S W
Sbjct: 413 DMSQYW 418
>gi|113204604 aristaless-like homeobox 3 [Homo sapiens]
Length = 343
Score = 94.7 bits (234), Expect = 1e-19
Identities = 42/73 (57%), Positives = 56/73 (76%)
Query: 92 PSQAGQQQGQQKQKRHRTRFTPAQLNELERSFAKTHYPDIFMREELALRIGLTESRVQVW 151
P + + K++R+RT F+ QL ELE+ F KTHYPD++ RE+LALR LTE+RVQVW
Sbjct: 141 PDSMELAKNKSKKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVW 200
Query: 152 FQNRRAKWKKRKK 164
FQNRRAKW+KR++
Sbjct: 201 FQNRRAKWRKRER 213
>gi|188219638 paired box 3 isoform PAX3i [Homo sapiens]
Length = 483
Score = 93.6 bits (231), Expect = 2e-19
Identities = 48/90 (53%), Positives = 60/90 (66%), Gaps = 6/90 (6%)
Query: 101 QQKQKRHRTRFTPAQLNELERSFAKTHYPDIFMREELALRIGLTESRVQVWFQNRRAKWK 160
++KQ+R RT FT QL ELER+F +THYPDI+ REELA R LTE+RVQVWF NRRA+W+
Sbjct: 215 KRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWR 274
Query: 161 KRKKTTNVFR----APGTLLPT--PGLPQF 184
K+ + PG PT P LP +
Sbjct: 275 KQAGANQLMAFNHLIPGGFPPTAMPTLPTY 304
>gi|31563348 paired box 3 isoform PAX3g [Homo sapiens]
Length = 403
Score = 93.6 bits (231), Expect = 2e-19
Identities = 48/90 (53%), Positives = 60/90 (66%), Gaps = 6/90 (6%)
Query: 101 QQKQKRHRTRFTPAQLNELERSFAKTHYPDIFMREELALRIGLTESRVQVWFQNRRAKWK 160
++KQ+R RT FT QL ELER+F +THYPDI+ REELA R LTE+RVQVWF NRRA+W+
Sbjct: 216 KRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWR 275
Query: 161 KRKKTTNVFR----APGTLLPT--PGLPQF 184
K+ + PG PT P LP +
Sbjct: 276 KQAGANQLMAFNHLIPGGFPPTAMPTLPTY 305
>gi|31563346 paired box 3 isoform PAX3h [Homo sapiens]
Length = 407
Score = 93.6 bits (231), Expect = 2e-19
Identities = 48/90 (53%), Positives = 60/90 (66%), Gaps = 6/90 (6%)
Query: 101 QQKQKRHRTRFTPAQLNELERSFAKTHYPDIFMREELALRIGLTESRVQVWFQNRRAKWK 160
++KQ+R RT FT QL ELER+F +THYPDI+ REELA R LTE+RVQVWF NRRA+W+
Sbjct: 216 KRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWR 275
Query: 161 KRKKTTNVFR----APGTLLPT--PGLPQF 184
K+ + PG PT P LP +
Sbjct: 276 KQAGANQLMAFNHLIPGGFPPTAMPTLPTY 305
>gi|31563344 paired box 3 isoform PAX3e [Homo sapiens]
Length = 505
Score = 93.6 bits (231), Expect = 2e-19
Identities = 48/90 (53%), Positives = 60/90 (66%), Gaps = 6/90 (6%)
Query: 101 QQKQKRHRTRFTPAQLNELERSFAKTHYPDIFMREELALRIGLTESRVQVWFQNRRAKWK 160
++KQ+R RT FT QL ELER+F +THYPDI+ REELA R LTE+RVQVWF NRRA+W+
Sbjct: 216 KRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWR 275
Query: 161 KRKKTTNVFR----APGTLLPT--PGLPQF 184
K+ + PG PT P LP +
Sbjct: 276 KQAGANQLMAFNHLIPGGFPPTAMPTLPTY 305
>gi|31563342 paired box 3 isoform PAX3d [Homo sapiens]
Length = 484
Score = 93.6 bits (231), Expect = 2e-19
Identities = 48/90 (53%), Positives = 60/90 (66%), Gaps = 6/90 (6%)
Query: 101 QQKQKRHRTRFTPAQLNELERSFAKTHYPDIFMREELALRIGLTESRVQVWFQNRRAKWK 160
++KQ+R RT FT QL ELER+F +THYPDI+ REELA R LTE+RVQVWF NRRA+W+
Sbjct: 216 KRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWR 275
Query: 161 KRKKTTNVFR----APGTLLPT--PGLPQF 184
K+ + PG PT P LP +
Sbjct: 276 KQAGANQLMAFNHLIPGGFPPTAMPTLPTY 305
>gi|31563340 paired box 3 isoform PAX3 [Homo sapiens]
Length = 479
Score = 93.6 bits (231), Expect = 2e-19
Identities = 48/90 (53%), Positives = 60/90 (66%), Gaps = 6/90 (6%)
Query: 101 QQKQKRHRTRFTPAQLNELERSFAKTHYPDIFMREELALRIGLTESRVQVWFQNRRAKWK 160
++KQ+R RT FT QL ELER+F +THYPDI+ REELA R LTE+RVQVWF NRRA+W+
Sbjct: 216 KRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWR 275
Query: 161 KRKKTTNVFR----APGTLLPT--PGLPQF 184
K+ + PG PT P LP +
Sbjct: 276 KQAGANQLMAFNHLIPGGFPPTAMPTLPTY 305
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.129 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,007,402
Number of Sequences: 37866
Number of extensions: 924381
Number of successful extensions: 5350
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 268
Number of HSP's that attempted gapping in prelim test: 4439
Number of HSP's gapped (non-prelim): 1182
length of query: 325
length of database: 18,247,518
effective HSP length: 102
effective length of query: 223
effective length of database: 14,385,186
effective search space: 3207896478
effective search space used: 3207896478
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.