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Search of human proteins with 239753941
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239753941 PREDICTED: hypothetical protein [Homo sapiens]
(225 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753941 PREDICTED: hypothetical protein [Homo sapiens] 452 e-128
gi|239748481 PREDICTED: hypothetical protein [Homo sapiens] 259 1e-69
gi|239742445 PREDICTED: hypothetical protein XP_002342517 [Homo ... 257 6e-69
gi|169167967 PREDICTED: hypothetical protein [Homo sapiens] 33 0.26
gi|169167681 PREDICTED: hypothetical protein [Homo sapiens] 33 0.26
gi|157266264 pleckstrin homology-like domain, family B, member 3... 32 0.57
gi|169168202 PREDICTED: hypothetical protein [Homo sapiens] 31 0.98
gi|27886557 msh homeobox 2 [Homo sapiens] 30 1.7
gi|239750121 PREDICTED: hypothetical protein XP_002347280 [Homo ... 30 2.2
gi|4507693 tuberous sclerosis 1 protein isoform 1 [Homo sapiens] 29 2.8
gi|241666464 tuberous sclerosis 1 protein isoform 4 [Homo sapiens] 29 2.8
gi|239756910 PREDICTED: hypothetical protein [Homo sapiens] 29 3.7
gi|239755634 PREDICTED: hypothetical protein [Homo sapiens] 29 3.7
gi|239751413 PREDICTED: hypothetical protein XP_002347827 [Homo ... 29 3.7
gi|239745923 PREDICTED: hypothetical protein XP_002343577 [Homo ... 29 3.7
gi|239744429 PREDICTED: hypothetical protein XP_002343157 [Homo ... 29 3.7
gi|113416879 PREDICTED: hypothetical protein [Homo sapiens] 29 3.7
gi|13899327 nuclear receptor interacting protein 2 [Homo sapiens] 29 3.7
gi|239754474 PREDICTED: similar to mucin [Homo sapiens] 28 4.8
gi|67010025 Sp4 transcription factor [Homo sapiens] 28 4.8
gi|4503905 galanin receptor 2 [Homo sapiens] 28 4.8
gi|51972226 hypothetical protein LOC402573 [Homo sapiens] 28 4.8
gi|169183867 PREDICTED: hypothetical protein [Homo sapiens] 28 6.3
gi|169179781 PREDICTED: hypothetical protein [Homo sapiens] 28 6.3
gi|169180172 PREDICTED: hypothetical protein [Homo sapiens] 28 6.3
gi|15147335 nuclear receptor coactivator 5 [Homo sapiens] 28 6.3
gi|13129104 coiled-coil domain containing 86 [Homo sapiens] 28 6.3
>gi|239753941 PREDICTED: hypothetical protein [Homo sapiens]
Length = 225
Score = 452 bits (1164), Expect = e-128
Identities = 225/225 (100%), Positives = 225/225 (100%)
Query: 1 MIKSFGCLSGRSATLEAPGTAVRGSIAAEKRGTRSGSQLLRENSGAARASASSQLKTRKE 60
MIKSFGCLSGRSATLEAPGTAVRGSIAAEKRGTRSGSQLLRENSGAARASASSQLKTRKE
Sbjct: 1 MIKSFGCLSGRSATLEAPGTAVRGSIAAEKRGTRSGSQLLRENSGAARASASSQLKTRKE 60
Query: 61 NERVWDRRTRAPSQCLGLLKRTGVKENLDPHPEIPREQVVGKPELRVGYPLLSPASSPYP 120
NERVWDRRTRAPSQCLGLLKRTGVKENLDPHPEIPREQVVGKPELRVGYPLLSPASSPYP
Sbjct: 61 NERVWDRRTRAPSQCLGLLKRTGVKENLDPHPEIPREQVVGKPELRVGYPLLSPASSPYP 120
Query: 121 SAGARERASFGHSHRFSSPLILHLVNERFRRSLWKGINSQLTLFGICLFRSCLLKKEGWE 180
SAGARERASFGHSHRFSSPLILHLVNERFRRSLWKGINSQLTLFGICLFRSCLLKKEGWE
Sbjct: 121 SAGARERASFGHSHRFSSPLILHLVNERFRRSLWKGINSQLTLFGICLFRSCLLKKEGWE 180
Query: 181 WKGAEWGRSAGISPAQILKIDEARKRRLLKAELHLIPDHVTASRE 225
WKGAEWGRSAGISPAQILKIDEARKRRLLKAELHLIPDHVTASRE
Sbjct: 181 WKGAEWGRSAGISPAQILKIDEARKRRLLKAELHLIPDHVTASRE 225
>gi|239748481 PREDICTED: hypothetical protein [Homo sapiens]
Length = 199
Score = 259 bits (662), Expect = 1e-69
Identities = 152/227 (66%), Positives = 156/227 (68%), Gaps = 30/227 (13%)
Query: 1 MIKSFGCLSGRSATLEAPGTAVRGSIAAEKRGTRSGSQLLRENSG--AARASASSQLKTR 58
MIKSFGCLSGRSATLEAPGTAVRGSIAAEKRGTR S A SASSQ
Sbjct: 1 MIKSFGCLSGRSATLEAPGTAVRGSIAAEKRGTRKWGWACALGSAPRATPTSASSQ---- 56
Query: 59 KENERVWDRRTRAPSQCLGLLKRTGVKENLDPHPEIPREQVVGKPELRVGYPLLSPASSP 118
P C G G + P Q V +LR G S P
Sbjct: 57 -------------PDTCRGTRATLG---DAPSPPFSGSSQPVTPRKLRCGQ---SQRLQP 97
Query: 119 YPSAGARERASFGHSHRFSSPLILHLVNERFRRSLWKGINSQLTLFGICLFRSCLLKKEG 178
A++ ASFGHSHRFSSPLILHLVNERFRRSLWKGINSQLTLFGICLFRSCLLKKEG
Sbjct: 98 -----AQDTASFGHSHRFSSPLILHLVNERFRRSLWKGINSQLTLFGICLFRSCLLKKEG 152
Query: 179 WEWKGAEWGRSAGISPAQILKIDEARKRRLLKAELHLIPDHVTASRE 225
WEWKGAEWGRSAGISPAQILKIDEARKRRLLKAELHLIPDHVTASRE
Sbjct: 153 WEWKGAEWGRSAGISPAQILKIDEARKRRLLKAELHLIPDHVTASRE 199
>gi|239742445 PREDICTED: hypothetical protein XP_002342517 [Homo
sapiens]
Length = 199
Score = 257 bits (656), Expect = 6e-69
Identities = 151/227 (66%), Positives = 155/227 (68%), Gaps = 30/227 (13%)
Query: 1 MIKSFGCLSGRSATLEAPGTAVRGSIAAEKRGTRSGSQLLRENSG--AARASASSQLKTR 58
MIKSFGCLSGRSATLEAPGTA RGSIAAEKRGTR S A SASSQ
Sbjct: 1 MIKSFGCLSGRSATLEAPGTAERGSIAAEKRGTRKWGWACALGSAPRATPTSASSQ---- 56
Query: 59 KENERVWDRRTRAPSQCLGLLKRTGVKENLDPHPEIPREQVVGKPELRVGYPLLSPASSP 118
P C G G + P Q V +LR G S P
Sbjct: 57 -------------PDTCRGTRATLG---DAPSPPFSGSSQPVTPRKLRCGQ---SQRLQP 97
Query: 119 YPSAGARERASFGHSHRFSSPLILHLVNERFRRSLWKGINSQLTLFGICLFRSCLLKKEG 178
A++ ASFGHSHRFSSPLILHLVNERFRRSLWKGINSQLTLFGICLFRSCLLKKEG
Sbjct: 98 -----AQDTASFGHSHRFSSPLILHLVNERFRRSLWKGINSQLTLFGICLFRSCLLKKEG 152
Query: 179 WEWKGAEWGRSAGISPAQILKIDEARKRRLLKAELHLIPDHVTASRE 225
WEWKGAEWGRSAGISPAQILKIDEARKRRLLKAELHLIPDHVTASRE
Sbjct: 153 WEWKGAEWGRSAGISPAQILKIDEARKRRLLKAELHLIPDHVTASRE 199
>gi|169167967 PREDICTED: hypothetical protein [Homo sapiens]
Length = 460
Score = 32.7 bits (73), Expect = 0.26
Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 12/129 (9%)
Query: 11 RSATLEAPGTAVRGSIAAEKR-GTRSGSQLLRENSGAARASASSQLKTRKENERVWDR-- 67
R+ T G A R + + + G GS+ LR ++G ++ + + ERV D
Sbjct: 198 RTDTASRAGWATRRAPSRRRNFGAPRGSRRLRPDAGKFPEASGGKGQRAAGAERVLDNGR 257
Query: 68 --RTRAPSQCLGL------LKRTGVKENLDPHPEIPREQVVGKPELRVGYPLLSPASSPY 119
R+R P G+ +R G + D P++PR +P G+P + SP
Sbjct: 258 GPRSRLPGLAGGVEPPGWSRERAGAGLSRDS-PQVPRSGSWARPCREQGHPAVLALQSPA 316
Query: 120 PSAGARERA 128
P + AR A
Sbjct: 317 PPSLARAAA 325
>gi|169167681 PREDICTED: hypothetical protein [Homo sapiens]
Length = 460
Score = 32.7 bits (73), Expect = 0.26
Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 12/129 (9%)
Query: 11 RSATLEAPGTAVRGSIAAEKR-GTRSGSQLLRENSGAARASASSQLKTRKENERVWDR-- 67
R+ T G A R + + + G GS+ LR ++G ++ + + ERV D
Sbjct: 198 RTDTASRAGWATRRAPSRRRNFGAPRGSRRLRPDAGKFPEASGGKGQRAAGAERVLDNGR 257
Query: 68 --RTRAPSQCLGL------LKRTGVKENLDPHPEIPREQVVGKPELRVGYPLLSPASSPY 119
R+R P G+ +R G + D P++PR +P G+P + SP
Sbjct: 258 GPRSRLPGLAGGVEPPGWSRERAGAGLSRDS-PQVPRSGSWARPCREQGHPAVLALQSPA 316
Query: 120 PSAGARERA 128
P + AR A
Sbjct: 317 PPSLARAAA 325
>gi|157266264 pleckstrin homology-like domain, family B, member 3
[Homo sapiens]
Length = 640
Score = 31.6 bits (70), Expect = 0.57
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 15 LEAPGTAVRGSIAAEKRGTRSGSQLLRENSGAARASASSQLKTRKENERVWDRRTRAPSQ 74
+E +RG +A E+ R + LRE A+S+ + R++ E+ R ++ +
Sbjct: 133 MEVEVALLRGELAGERVAARREEEQLRE---LLEQQAASEQRGRQQREQEQRRLSQERDR 189
Query: 75 CLGLLKR-TGVKENLDPHPEIPREQVV-GKPELR 106
GL +R + LD PE RE+++ G E+R
Sbjct: 190 LEGLRQRLRKAQGQLDSQPEDQRERLLQGVQEMR 223
>gi|169168202 PREDICTED: hypothetical protein [Homo sapiens]
Length = 460
Score = 30.8 bits (68), Expect = 0.98
Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 12/129 (9%)
Query: 11 RSATLEAPGTAVRGSIAAEKR-GTRSGSQLLRENSGAARASASSQLKTRKENERVWDR-- 67
R+ T G A R + + + G GS+ LR ++G ++ + + ERV +
Sbjct: 198 RTDTASRAGWATRRAPSRRRNFGAPRGSRRLRPDAGKFPEASGGKGQRAAGAERVLNNGR 257
Query: 68 --RTRAPSQCLGL------LKRTGVKENLDPHPEIPREQVVGKPELRVGYPLLSPASSPY 119
R+R P G+ +R G + D P++PR +P G+P + SP
Sbjct: 258 GPRSRLPGLAGGVEPPGWSRERAGAGLSRDS-PQVPRSGSWARPCREQGHPAVLALQSPA 316
Query: 120 PSAGARERA 128
P + AR A
Sbjct: 317 PPSLARAAA 325
>gi|27886557 msh homeobox 2 [Homo sapiens]
Length = 267
Score = 30.0 bits (66), Expect = 1.7
Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 18/96 (18%)
Query: 46 AARASASSQLKTRKENERVWDRRTRAPSQCLGLLKRTGVKENLDPHPEIPREQVVGKPEL 105
A RA SS L + ++W + RA ++ L E+ + ++ KP L
Sbjct: 170 AERAEFSSSLNLTETQVKIWFQNRRAKAKRL-------------QEAELEKLKMAAKPML 216
Query: 106 RVGYPLLSPASSPYPSAGARERASFGHSHRFSSPLI 141
+ L P SSP +A + +G S+ F P++
Sbjct: 217 PSSFSLPFPISSPLQAA-----SIYGASYPFHRPVL 247
>gi|239750121 PREDICTED: hypothetical protein XP_002347280 [Homo
sapiens]
Length = 402
Score = 29.6 bits (65), Expect = 2.2
Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 3/94 (3%)
Query: 47 ARASASSQLKTRKENERVWDRRTRAPSQCLGLLKRTGVKENLDPHPE-IPREQVVGKPEL 105
A S+ R+E+ R R R+ C G + G +LD E PR VVG+ E
Sbjct: 138 AEPSSRRGASKRRESWRTDGERLRSGRGCAGAAR--GPDASLDTRREGWPRAAVVGRHEA 195
Query: 106 RVGYPLLSPASSPYPSAGARERASFGHSHRFSSP 139
R P +S +SS P + +S + R P
Sbjct: 196 RRLKPGVSVSSSLSPGPPLQRSSSLNETLRGRRP 229
>gi|4507693 tuberous sclerosis 1 protein isoform 1 [Homo sapiens]
Length = 1164
Score = 29.3 bits (64), Expect = 2.8
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 49 ASASSQLKTRKENERVWDRRTRAPSQCLGLLKRTGVKENLDPHPEIPREQVVGKPELRVG 108
+S S++L T +W +PS G+ N+ P P +V G G
Sbjct: 331 SSPSTRLITEPPQATLW-----SPSMVCGMTTPPTSPGNVPPDLSHPYSKVFGTTAGGKG 385
Query: 109 YPLLSPASSPYPS 121
PL +PA+SP P+
Sbjct: 386 TPLGTPATSPPPA 398
>gi|241666464 tuberous sclerosis 1 protein isoform 4 [Homo sapiens]
Length = 1113
Score = 29.3 bits (64), Expect = 2.8
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 49 ASASSQLKTRKENERVWDRRTRAPSQCLGLLKRTGVKENLDPHPEIPREQVVGKPELRVG 108
+S S++L T +W +PS G+ N+ P P +V G G
Sbjct: 280 SSPSTRLITEPPQATLW-----SPSMVCGMTTPPTSPGNVPPDLSHPYSKVFGTTAGGKG 334
Query: 109 YPLLSPASSPYPS 121
PL +PA+SP P+
Sbjct: 335 TPLGTPATSPPPA 347
>gi|239756910 PREDICTED: hypothetical protein [Homo sapiens]
Length = 155
Score = 28.9 bits (63), Expect = 3.7
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 171 SCLLKKEGWEWK-GAEWGRSAGISPAQILKIDEARKRRLL 209
+CL K GW + G +W R G+ P Q L + EA R+L
Sbjct: 25 TCL--KRGWSQQDGHKWERGRGVGPHQPLPVPEAAAWRVL 62
>gi|239755634 PREDICTED: hypothetical protein [Homo sapiens]
Length = 449
Score = 28.9 bits (63), Expect = 3.7
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Query: 47 ARASASSQLKTRKENERVWDRRTRAPSQCLGLLKRTGVKENLDPHPE-IPREQVVGKPEL 105
A S+ R+E+ R R R+ C G + G +LD E PR VVG+ E
Sbjct: 138 AEPSSRRGASKRRESWRTDGERLRSGRGCAGAAR--GPDASLDTRREGWPRAAVVGRHEA 195
Query: 106 RVGYPLLSPASSPYPSAGARERASFGHSHR 135
R P +S +SS P + +S + R
Sbjct: 196 RRLKPGVSVSSSLSPGPPLQRSSSLNETLR 225
>gi|239751413 PREDICTED: hypothetical protein XP_002347827 [Homo
sapiens]
Length = 155
Score = 28.9 bits (63), Expect = 3.7
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 171 SCLLKKEGWEWK-GAEWGRSAGISPAQILKIDEARKRRLL 209
+CL K GW + G +W R G+ P Q L + EA R+L
Sbjct: 25 TCL--KRGWSQQDGHKWERGRGVGPHQPLPVPEAAAWRVL 62
>gi|239745923 PREDICTED: hypothetical protein XP_002343577 [Homo
sapiens]
Length = 155
Score = 28.9 bits (63), Expect = 3.7
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 171 SCLLKKEGWEWK-GAEWGRSAGISPAQILKIDEARKRRLL 209
+CL K GW + G +W R G+ P Q L + EA R+L
Sbjct: 25 TCL--KRGWSQQDGHKWERGRGVGPHQPLPVPEAAAWRVL 62
>gi|239744429 PREDICTED: hypothetical protein XP_002343157 [Homo
sapiens]
Length = 449
Score = 28.9 bits (63), Expect = 3.7
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Query: 47 ARASASSQLKTRKENERVWDRRTRAPSQCLGLLKRTGVKENLDPHPE-IPREQVVGKPEL 105
A S+ R+E+ R R R+ C G + G +LD E PR VVG+ E
Sbjct: 138 AEPSSRRGASKRRESWRTDGERLRSGRGCAGAAR--GPDASLDTRREGWPRAAVVGRHEA 195
Query: 106 RVGYPLLSPASSPYPSAGARERASFGHSHR 135
R P +S +SS P + +S + R
Sbjct: 196 RRLKPGVSVSSSLSPGPPLQRSSSLNETLR 225
>gi|113416879 PREDICTED: hypothetical protein [Homo sapiens]
Length = 175
Score = 28.9 bits (63), Expect = 3.7
Identities = 30/97 (30%), Positives = 38/97 (39%), Gaps = 19/97 (19%)
Query: 41 RENSGAARASASSQLKTRKENERVWDRR----TRAPSQCLGLLKRTGVKENLDPHPEIPR 96
R + GAA A R E +RVW RR AP+ L+ L P P P
Sbjct: 93 RADEGAAAA--------RPERQRVWARRLPGSAAAPAPGRDALR-------LPPPPPPPP 137
Query: 97 EQVVGKPELRVGYPLLSPASSPYPSAGARERASFGHS 133
E+ P G P S SP P+ +R GH+
Sbjct: 138 ERPRLPPAGLAGGPADSAPPSPAPAPRSRPAPRPGHA 174
>gi|13899327 nuclear receptor interacting protein 2 [Homo sapiens]
Length = 281
Score = 28.9 bits (63), Expect = 3.7
Identities = 27/90 (30%), Positives = 35/90 (38%), Gaps = 13/90 (14%)
Query: 32 GTRSGSQLLRENSGAARASAS-SQLKTRKENERVWDRRTRAPSQCL----------GLLK 80
G S Q R + G AR +QL+ R + RR + +Q L LK
Sbjct: 49 GAMSTKQEARRDEGEARTRGQEAQLRDRAHLSQ--QRRLKQATQFLHKDSADLLPLDSLK 106
Query: 81 RTGVKENLDPHPEIPREQVVGKPELRVGYP 110
R G ++L P I R V G P G P
Sbjct: 107 RLGTSKDLQPRSVIQRRLVEGNPNWLQGEP 136
>gi|239754474 PREDICTED: similar to mucin [Homo sapiens]
Length = 417
Score = 28.5 bits (62), Expect = 4.8
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 3/91 (3%)
Query: 17 APGTAVRGSIAAEKRGTRSGSQLLRENSGAARASASSQLKTRKENERVWDRRTRAPSQCL 76
A GT R + G+Q E + AA SS +T K + RR P+
Sbjct: 327 AGGTGQRRGSGCSSSANQQGAQDREEEAAAAPVPTSSGHRTEKRKPQQPQRR---PAAGT 383
Query: 77 GLLKRTGVKENLDPHPEIPREQVVGKPELRV 107
G + +G + D RE+ V K + RV
Sbjct: 384 GQRRGSGSSPSADQQRAQDREEEVRKWKKRV 414
>gi|67010025 Sp4 transcription factor [Homo sapiens]
Length = 784
Score = 28.5 bits (62), Expect = 4.8
Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 16 EAPGTAVRGSIAAEKRGTRSGSQLLRENSGA-ARASASSQLKTRKENERVWDRRTRAPSQ 74
E+P ++ + A T S + + ++G A SASS +T +E++ T + +Q
Sbjct: 316 ESPSSSTTCTTTASTSLTSSDTLVSSADTGQYASTSASSSERTIEESQT--PAATESEAQ 373
Query: 75 CLGLLKRTGVKENLDPHPEIPREQVVGKPELR 106
L+ G++ D + + Q+VG+P L+
Sbjct: 374 SSSQLQPNGMQNAQDQSNSLQQVQIVGQPILQ 405
>gi|4503905 galanin receptor 2 [Homo sapiens]
Length = 387
Score = 28.5 bits (62), Expect = 4.8
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 17 APGTAVRGSIAAEKRGTRSGSQLLRENSGAARASASS 53
APG A G + A RGT SGS L RE+S S ++
Sbjct: 314 APGRA-SGRVCAAARGTHSGSVLERESSDLLHMSEAA 349
>gi|51972226 hypothetical protein LOC402573 [Homo sapiens]
Length = 206
Score = 28.5 bits (62), Expect = 4.8
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 15 LEAPGTAVRGSIAAEKRGTRSGSQLLRENSGAARASASSQLKTRK-----ENERVWD 66
L+ P TAV+ +SG Q+ S + AS SSQ++T+ E E +W+
Sbjct: 101 LQLPRTAVKSVSTLMVSALQSGWQMCSWKSSVSSASVSSQVRTQSPLKTPEAELLWE 157
>gi|169183867 PREDICTED: hypothetical protein [Homo sapiens]
Length = 203
Score = 28.1 bits (61), Expect = 6.3
Identities = 27/68 (39%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 112 LSPASSPYPSAGARERASF---GHSHRFSSPL--ILHLVNERFRRSLWKGINSQLTLFGI 166
LSPAS P SAG R S G +P+ LHLV + S WK + L FG+
Sbjct: 129 LSPASRPSSSAGQRRAGSIESAGPGRPRVNPVQKQLHLVIQANFWSFWK--DDALDKFGV 186
Query: 167 CLFRSCLL 174
+FR LL
Sbjct: 187 -VFRPLLL 193
>gi|169179781 PREDICTED: hypothetical protein [Homo sapiens]
Length = 203
Score = 28.1 bits (61), Expect = 6.3
Identities = 27/68 (39%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 112 LSPASSPYPSAGARERASF---GHSHRFSSPL--ILHLVNERFRRSLWKGINSQLTLFGI 166
LSPAS P SAG R S G +P+ LHLV + S WK + L FG+
Sbjct: 129 LSPASRPSSSAGQRRAGSIESAGPGRPRVNPVQKQLHLVIQANFWSFWK--DDALDKFGV 186
Query: 167 CLFRSCLL 174
+FR LL
Sbjct: 187 -VFRPLLL 193
>gi|169180172 PREDICTED: hypothetical protein [Homo sapiens]
Length = 203
Score = 28.1 bits (61), Expect = 6.3
Identities = 27/68 (39%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 112 LSPASSPYPSAGARERASF---GHSHRFSSPL--ILHLVNERFRRSLWKGINSQLTLFGI 166
LSPAS P SAG R S G +P+ LHLV + S WK + L FG+
Sbjct: 129 LSPASRPSSSAGQRRAGSIESAGPGRPRVNPVQKQLHLVIQANFWSFWK--DDALDKFGV 186
Query: 167 CLFRSCLL 174
+FR LL
Sbjct: 187 -VFRPLLL 193
>gi|15147335 nuclear receptor coactivator 5 [Homo sapiens]
Length = 579
Score = 28.1 bits (61), Expect = 6.3
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 17/87 (19%)
Query: 43 NSGAARASASS------------QLKTRKENERVWDRRTRAPSQCLGLLKRTGVKENLDP 90
NSG A++SS Q + N + R + +Q +L + G +N+ P
Sbjct: 440 NSGTVTANSSSASPSVAAGNTPNQNFSTAANSQPQQRSQASGNQPPSILGQGGSAQNMGP 499
Query: 91 HPEIPREQVVGKPELRVGYPLLSPASS 117
P P + + G+P R L+PAS+
Sbjct: 500 RPGAPSQGLFGQPSSR-----LAPASN 521
>gi|13129104 coiled-coil domain containing 86 [Homo sapiens]
Length = 360
Score = 28.1 bits (61), Expect = 6.3
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 92 PEIPREQVVGKPELRVGYPLLSPASSPYPSAGARER 127
PE P + G P L+ G L SP P P A + +R
Sbjct: 59 PERPPKTSPGSPRLQQGAGLESPQGQPEPGAASPQR 94
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.132 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,057,154
Number of Sequences: 37866
Number of extensions: 434382
Number of successful extensions: 1534
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1521
Number of HSP's gapped (non-prelim): 33
length of query: 225
length of database: 18,247,518
effective HSP length: 99
effective length of query: 126
effective length of database: 14,498,784
effective search space: 1826846784
effective search space used: 1826846784
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.