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Search of human proteins with 239753916
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239753916 PREDICTED: hypothetical protein XP_002345830 [Homo
sapiens]
(233 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753916 PREDICTED: hypothetical protein XP_002345830 [Homo ... 454 e-128
gi|239748460 PREDICTED: hypothetical protein [Homo sapiens] 297 6e-81
gi|239742421 PREDICTED: hypothetical protein XP_002342511 [Homo ... 297 6e-81
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 46 3e-05
gi|239755509 PREDICTED: hypothetical protein [Homo sapiens] 44 2e-04
gi|239750019 PREDICTED: hypothetical protein [Homo sapiens] 44 2e-04
gi|239744332 PREDICTED: hypothetical protein XP_002343119 [Homo ... 44 2e-04
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 42 3e-04
gi|239756550 PREDICTED: hypothetical protein XP_002344932 [Homo ... 40 0.001
gi|239745514 PREDICTED: hypothetical protein XP_002343509 [Homo ... 40 0.001
gi|239751929 PREDICTED: hypothetical protein [Homo sapiens] 40 0.002
gi|239746415 PREDICTED: hypothetical protein XP_002344217 [Homo ... 40 0.002
gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Hom... 39 0.003
gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Hom... 39 0.003
gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo sap... 39 0.003
gi|54607124 RNA binding motif protein 15B [Homo sapiens] 39 0.005
gi|239748099 PREDICTED: hypothetical protein [Homo sapiens] 38 0.008
gi|239748159 PREDICTED: hypothetical protein XP_002346542 [Homo ... 37 0.019
gi|33598924 scavenger receptor class A, member 3 isoform 1 [Homo... 37 0.019
gi|32401437 H1 histone family, member N, testis-specific [Homo s... 37 0.019
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 37 0.019
gi|239741995 PREDICTED: hypothetical protein XP_002342368 [Homo ... 36 0.025
gi|239756987 PREDICTED: hypothetical protein XP_002345138 [Homo ... 36 0.032
gi|239746003 PREDICTED: hypothetical protein XP_002344191 [Homo ... 36 0.032
gi|182507165 thymus expressed gene 3-like [Homo sapiens] 36 0.032
gi|169171690 PREDICTED: hypothetical protein [Homo sapiens] 35 0.042
gi|239754641 PREDICTED: hypothetical protein [Homo sapiens] 35 0.042
gi|169213235 PREDICTED: hypothetical protein [Homo sapiens] 35 0.042
gi|169171833 PREDICTED: hypothetical protein [Homo sapiens] 35 0.042
gi|239749183 PREDICTED: hypothetical protein XP_002346949 [Homo ... 35 0.042
>gi|239753916 PREDICTED: hypothetical protein XP_002345830 [Homo
sapiens]
Length = 233
Score = 454 bits (1167), Expect = e-128
Identities = 233/233 (100%), Positives = 233/233 (100%)
Query: 1 METPGEQAGGKGADRCALWKEIHKGPTLRRRVPGNSTPARRARFPRRSGRVGGWRAQVAP 60
METPGEQAGGKGADRCALWKEIHKGPTLRRRVPGNSTPARRARFPRRSGRVGGWRAQVAP
Sbjct: 1 METPGEQAGGKGADRCALWKEIHKGPTLRRRVPGNSTPARRARFPRRSGRVGGWRAQVAP 60
Query: 61 HRPAEPLGLLADAAPVQREAGLGRWRWRRRARAVGTCSPRASRAPPPGRPASASPPAASR 120
HRPAEPLGLLADAAPVQREAGLGRWRWRRRARAVGTCSPRASRAPPPGRPASASPPAASR
Sbjct: 61 HRPAEPLGLLADAAPVQREAGLGRWRWRRRARAVGTCSPRASRAPPPGRPASASPPAASR 120
Query: 121 LPAAAKTTSPAVLSAVGPKAKTNXXXXXXXXXXXXXRRPPARWGNERPRLSFWFPRLPAW 180
LPAAAKTTSPAVLSAVGPKAKTN RRPPARWGNERPRLSFWFPRLPAW
Sbjct: 121 LPAAAKTTSPAVLSAVGPKAKTNXXXXXXXXXXXXXRRPPARWGNERPRLSFWFPRLPAW 180
Query: 181 GVRGGAGPASPEPAQRARQGRGFSRFTPVRRRKLVGAATPGLGPESGSEAVGK 233
GVRGGAGPASPEPAQRARQGRGFSRFTPVRRRKLVGAATPGLGPESGSEAVGK
Sbjct: 181 GVRGGAGPASPEPAQRARQGRGFSRFTPVRRRKLVGAATPGLGPESGSEAVGK 233
>gi|239748460 PREDICTED: hypothetical protein [Homo sapiens]
Length = 272
Score = 297 bits (760), Expect = 6e-81
Identities = 143/143 (100%), Positives = 143/143 (100%)
Query: 1 METPGEQAGGKGADRCALWKEIHKGPTLRRRVPGNSTPARRARFPRRSGRVGGWRAQVAP 60
METPGEQAGGKGADRCALWKEIHKGPTLRRRVPGNSTPARRARFPRRSGRVGGWRAQVAP
Sbjct: 1 METPGEQAGGKGADRCALWKEIHKGPTLRRRVPGNSTPARRARFPRRSGRVGGWRAQVAP 60
Query: 61 HRPAEPLGLLADAAPVQREAGLGRWRWRRRARAVGTCSPRASRAPPPGRPASASPPAASR 120
HRPAEPLGLLADAAPVQREAGLGRWRWRRRARAVGTCSPRASRAPPPGRPASASPPAASR
Sbjct: 61 HRPAEPLGLLADAAPVQREAGLGRWRWRRRARAVGTCSPRASRAPPPGRPASASPPAASR 120
Query: 121 LPAAAKTTSPAVLSAVGPKAKTN 143
LPAAAKTTSPAVLSAVGPKAKTN
Sbjct: 121 LPAAAKTTSPAVLSAVGPKAKTN 143
>gi|239742421 PREDICTED: hypothetical protein XP_002342511 [Homo
sapiens]
Length = 272
Score = 297 bits (760), Expect = 6e-81
Identities = 143/143 (100%), Positives = 143/143 (100%)
Query: 1 METPGEQAGGKGADRCALWKEIHKGPTLRRRVPGNSTPARRARFPRRSGRVGGWRAQVAP 60
METPGEQAGGKGADRCALWKEIHKGPTLRRRVPGNSTPARRARFPRRSGRVGGWRAQVAP
Sbjct: 1 METPGEQAGGKGADRCALWKEIHKGPTLRRRVPGNSTPARRARFPRRSGRVGGWRAQVAP 60
Query: 61 HRPAEPLGLLADAAPVQREAGLGRWRWRRRARAVGTCSPRASRAPPPGRPASASPPAASR 120
HRPAEPLGLLADAAPVQREAGLGRWRWRRRARAVGTCSPRASRAPPPGRPASASPPAASR
Sbjct: 61 HRPAEPLGLLADAAPVQREAGLGRWRWRRRARAVGTCSPRASRAPPPGRPASASPPAASR 120
Query: 121 LPAAAKTTSPAVLSAVGPKAKTN 143
LPAAAKTTSPAVLSAVGPKAKTN
Sbjct: 121 LPAAAKTTSPAVLSAVGPKAKTN 143
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 45.8 bits (107), Expect = 3e-05
Identities = 37/114 (32%), Positives = 47/114 (41%), Gaps = 14/114 (12%)
Query: 26 PTLRRRVPGNSTPARRARFP-----RRSGRVGGWRAQVAPHRPAEPLGLLADAAPVQREA 80
PT RRR P + P RR R P RR+ R +P R + P+ +P +
Sbjct: 554 PTRRRRSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPK-- 611
Query: 81 GLGRWRWRRRARAVGTCSPRASRAPPPGRPASASPPAASRLPAAAKTTSPAVLS 134
RR A RAS +PPP R S SPP R K SP++ S
Sbjct: 612 -------RRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSPSLSS 658
>gi|239755509 PREDICTED: hypothetical protein [Homo sapiens]
Length = 344
Score = 43.5 bits (101), Expect = 2e-04
Identities = 40/128 (31%), Positives = 52/128 (40%), Gaps = 18/128 (14%)
Query: 34 GNSTPARRARFPRRSGRVGGW---RAQVAPHRPAEPLGLLADAAPVQREAGLGR----WR 86
G P++ A F R R W R+ R + A E GLG W+
Sbjct: 187 GRGPPSQAAAFSLRHSRAQPWPSGRSAARRRRRLRRRRRRGERAAAAAEFGLGGRTCVWQ 246
Query: 87 W--RRRARAVGTC-SPRA--------SRAPPPGRPASASPPAASRLPAAAKTTSPAVLSA 135
+ RAR G +PRA SRAPP RP ASP A+ T+PA L
Sbjct: 247 GAAQHRARPAGLARAPRARPRDPAGVSRAPPRPRPHPASPAPGDGALRGAEATAPAALGL 306
Query: 136 VGPKAKTN 143
V P+ K++
Sbjct: 307 VQPRPKSD 314
>gi|239750019 PREDICTED: hypothetical protein [Homo sapiens]
Length = 344
Score = 43.5 bits (101), Expect = 2e-04
Identities = 40/128 (31%), Positives = 52/128 (40%), Gaps = 18/128 (14%)
Query: 34 GNSTPARRARFPRRSGRVGGW---RAQVAPHRPAEPLGLLADAAPVQREAGLGR----WR 86
G P++ A F R R W R+ R + A E GLG W+
Sbjct: 187 GRGPPSQAAAFSLRHSRAQPWPSGRSAARRRRRLRRRRRRGERAAAAAEFGLGGRTCVWQ 246
Query: 87 W--RRRARAVGTC-SPRA--------SRAPPPGRPASASPPAASRLPAAAKTTSPAVLSA 135
+ RAR G +PRA SRAPP RP ASP A+ T+PA L
Sbjct: 247 GAAQHRARPAGLARAPRARPRDPAGVSRAPPRPRPHPASPAPGDGALRGAEATAPAALGL 306
Query: 136 VGPKAKTN 143
V P+ K++
Sbjct: 307 VQPRPKSD 314
>gi|239744332 PREDICTED: hypothetical protein XP_002343119 [Homo
sapiens]
Length = 344
Score = 43.5 bits (101), Expect = 2e-04
Identities = 40/128 (31%), Positives = 52/128 (40%), Gaps = 18/128 (14%)
Query: 34 GNSTPARRARFPRRSGRVGGW---RAQVAPHRPAEPLGLLADAAPVQREAGLGR----WR 86
G P++ A F R R W R+ R + A E GLG W+
Sbjct: 187 GRGPPSQAAAFSLRHSRAQPWPSGRSAARRRRRLRRRRRRGERAAAAAEFGLGGRTCVWQ 246
Query: 87 W--RRRARAVGTC-SPRA--------SRAPPPGRPASASPPAASRLPAAAKTTSPAVLSA 135
+ RAR G +PRA SRAPP RP ASP A+ T+PA L
Sbjct: 247 GAAQHRARPAGLARAPRARPRDPAGVSRAPPRPRPHPASPAPGDGALRGAEATAPAALGL 306
Query: 136 VGPKAKTN 143
V P+ K++
Sbjct: 307 VQPRPKSD 314
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 42.4 bits (98), Expect = 3e-04
Identities = 55/204 (26%), Positives = 72/204 (35%), Gaps = 18/204 (8%)
Query: 26 PTLRRRVPGNSTPARRARFPRRSGRVGGWRAQVAPHRPAEPLGLLADAAPVQREAGLGRW 85
P+L + +P+R + R GR G + P+ P G +P QR G G+
Sbjct: 263 PSLSSHYSDSRSPSRLSPKHRDEGRKTGSQRSSGSRSPS-PSGGSGWGSP-QRNGGSGQ- 319
Query: 86 RWRRRARAVGTCSPRASRAPPPGRPASASPPAASRLPAAAKTTSPAVLSAVGPKAKTNXX 145
R+ A G S PP +P+S SP + AAA T + P++ +
Sbjct: 320 ----RSGAHG--GRPGSAHSPPDKPSSPSPRVRDKAAAAAPTPPARGKESPSPRSAPSSQ 373
Query: 146 XXXXXXXXXXXRRPPARWGNERPRLSFWFPRLPAWGVRGGAGPASPEPAQRARQGRGFSR 205
RR R R R S PR G P PA R SR
Sbjct: 374 GRGGRAAGGAGRRRRRRRRRRRSRSSASAPRR--------RGRRRPRPAPPRGSSRSLSR 425
Query: 206 FTPVRRRKLVGAATPGLGPESGSE 229
G PG GPE GSE
Sbjct: 426 ARSSSDSGS-GRGAPGPGPEPGSE 448
Score = 36.2 bits (82), Expect = 0.025
Identities = 54/198 (27%), Positives = 69/198 (34%), Gaps = 40/198 (20%)
Query: 34 GNSTPARRARFPRRSGRVGG--WRAQVAPHRPAEPLGLLADAA--------------PVQ 77
G +P R +RSG GG A P +P+ P + D A P
Sbjct: 307 GWGSPQRNGGSGQRSGAHGGRPGSAHSPPDKPSSPSPRVRDKAAAAAPTPPARGKESPSP 366
Query: 78 REA------------GLGRWRWRRRARAVGTCSPRASRAPPPGRPASASPPAASRLPAAA 125
R A G GR R RRR R S A R RP A P +SR + A
Sbjct: 367 RSAPSSQGRGGRAAGGAGRRRRRRRRRRRSRSSASAPRRRGRRRPRPAPPRGSSRSLSRA 426
Query: 126 KTTSP--AVLSAVGPKAKTNXXXXXXXXXXXXXRRPPARWGNERPRLSFWFPRLPAWGVR 183
+++S + A GP + RPP R R + P A G R
Sbjct: 427 RSSSDSGSGRGAPGPGPEPGSERGHGGHGKRAKERPP------RARPASTSPSPGAHGRR 480
Query: 184 GG----AGPASPEPAQRA 197
GG + SP P R+
Sbjct: 481 GGPEGKSSSRSPGPHPRS 498
Score = 34.7 bits (78), Expect = 0.072
Identities = 45/184 (24%), Positives = 66/184 (35%), Gaps = 20/184 (10%)
Query: 40 RRARFPRRSGRVGGWRAQVAPHRPAEPLGLLADAAPVQREAGLGRWRWRR-------RAR 92
RR R R S R + P RPA P G + + + G R R
Sbjct: 391 RRRRRSRSSASAPRRRGRRRP-RPAPPRGSSRSLSRARSSSDSGSGRGAPGPGPEPGSER 449
Query: 93 AVGTCSPRASRAPPPGRPASASP-PAASRLPAAAKTTSPAVLSAVGPKAKTNXXXXXXXX 151
G RA PP RPAS SP P A + S + P++ ++
Sbjct: 450 GHGGHGKRAKERPPRARPASTSPSPGAHGRRGGPEGKSSSRSPGPHPRSWSSSRSPSKSR 509
Query: 152 XXXXXRRP--PARWGNERPRLSFWFPRLPAWGVRGGAGPASPEPAQRARQGRGFSRFTPV 209
+RP P+R + P+ P + G G A A+ R R ++P+
Sbjct: 510 SRSAEKRPHSPSRSPS---------PKKPLSRDKDGEGRARHSEAEATRARRRSRSYSPI 560
Query: 210 RRRK 213
R+R+
Sbjct: 561 RKRR 564
>gi|239756550 PREDICTED: hypothetical protein XP_002344932 [Homo
sapiens]
Length = 177
Score = 40.4 bits (93), Expect = 0.001
Identities = 32/110 (29%), Positives = 43/110 (39%), Gaps = 4/110 (3%)
Query: 15 RCALWKEIHKGPTLRR-RVPGNSTPARRARFPRRSGRVGGWRA---QVAPHRPAEPLGLL 70
R A+ + GP+ RR R+P R R G + P+ A P +
Sbjct: 22 RPAMLAGLGPGPSPRRGRLPSGGLRLRARPGRRALGLPSPLELAAPSLVPNASASPRPVS 81
Query: 71 ADAAPVQREAGLGRWRWRRRARAVGTCSPRASRAPPPGRPASASPPAASR 120
AP + G RWR R R P +RA P G P ++PPA R
Sbjct: 82 CRRAPPRPVPGAARWRGRPEPRPGSPAGPAPTRARPLGAPGRSAPPARRR 131
>gi|239745514 PREDICTED: hypothetical protein XP_002343509 [Homo
sapiens]
Length = 177
Score = 40.4 bits (93), Expect = 0.001
Identities = 32/110 (29%), Positives = 43/110 (39%), Gaps = 4/110 (3%)
Query: 15 RCALWKEIHKGPTLRR-RVPGNSTPARRARFPRRSGRVGGWRA---QVAPHRPAEPLGLL 70
R A+ + GP+ RR R+P R R G + P+ A P +
Sbjct: 22 RPAMLAGLGPGPSPRRGRLPSGGLRLRARPGRRALGLPSPLELAAPSLVPNASASPRPVS 81
Query: 71 ADAAPVQREAGLGRWRWRRRARAVGTCSPRASRAPPPGRPASASPPAASR 120
AP + G RWR R R P +RA P G P ++PPA R
Sbjct: 82 CRRAPPRPVPGAARWRGRPEPRPGSPAGPAPTRARPLGAPGRSAPPARRR 131
>gi|239751929 PREDICTED: hypothetical protein [Homo sapiens]
Length = 382
Score = 40.0 bits (92), Expect = 0.002
Identities = 43/130 (33%), Positives = 52/130 (40%), Gaps = 29/130 (22%)
Query: 4 PGEQ---AGGKGADRCALWKEIHKGPTLRRR---VPGNSTPARRA--RFPRRSGRVGGWR 55
PG Q GG G R W+ GP++R + G P+R A R R G VG W
Sbjct: 258 PGMQKRSGGGSGGQRAGGWQP---GPSVRESCIDMAGRERPSRGAGQRPQRVRGSVGPWN 314
Query: 56 AQVAPHRPAEPLGLLADAAPVQREAGL-GRWRWRRRARAVGTCSPRASRAPPPGRPASAS 114
LG +R + L W R R R VGTC P PG P + S
Sbjct: 315 LG--------SLGKKNKQETNRRGSSLRAAWSGRGRFRKVGTC-------PTPGPPDAPS 359
Query: 115 PP--AASRLP 122
PP S+LP
Sbjct: 360 PPQLRVSKLP 369
Score = 28.9 bits (63), Expect = 3.9
Identities = 27/84 (32%), Positives = 33/84 (39%), Gaps = 6/84 (7%)
Query: 30 RRVPGNSTPARRARFPRRSGRVGGWRAQVAPHRPAEPLGLLADAAPVQREAGLGRWRWRR 89
RR+P TPA R G A+V+P P P L A P A L R R R
Sbjct: 87 RRLPPALTPAGPYHSARPGGGARARAARVSP--PTPPRSGLDPAVPSPTPAPLARCRQTR 144
Query: 90 RARAVGTCSPRASRAPPPGRPASA 113
+ T R PP R A++
Sbjct: 145 AGLRLST----GGRLSPPLRRAAS 164
Score = 27.7 bits (60), Expect = 8.8
Identities = 45/179 (25%), Positives = 55/179 (30%), Gaps = 28/179 (15%)
Query: 73 AAPVQREAGLGRWRWRRR-----------------ARAVGTCSPRASRAPPPGRPASASP 115
A P QR + R RRR AR G RA+R PP P S
Sbjct: 67 AGPAQRSSCTQPHRRRRRGTRRLPPALTPAGPYHSARPGGGARARAARVSPPTPPRSGLD 126
Query: 116 PAASRLPAAAKTTSPAVLSAVGPKAKTNXXXXXXXXXXXXXRRPPARWGNERPRLSFWFP 175
P A + +PA L+ R W F
Sbjct: 127 P-------AVPSPTPAPLARCRQTRAGLRLSTGGRLSPPLRRAASGEWKRPGGLTQGEFA 179
Query: 176 RLPAWGVRGGAGPASPEPAQRARQGRGFSRFT-PVRRRKLVGAATPGLGPESGSEAVGK 233
A G R P P R GRG +R T P RRR P++G A+G+
Sbjct: 180 GRGAGGARVTHRPGRLRPRGR---GRGRARRTCPARRRGEEDLRVQDSCPQAGCRAMGQ 235
>gi|239746415 PREDICTED: hypothetical protein XP_002344217 [Homo
sapiens]
Length = 382
Score = 40.0 bits (92), Expect = 0.002
Identities = 43/130 (33%), Positives = 52/130 (40%), Gaps = 29/130 (22%)
Query: 4 PGEQ---AGGKGADRCALWKEIHKGPTLRRR---VPGNSTPARRA--RFPRRSGRVGGWR 55
PG Q GG G R W+ GP++R + G P+R A R R G VG W
Sbjct: 258 PGMQKRSGGGSGGQRAGGWQP---GPSVRESCIDMAGRERPSRGAGQRPQRVRGSVGPWN 314
Query: 56 AQVAPHRPAEPLGLLADAAPVQREAGL-GRWRWRRRARAVGTCSPRASRAPPPGRPASAS 114
LG +R + L W R R R VGTC P PG P + S
Sbjct: 315 LG--------SLGKKNKQETNRRGSSLRAAWSGRGRFRKVGTC-------PTPGPPDAPS 359
Query: 115 PP--AASRLP 122
PP S+LP
Sbjct: 360 PPQLRVSKLP 369
Score = 28.9 bits (63), Expect = 3.9
Identities = 27/84 (32%), Positives = 33/84 (39%), Gaps = 6/84 (7%)
Query: 30 RRVPGNSTPARRARFPRRSGRVGGWRAQVAPHRPAEPLGLLADAAPVQREAGLGRWRWRR 89
RR+P TPA R G A+V+P P P L A P A L R R R
Sbjct: 87 RRLPPALTPAGPYHSARPGGGARARAARVSP--PTPPRSGLDPAVPSPTPAPLARCRQTR 144
Query: 90 RARAVGTCSPRASRAPPPGRPASA 113
+ T R PP R A++
Sbjct: 145 AGLRLST----GGRLSPPLRRAAS 164
Score = 27.7 bits (60), Expect = 8.8
Identities = 45/179 (25%), Positives = 55/179 (30%), Gaps = 28/179 (15%)
Query: 73 AAPVQREAGLGRWRWRRR-----------------ARAVGTCSPRASRAPPPGRPASASP 115
A P QR + R RRR AR G RA+R PP P S
Sbjct: 67 AGPAQRSSCTQPHRRRRRGTRRLPPALTPAGPYHSARPGGGARARAARVSPPTPPRSGLD 126
Query: 116 PAASRLPAAAKTTSPAVLSAVGPKAKTNXXXXXXXXXXXXXRRPPARWGNERPRLSFWFP 175
P A + +PA L+ R W F
Sbjct: 127 P-------AVPSPTPAPLARCRQTRAGLRLSTGGRLSPPLRRAASGEWKRPGGLTQGEFA 179
Query: 176 RLPAWGVRGGAGPASPEPAQRARQGRGFSRFT-PVRRRKLVGAATPGLGPESGSEAVGK 233
A G R P P R GRG +R T P RRR P++G A+G+
Sbjct: 180 GRGAGGARVTHRPGRLRPRGR---GRGRARRTCPARRRGEEDLRVQDSCPQAGCRAMGQ 235
>gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Homo
sapiens]
Length = 1188
Score = 39.3 bits (90), Expect = 0.003
Identities = 30/89 (33%), Positives = 35/89 (39%), Gaps = 2/89 (2%)
Query: 56 AQVAPHRPAEP--LGLLADAAPVQREAGLGRWRWRRRARAVGTCSPRASRAPPPGRPASA 113
+QV P R EP G L AP G + + RA P APP PA
Sbjct: 350 SQVYPDRAPEPDCPGELKATAPASPRLGQSQSQADERAGTPPPAPPLPPPAPPLPPPAPP 409
Query: 114 SPPAASRLPAAAKTTSPAVLSAVGPKAKT 142
PPAA LP A K P PK+ +
Sbjct: 410 LPPAAPPLPCAQKAAHPPAGFTKTPKSSS 438
>gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Homo
sapiens]
Length = 1188
Score = 39.3 bits (90), Expect = 0.003
Identities = 30/89 (33%), Positives = 35/89 (39%), Gaps = 2/89 (2%)
Query: 56 AQVAPHRPAEP--LGLLADAAPVQREAGLGRWRWRRRARAVGTCSPRASRAPPPGRPASA 113
+QV P R EP G L AP G + + RA P APP PA
Sbjct: 350 SQVYPDRAPEPDCPGELKATAPASPRLGQSQSQADERAGTPPPAPPLPPPAPPLPPPAPP 409
Query: 114 SPPAASRLPAAAKTTSPAVLSAVGPKAKT 142
PPAA LP A K P PK+ +
Sbjct: 410 LPPAAPPLPCAQKAAHPPAGFTKTPKSSS 438
>gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo
sapiens]
Length = 1188
Score = 39.3 bits (90), Expect = 0.003
Identities = 30/89 (33%), Positives = 35/89 (39%), Gaps = 2/89 (2%)
Query: 56 AQVAPHRPAEP--LGLLADAAPVQREAGLGRWRWRRRARAVGTCSPRASRAPPPGRPASA 113
+QV P R EP G L AP G + + RA P APP PA
Sbjct: 350 SQVYPDRAPEPDCPGELKATAPASPRLGQSQSQADERAGTPPPAPPLPPPAPPLPPPAPP 409
Query: 114 SPPAASRLPAAAKTTSPAVLSAVGPKAKT 142
PPAA LP A K P PK+ +
Sbjct: 410 LPPAAPPLPCAQKAAHPPAGFTKTPKSSS 438
>gi|54607124 RNA binding motif protein 15B [Homo sapiens]
Length = 890
Score = 38.5 bits (88), Expect = 0.005
Identities = 36/106 (33%), Positives = 42/106 (39%), Gaps = 12/106 (11%)
Query: 38 PARRARFPRRSGRVGGWRAQVAPHRPAEPLGLLADAAPVQREAGLGRWRWRRRARAVGT- 96
PAR PR SG GG HR G A R +G G R +A G
Sbjct: 50 PARARDKPRGSGSGGGG------HRDGRGTGDANHRASSGRSSGSGAGGGGRGGKASGDP 103
Query: 97 ----CSPRASRAPPPGRPASASPPAASRLPAAAKTTSPAVLSAVGP 138
SPRAS PPP P A PA AAA ++S++ P
Sbjct: 104 GASGMSPRASPLPPPPPPPGAE-PACPGSSAAAPEYKTLLISSLSP 148
>gi|239748099 PREDICTED: hypothetical protein [Homo sapiens]
Length = 295
Score = 37.7 bits (86), Expect = 0.008
Identities = 36/121 (29%), Positives = 43/121 (35%), Gaps = 12/121 (9%)
Query: 4 PGEQAGGKGADRCALWKEIHKGPTLRRRVPGNS----TPARRARFPRRSGRVGGWRAQVA 59
P +A + +C W + + P S TPA R R R G RA
Sbjct: 141 PWREAARRRPQQCPQWGRARESRSAALASPRVSNAPTTPASRNPGLRAQERQSGRRAAGG 200
Query: 60 PHRPAEPLGLLADAAPVQREAGLGRWRWRRRARAVGTCSPRASRAPPPGRPASASPPAAS 119
AEP P R AG RRA G PR +R PP RP +P A
Sbjct: 201 GGARAEP-----PRVPPCRPAGCSGGNRSRRAAGAG---PRTTRRKPPPRPPGTAPAAGL 252
Query: 120 R 120
R
Sbjct: 253 R 253
>gi|239748159 PREDICTED: hypothetical protein XP_002346542 [Homo
sapiens]
Length = 246
Score = 36.6 bits (83), Expect = 0.019
Identities = 37/121 (30%), Positives = 46/121 (38%), Gaps = 7/121 (5%)
Query: 3 TPGEQAGGKGADRCALWKEIHKGPTLR-RRVPGNSTPARRARFPRRSGRVGGWRAQVAPH 61
T E A G+G R W + P R R A AR +SG +G WRA P
Sbjct: 67 TGAEAAPGRGT-RSPAWND----PRRRWLRFSARGVEAGGARAVAKSGLLGTWRASPRPG 121
Query: 62 RPAEPLGLLADAAPVQREAGLGRWRWRRRARAVGTCSPRASRAPPPGRPASASPPAASRL 121
R G + REA + R R R R++ PPP R A A + R
Sbjct: 122 RGPGSAGRCGPSEARHREARVPR-RQEVGPRTPRLLGRRSAHGPPPLRVAPARVASQGRQ 180
Query: 122 P 122
P
Sbjct: 181 P 181
>gi|33598924 scavenger receptor class A, member 3 isoform 1 [Homo
sapiens]
Length = 606
Score = 36.6 bits (83), Expect = 0.019
Identities = 39/138 (28%), Positives = 50/138 (36%), Gaps = 17/138 (12%)
Query: 21 EIHKGPTLRRRVPGNSTPARRARFPRRSGRVGGWRAQ-----VAPHRPAEPLGLLADAAP 75
EI + T+ R PG P G VGG + + P P P G +A P
Sbjct: 447 EILRNVTILRGAPGPPGPRGFKGDMGVKGPVGGRGPKGDPGSLGPLGPQGPQGQPGEAGP 506
Query: 76 VQREAGLGRWRW---RRRARAVGTCSPRASRAP--------PPGRPASASPPAASRLPA- 123
V +G + + + GT PR P P G P S P P
Sbjct: 507 VGERGPVGPRGFPGLKGSKGSFGTGGPRGQPGPKGDIGPPGPEGPPGSPGPSGPQGKPGI 566
Query: 124 AAKTTSPAVLSAVGPKAK 141
A KT SP A+GPK +
Sbjct: 567 AGKTGSPGQRGAMGPKGE 584
>gi|32401437 H1 histone family, member N, testis-specific [Homo
sapiens]
Length = 255
Score = 36.6 bits (83), Expect = 0.019
Identities = 28/85 (32%), Positives = 35/85 (41%), Gaps = 2/85 (2%)
Query: 46 RRSGRVGGWRAQVAPHR-PAEPLGLLADAAPVQREAGLGRWRWRRRARAVGTCSPRASRA 104
R+ GR AP R PA P P+++ A R WRR ARA + RA R
Sbjct: 130 RKPGRARQEEGTRAPWRTPAAPRSSRRRRQPLRKAARKAREVWRRNARAKAKANARARRT 189
Query: 105 PPPGRPASASPPAASRLPAAAKTTS 129
RP + PP A A T +
Sbjct: 190 -RRARPRAKEPPCARAKEEAGATAA 213
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 36.6 bits (83), Expect = 0.019
Identities = 48/180 (26%), Positives = 58/180 (32%), Gaps = 30/180 (16%)
Query: 36 STPARRARFPRRSGRVGGWRAQVAPHRPAEPLGLLADAAPVQREAGLGRWRWRRRARAVG 95
+TP R PR + A P P +A AAP R RA
Sbjct: 106 ATPPAPPRAPRGAPAAAAAAAPPPTPAPPPPPAPVAAAAPA------------RAPRAAA 153
Query: 96 TCSPRASRAPPPGRPASASPPAASRLPAAAKTTSPAVLSAVGPKAKTNXXXXXXXXXXXX 155
A+ APP PA P A P AA +PA AV P A
Sbjct: 154 A----AATAPPSPGPAQPGPRAQRAAPLAAPPPAPAAPPAVAPPA-------------GP 196
Query: 156 XRRPPARWGNERPRLSFWFPRLPAWGVRGGAGPASPEPAQRARQGRGFSRFTPVRRRKLV 215
R PP P L P+ PA + P P+P R PV R++V
Sbjct: 197 RRAPPPAVAAREPPLP-PPPQPPAPPQQQQPPPPQPQPPPEGGAVRAGGAARPVSLREVV 255
Score = 31.2 bits (69), Expect = 0.79
Identities = 45/169 (26%), Positives = 52/169 (30%), Gaps = 40/169 (23%)
Query: 60 PHRPAEPLGLLADAAPVQREAGLGRWRWRRRARAVGTCSPRASRAPPPGRPASASPPAAS 119
P R L L V R + G +R AR PR PP +PP A
Sbjct: 66 PERTRAELEKLIQQRAVLRVSYKGSISYRNAARVQ---PPRRGATPP-------APPRAP 115
Query: 120 R-LPAAAKTTSPAVLSAVGPKAKTNXXXXXXXXXXXXXRRPPARWGNERPRLSFWFPRLP 178
R PAAA +P A P PPA P R P
Sbjct: 116 RGAPAAAAAAAPPPTPAPPP--------------------PPAPVAAAAP------ARAP 149
Query: 179 AWGVRGGAGPASPEPAQRARQGRGFSRFTPVRRRKLVGAATPGLGPESG 227
P SP PAQ G R P+ AA P + P +G
Sbjct: 150 RAAAAAATAPPSPGPAQ---PGPRAQRAAPLAAPPPAPAAPPAVAPPAG 195
>gi|239741995 PREDICTED: hypothetical protein XP_002342368 [Homo
sapiens]
Length = 224
Score = 36.2 bits (82), Expect = 0.025
Identities = 31/90 (34%), Positives = 37/90 (41%), Gaps = 17/90 (18%)
Query: 33 PGNSTPARRARFPRRSGR--VGGWRAQVAPHRPAEPLGLLADAAPVQREAGLGRWRWRRR 90
P + P RA+ R+SGR GG A+ P R P R AG RR
Sbjct: 108 PASRNPGLRAQ-ERQSGRRAAGGGGARAEPPR-----------VPPCRPAGCSGGNRSRR 155
Query: 91 ARAVGTCSPRASRAPPPGRPASASPPAASR 120
A G PR +R PP RP +P A R
Sbjct: 156 AAGAG---PRTTRRKPPPRPPGTAPAAGLR 182
Score = 27.7 bits (60), Expect = 8.8
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 83 GRWRWRRRARAVGTCSPRASRAPPPGRPASASP 115
G W R +R+ SPR S AP PAS +P
Sbjct: 83 GEWGRARESRSAALASPRVSNAPT--TPASRNP 113
>gi|239756987 PREDICTED: hypothetical protein XP_002345138 [Homo
sapiens]
Length = 459
Score = 35.8 bits (81), Expect = 0.032
Identities = 35/108 (32%), Positives = 46/108 (42%), Gaps = 9/108 (8%)
Query: 34 GNSTPARRARFPRRSGRVGGWRAQV--APHRPAEPLGLLADAA-PVQREAGLGRWRWRRR 90
G T A R R +GR GG +V AP A G A P + R RR
Sbjct: 129 GGFTSAEGKRKTRPAGRGGGRTRRVVAAPESAAAAPGRSPSPADPGSTSSATRVPRARRS 188
Query: 91 ARAVGTCSPRASRAPPPGRPA----SASPPAASRLPAAAKTTSPAVLS 134
+R PR + PG P+ A+PP A R PA+ + +P +LS
Sbjct: 189 SRRA--LQPRHAAPDAPGAPSRSTSQATPPPAPRFPASRRPGAPRLLS 234
Score = 29.6 bits (65), Expect = 2.3
Identities = 32/117 (27%), Positives = 40/117 (34%), Gaps = 27/117 (23%)
Query: 33 PGNSTPARRARFPRRSGRVGGWRAQVAPHRPAEPLGLLADAA-------PVQREAGLGRW 85
PG+++ A R RRS R AP P P + A P R G R
Sbjct: 173 PGSTSSATRVPRARRSSRRALQPRHAAPDAPGAPSRSTSQATPPPAPRFPASRRPGAPRL 232
Query: 86 RWRRRARAV-GTCSPR---------------ASRAPPP----GRPASASPPAASRLP 122
R R R + G+ +P AS PPP P + P RLP
Sbjct: 233 LSRTRQRELGGSAAPSVAFSGDVTLSLERGPASAKPPPQVLTAEPREDATPGEGRLP 289
>gi|239746003 PREDICTED: hypothetical protein XP_002344191 [Homo
sapiens]
Length = 459
Score = 35.8 bits (81), Expect = 0.032
Identities = 35/108 (32%), Positives = 46/108 (42%), Gaps = 9/108 (8%)
Query: 34 GNSTPARRARFPRRSGRVGGWRAQV--APHRPAEPLGLLADAA-PVQREAGLGRWRWRRR 90
G T A R R +GR GG +V AP A G A P + R RR
Sbjct: 129 GGFTSAEGKRKTRPAGRGGGRTRRVVAAPESAAAAPGRSPSPADPGSTSSATRVPRARRS 188
Query: 91 ARAVGTCSPRASRAPPPGRPA----SASPPAASRLPAAAKTTSPAVLS 134
+R PR + PG P+ A+PP A R PA+ + +P +LS
Sbjct: 189 SRRA--LQPRHAAPDAPGAPSRSTSQATPPPAPRFPASRRPGAPRLLS 234
Score = 29.6 bits (65), Expect = 2.3
Identities = 32/117 (27%), Positives = 40/117 (34%), Gaps = 27/117 (23%)
Query: 33 PGNSTPARRARFPRRSGRVGGWRAQVAPHRPAEPLGLLADAA-------PVQREAGLGRW 85
PG+++ A R RRS R AP P P + A P R G R
Sbjct: 173 PGSTSSATRVPRARRSSRRALQPRHAAPDAPGAPSRSTSQATPPPAPRFPASRRPGAPRL 232
Query: 86 RWRRRARAV-GTCSPR---------------ASRAPPP----GRPASASPPAASRLP 122
R R R + G+ +P AS PPP P + P RLP
Sbjct: 233 LSRTRQRELGGSAAPSVAFSGDVTLSLERGPASAKPPPQVLTAEPREDATPGEGRLP 289
>gi|182507165 thymus expressed gene 3-like [Homo sapiens]
Length = 629
Score = 35.8 bits (81), Expect = 0.032
Identities = 51/219 (23%), Positives = 73/219 (33%), Gaps = 37/219 (16%)
Query: 33 PGNSTPARRARFPRRSGR-----------VGGWRAQVAPHRPAEPLGLLADAAPVQREAG 81
PG++ PAR R G W ++ AP A P +P +
Sbjct: 296 PGSARPAREPSLERVGGHPTSPAALSRAWASSWESEAAPEPAAPPAAPSPPDSPAEGRLV 355
Query: 82 LGRWRWRRRARAVGTCSPRASRAPPP---GRPASASPP-----AASR----LPAAAKTTS 129
++ +A G A R PPP GR SPP AA R A+ + S
Sbjct: 356 KAQYIPGAQAATRGLPGRAARRKPPPLTRGRSVEQSPPRERPRAAGRRGRMAEASGRRGS 415
Query: 130 PAVLSAVGPKAKTNXXXXXXXXXXXXXRRPPARWGNERPRLSFWFPRLPAWGVRGGAGPA 189
P A +++T+ + P A E PR P RG A
Sbjct: 416 PRARKASRSQSETSLLGRASAVPSGPPKYPTAE--REEPR--------PPRPRRGPAPTL 465
Query: 190 SPEPAQRARQGRGFSRFTPVRRRKL----VGAATPGLGP 224
+ + A R+ R + R++ A PG GP
Sbjct: 466 AAQAAGSCRRWRSTAEIDAADGRRVRPRAPAARVPGPGP 504
>gi|169171690 PREDICTED: hypothetical protein [Homo sapiens]
Length = 157
Score = 35.4 bits (80), Expect = 0.042
Identities = 28/66 (42%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 60 PHRPAEPLGLLADAAPVQREAGLGRWRWRRRARAVGTCSPRA--SRAPPPG-RPASASPP 116
P P+EPL +P A GR R RAR G C P RAPPPG RP +A+
Sbjct: 9 PTAPSEPLTCPMGVSP----APWGRPLRRSRARP-GPCPPEGLVPRAPPPGPRPTAAATR 63
Query: 117 AASRLP 122
A R+P
Sbjct: 64 ATFRVP 69
>gi|239754641 PREDICTED: hypothetical protein [Homo sapiens]
Length = 229
Score = 35.4 bits (80), Expect = 0.042
Identities = 34/113 (30%), Positives = 46/113 (40%), Gaps = 9/113 (7%)
Query: 4 PGEQAGGKGADRCALWKEIHKGPTLRRRVPGN--STPARRARFPRRSGRVGGWRAQVAPH 61
P + +G RC W+ + + RRR P + P+ R R PRR G+ R P
Sbjct: 43 PRPRCSAEGWRRC--WRRSPRR-SRRRRCPQSLQPPPSLRPRCPRRPGQCNDGRGS-PPA 98
Query: 62 RPAEPLGLLADAAPVQREAGLGRWRWRRRARAVG--TCSPRASRAPPPGRPAS 112
P+ + +G W W RA G T R PPPGRPA+
Sbjct: 99 LPSSTWRTTWSCIRCRWASGPAAW-WPARAAPAGAETREWRTVARPPPGRPAT 150
>gi|169213235 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 35.4 bits (80), Expect = 0.042
Identities = 44/143 (30%), Positives = 56/143 (39%), Gaps = 24/143 (16%)
Query: 4 PGEQAGGKGADRCALWKEIHKGP--------TLRRRVPGNSTPARRARFPRRSGRVGGWR 55
PG +A G+ CA +H GP R+ + TPAR FP SG G
Sbjct: 160 PGSEARGRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPV 219
Query: 56 AQVAPHRPAE-PLGLLADAAPVQREAGLGRWRWRRRARAVGTCSPRASRAPPPGRPASAS 114
+R P G A+P LG R ARA+ PRA PGR
Sbjct: 220 VLSGVNRQHRWPPG----ASP---SRSLGEAGGERPARALR--RPRA-----PGRAGGGG 265
Query: 115 PPAASRLPAAAKTTSPAVLSAVG 137
PP +PA + A L+A+G
Sbjct: 266 PPGGG-IPACSIGPGLARLAALG 287
Score = 29.6 bits (65), Expect = 2.3
Identities = 48/182 (26%), Positives = 58/182 (31%), Gaps = 30/182 (16%)
Query: 70 LADAAPVQREAGLGRWRWRRRARAVGTCSP-----RASRAPP-------PGRPASASPPA 117
++ A + AG G WRR AV +P R S PP PG P+ + P
Sbjct: 28 ISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVSAPPPAPPPPPPPGGPSRSERPR 87
Query: 118 ASRLPAAAKTTSP--AVLSAVGPKAKTNXXXXXXXXXXXXXRRPPARWGNERPRLSFWFP 175
A P A + P S G R PAR P L + P
Sbjct: 88 AGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAALSAAQRGGPAR-AQVPPALRTFSP 146
Query: 176 RLPAWGVRGGAGPASPEPAQRARQGRGFSRFTPV-------------RRRKLVGAATPGL 222
PA R G P R R G +R P+ R RK TP
Sbjct: 147 G-PASPPRASPG-GRPGSEARGRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPAR 204
Query: 223 GP 224
GP
Sbjct: 205 GP 206
>gi|169171833 PREDICTED: hypothetical protein [Homo sapiens]
Length = 157
Score = 35.4 bits (80), Expect = 0.042
Identities = 28/66 (42%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 60 PHRPAEPLGLLADAAPVQREAGLGRWRWRRRARAVGTCSPRA--SRAPPPG-RPASASPP 116
P P+EPL +P A GR R RAR G C P RAPPPG RP +A+
Sbjct: 9 PTAPSEPLTCPMGVSP----APWGRPLRRSRARP-GPCPPEGLVPRAPPPGPRPTAAATR 63
Query: 117 AASRLP 122
A R+P
Sbjct: 64 ATFRVP 69
>gi|239749183 PREDICTED: hypothetical protein XP_002346949 [Homo
sapiens]
Length = 229
Score = 35.4 bits (80), Expect = 0.042
Identities = 34/113 (30%), Positives = 46/113 (40%), Gaps = 9/113 (7%)
Query: 4 PGEQAGGKGADRCALWKEIHKGPTLRRRVPGN--STPARRARFPRRSGRVGGWRAQVAPH 61
P + +G RC W+ + + RRR P + P+ R R PRR G+ R P
Sbjct: 43 PRPRCSAEGWRRC--WRRSPRR-SRRRRCPQSLQPPPSLRPRCPRRPGQCNDGRGS-PPA 98
Query: 62 RPAEPLGLLADAAPVQREAGLGRWRWRRRARAVG--TCSPRASRAPPPGRPAS 112
P+ + +G W W RA G T R PPPGRPA+
Sbjct: 99 LPSSTWRTTWSCIRCRWASGPAAW-WPARAAPAGAETREWRTVARPPPGRPAT 150
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.134 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,660,671
Number of Sequences: 37866
Number of extensions: 655695
Number of successful extensions: 7094
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 424
Number of HSP's that attempted gapping in prelim test: 6063
Number of HSP's gapped (non-prelim): 1330
length of query: 233
length of database: 18,247,518
effective HSP length: 99
effective length of query: 134
effective length of database: 14,498,784
effective search space: 1942837056
effective search space used: 1942837056
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.