Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 239753708

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239753708 PREDICTED: hypothetical protein [Homo sapiens]
         (128 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239753708 PREDICTED: hypothetical protein [Homo sapiens]           271   1e-73
gi|239748268 PREDICTED: hypothetical protein XP_002346625 [Homo ...   271   1e-73
gi|239742169 PREDICTED: hypothetical protein XP_002342419 [Homo ...   271   1e-73
gi|194578898 hypothetical protein LOC100170841 [Homo sapiens]          33   0.079
gi|50355978 T-cell leukemia homeobox 3 [Homo sapiens]                  32   0.18 
gi|239750593 PREDICTED: hypothetical protein XP_002347442 [Homo ...    31   0.30 
gi|34304356 phosphatase and actin regulator 3 isoform 3 [Homo sa...    30   0.39 
gi|34304354 phosphatase and actin regulator 3 isoform 2 [Homo sa...    30   0.39 
gi|18087853 phosphatase and actin regulator 3 isoform 1 [Homo sa...    30   0.39 
gi|67514036 SH3-domain kinase binding protein 1 isoform b [Homo ...    28   1.5  
gi|13994242 SH3-domain kinase binding protein 1 isoform a [Homo ...    28   1.5  
gi|13128992 hypothetical protein MGC2803 [Homo sapiens]                28   1.5  
gi|239752579 PREDICTED: hypothetical protein XP_002348295 [Homo ...    28   2.0  
gi|148664205 endothelial cell adhesion molecule [Homo sapiens]         28   2.0  
gi|75750474 spectrin domain with coiled-coils 1 NSP5a3b [Homo sa...    28   2.0  
gi|75750468 spectrin domain with coiled-coils 1 NSP5a3a [Homo sa...    28   2.0  
gi|150170729 microtubule associated serine/threonine kinase 3 [H...    28   2.0  
gi|103472003 forkhead box O4 [Homo sapiens]                            28   2.6  
gi|27734809 ADP-ribosylation factor-like 10 [Homo sapiens]             28   2.6  
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]        28   2.6  
gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens]    28   2.6  
gi|239752697 PREDICTED: chromosome 1 open reading frame 167 [Hom...    27   3.3  
gi|239752135 PREDICTED: similar to hCG1647452 [Homo sapiens]           27   3.3  
gi|239747231 PREDICTED: chromosome 1 open reading frame 167 [Hom...    27   3.3  
gi|113429379 PREDICTED: similar to hCG1647452 [Homo sapiens]           27   3.3  
gi|239741039 PREDICTED: hypothetical protein LOC284498 [Homo sap...    27   3.3  
gi|110347429 mediator complex subunit 12 [Homo sapiens]                27   3.3  
gi|13699811 WHSC1L1 protein isoform long [Homo sapiens]                27   3.3  
gi|13699813 WHSC1L1 protein isoform short [Homo sapiens]               27   3.3  
gi|130502140 NEZHA isoform 2 [Homo sapiens]                            27   4.4  

>gi|239753708 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 128

 Score =  271 bits (693), Expect = 1e-73
 Identities = 128/128 (100%), Positives = 128/128 (100%)

Query: 1   MTEYPHRPPQPGVLAGTTTPRRSGSPAPRASLVRTQRHRKPTGQHGCLLRLFPTLTRSLA 60
           MTEYPHRPPQPGVLAGTTTPRRSGSPAPRASLVRTQRHRKPTGQHGCLLRLFPTLTRSLA
Sbjct: 1   MTEYPHRPPQPGVLAGTTTPRRSGSPAPRASLVRTQRHRKPTGQHGCLLRLFPTLTRSLA 60

Query: 61  TCSSPARRNAQFASLVLGRVIRLPWKGRAGWGRRLRNWSAAEEAALGRGRGRLAKWIGCG 120
           TCSSPARRNAQFASLVLGRVIRLPWKGRAGWGRRLRNWSAAEEAALGRGRGRLAKWIGCG
Sbjct: 61  TCSSPARRNAQFASLVLGRVIRLPWKGRAGWGRRLRNWSAAEEAALGRGRGRLAKWIGCG 120

Query: 121 RLPLTMCP 128
           RLPLTMCP
Sbjct: 121 RLPLTMCP 128


>gi|239748268 PREDICTED: hypothetical protein XP_002346625 [Homo
           sapiens]
          Length = 128

 Score =  271 bits (693), Expect = 1e-73
 Identities = 128/128 (100%), Positives = 128/128 (100%)

Query: 1   MTEYPHRPPQPGVLAGTTTPRRSGSPAPRASLVRTQRHRKPTGQHGCLLRLFPTLTRSLA 60
           MTEYPHRPPQPGVLAGTTTPRRSGSPAPRASLVRTQRHRKPTGQHGCLLRLFPTLTRSLA
Sbjct: 1   MTEYPHRPPQPGVLAGTTTPRRSGSPAPRASLVRTQRHRKPTGQHGCLLRLFPTLTRSLA 60

Query: 61  TCSSPARRNAQFASLVLGRVIRLPWKGRAGWGRRLRNWSAAEEAALGRGRGRLAKWIGCG 120
           TCSSPARRNAQFASLVLGRVIRLPWKGRAGWGRRLRNWSAAEEAALGRGRGRLAKWIGCG
Sbjct: 61  TCSSPARRNAQFASLVLGRVIRLPWKGRAGWGRRLRNWSAAEEAALGRGRGRLAKWIGCG 120

Query: 121 RLPLTMCP 128
           RLPLTMCP
Sbjct: 121 RLPLTMCP 128


>gi|239742169 PREDICTED: hypothetical protein XP_002342419 [Homo
           sapiens]
          Length = 128

 Score =  271 bits (693), Expect = 1e-73
 Identities = 128/128 (100%), Positives = 128/128 (100%)

Query: 1   MTEYPHRPPQPGVLAGTTTPRRSGSPAPRASLVRTQRHRKPTGQHGCLLRLFPTLTRSLA 60
           MTEYPHRPPQPGVLAGTTTPRRSGSPAPRASLVRTQRHRKPTGQHGCLLRLFPTLTRSLA
Sbjct: 1   MTEYPHRPPQPGVLAGTTTPRRSGSPAPRASLVRTQRHRKPTGQHGCLLRLFPTLTRSLA 60

Query: 61  TCSSPARRNAQFASLVLGRVIRLPWKGRAGWGRRLRNWSAAEEAALGRGRGRLAKWIGCG 120
           TCSSPARRNAQFASLVLGRVIRLPWKGRAGWGRRLRNWSAAEEAALGRGRGRLAKWIGCG
Sbjct: 61  TCSSPARRNAQFASLVLGRVIRLPWKGRAGWGRRLRNWSAAEEAALGRGRGRLAKWIGCG 120

Query: 121 RLPLTMCP 128
           RLPLTMCP
Sbjct: 121 RLPLTMCP 128


>gi|194578898 hypothetical protein LOC100170841 [Homo sapiens]
          Length = 379

 Score = 32.7 bits (73), Expect = 0.079
 Identities = 18/49 (36%), Positives = 20/49 (40%)

Query: 5   PHRPPQPGVLAGTTTPRRSGSPAPRASLVRTQRHRKPTGQHGCLLRLFP 53
           P RPP  G   G    RR  +P PR +  R      PT     LL  FP
Sbjct: 272 PERPPAKGPARGAAKKRRLPAPPPRTAQPRRPAPTLPTTSTFSLLNCFP 320


>gi|50355978 T-cell leukemia homeobox 3 [Homo sapiens]
          Length = 291

 Score = 31.6 bits (70), Expect = 0.18
 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 6/86 (6%)

Query: 2  TEYPHRPPQPGVLAGTTTPRRSGSPAPRASLVRTQRHRKPTGQHGCLLRLFPTLTRSLAT 61
          T +PH P   G+     +P +  +PAPR     +     P G+ G     +P+L  S A 
Sbjct: 9  TPHPHEPISFGIDQILNSPDQDSAPAPRGPDGASYLGGPPGGRPGA---TYPSLPASFAG 65

Query: 62 CSSPARRNAQFA---SLVLGRVIRLP 84
            +P      ++   SL    VIR+P
Sbjct: 66 LGAPFEDAGSYSVNLSLAPAGVIRVP 91


>gi|239750593 PREDICTED: hypothetical protein XP_002347442 [Homo
           sapiens]
          Length = 135

 Score = 30.8 bits (68), Expect = 0.30
 Identities = 16/39 (41%), Positives = 19/39 (48%)

Query: 84  PWKGRAGWGRRLRNWSAAEEAALGRGRGRLAKWIGCGRL 122
           P  GRAGW   L  WS  +   LG   GRL   +  GR+
Sbjct: 71  PGPGRAGWCVALSGWSPRQLTGLGLKVGRLRSVLVVGRV 109


>gi|34304356 phosphatase and actin regulator 3 isoform 3 [Homo
           sapiens]
          Length = 448

 Score = 30.4 bits (67), Expect = 0.39
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 3/48 (6%)

Query: 65  PARRNAQFASLVLGRVIRLPWKGRAGWGRRLRNWSAAEEAALGRGRGR 112
           P RRN++ A+L  GR+ + PWK R     +L+  ++A E  +   +GR
Sbjct: 20  PVRRNSKLATL--GRIFK-PWKWRKKKNEKLKQTTSALEKKMAGRQGR 64


>gi|34304354 phosphatase and actin regulator 3 isoform 2 [Homo
           sapiens]
          Length = 518

 Score = 30.4 bits (67), Expect = 0.39
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 3/48 (6%)

Query: 65  PARRNAQFASLVLGRVIRLPWKGRAGWGRRLRNWSAAEEAALGRGRGR 112
           P RRN++ A+L  GR+ + PWK R     +L+  ++A E  +   +GR
Sbjct: 20  PVRRNSKLATL--GRIFK-PWKWRKKKNEKLKQTTSALEKKMAGRQGR 64


>gi|18087853 phosphatase and actin regulator 3 isoform 1 [Homo
           sapiens]
          Length = 559

 Score = 30.4 bits (67), Expect = 0.39
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 3/48 (6%)

Query: 65  PARRNAQFASLVLGRVIRLPWKGRAGWGRRLRNWSAAEEAALGRGRGR 112
           P RRN++ A+L  GR+ + PWK R     +L+  ++A E  +   +GR
Sbjct: 61  PVRRNSKLATL--GRIFK-PWKWRKKKNEKLKQTTSALEKKMAGRQGR 105


>gi|67514036 SH3-domain kinase binding protein 1 isoform b [Homo
           sapiens]
          Length = 628

 Score = 28.5 bits (62), Expect = 1.5
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)

Query: 8   PPQPGVLA---GTTTPRRSGSPAPRASLVRTQRHR 39
           PP+PG +A   G   P  S +P+P +S + T  HR
Sbjct: 513 PPKPGTMAAGGGGPAPLSSAAPSPLSSSLGTAGHR 547


>gi|13994242 SH3-domain kinase binding protein 1 isoform a [Homo
           sapiens]
          Length = 665

 Score = 28.5 bits (62), Expect = 1.5
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)

Query: 8   PPQPGVLA---GTTTPRRSGSPAPRASLVRTQRHR 39
           PP+PG +A   G   P  S +P+P +S + T  HR
Sbjct: 550 PPKPGTMAAGGGGPAPLSSAAPSPLSSSLGTAGHR 584


>gi|13128992 hypothetical protein MGC2803 [Homo sapiens]
          Length = 176

 Score = 28.5 bits (62), Expect = 1.5
 Identities = 13/33 (39%), Positives = 15/33 (45%)

Query: 5   PHRPPQPGVLAGTTTPRRSGSPAPRASLVRTQR 37
           P RP Q    AG   P+R G P    S V  +R
Sbjct: 88  PQRPDQSAAAAGPGDPKRKGGPGSTLSFVGKRR 120


>gi|239752579 PREDICTED: hypothetical protein XP_002348295 [Homo
           sapiens]
          Length = 240

 Score = 28.1 bits (61), Expect = 2.0
 Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 7/98 (7%)

Query: 20  PRRSGSPAPRASLVRTQRHRKPT-GQHGCLLRLFPTLTRSLATCSSPARRNAQFASLVLG 78
           PR   S     S  R  R R  T G  G  LR       ++ TCS  +++  +  + V+G
Sbjct: 122 PRHCISQDASRSGSRVCRSRPQTRGSGGKKLRQRGEKAAAVKTCSGRSKKPGRQKAAVMG 181

Query: 79  RVIRLPWKGRAGWGRRLRNWSAAEEAALGRGRGRLAKW 116
                  K R G G++ +  +AA   +   G  +L +W
Sbjct: 182 A------KSRGGRGKKPQKAAAAGAKSCNGGGKKLGRW 213


>gi|148664205 endothelial cell adhesion molecule [Homo sapiens]
          Length = 390

 Score = 28.1 bits (61), Expect = 2.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 5   PHRPPQPGVLAGTTTPRRSGSPAPR 29
           PH PP+PG L  T +      P+PR
Sbjct: 322 PHGPPRPGALTPTPSLSSQALPSPR 346


>gi|75750474 spectrin domain with coiled-coils 1 NSP5a3b [Homo
          sapiens]
          Length = 987

 Score = 28.1 bits (61), Expect = 2.0
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 5/41 (12%)

Query: 1  MTEYPHRP--PQPGVLAGTTTPRRSGSPAPRASLVRTQRHR 39
          M  +  RP  P+PG     TT +R+G PAPR   V   R R
Sbjct: 1  MGNHSGRPEDPEPGAF---TTTKRTGIPAPREFSVTVSRER 38


>gi|75750468 spectrin domain with coiled-coils 1 NSP5a3a [Homo
          sapiens]
          Length = 709

 Score = 28.1 bits (61), Expect = 2.0
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 5/41 (12%)

Query: 1  MTEYPHRP--PQPGVLAGTTTPRRSGSPAPRASLVRTQRHR 39
          M  +  RP  P+PG     TT +R+G PAPR   V   R R
Sbjct: 1  MGNHSGRPEDPEPGAF---TTTKRTGIPAPREFSVTVSRER 38


>gi|150170729 microtubule associated serine/threonine kinase 3 [Homo
            sapiens]
          Length = 1309

 Score = 28.1 bits (61), Expect = 2.0
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 5    PHRPPQPGVLAGTTTPRRSGSPAPRA-SLVRTQRHRKPTGQHGCLLRLFP 53
            P R P P V A TT    S SP+  + +      H +P+  HG   +L P
Sbjct: 1121 PCRSPAPDVPADTTASPPSASPSSSSPASPAAAGHTRPSSLHGLAAKLGP 1170


>gi|103472003 forkhead box O4 [Homo sapiens]
          Length = 505

 Score = 27.7 bits (60), Expect = 2.6
 Identities = 11/21 (52%), Positives = 13/21 (61%)

Query: 5  PHRPPQPGVLAGTTTPRRSGS 25
          P   PQPG+L   T PR+ GS
Sbjct: 76 PAGGPQPGILGAVTGPRKGGS 96


>gi|27734809 ADP-ribosylation factor-like 10 [Homo sapiens]
          Length = 244

 Score = 27.7 bits (60), Expect = 2.6
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 73  ASLVLGRVIRLPWKGRAGWGRRLRNWSAAEEAALGRGRGRLAKW 116
           A+ VLG V+ + WK   G GR  R W    EA  G    RL +W
Sbjct: 16  AAAVLGSVLFILWKTYFGRGRE-RRWDRG-EAWWGAEAARLPEW 57


>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
          Length = 2752

 Score = 27.7 bits (60), Expect = 2.6
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 5/55 (9%)

Query: 19  TPRRSGSPAPRASLVRTQRHRKPTGQHG-----CLLRLFPTLTRSLATCSSPARR 68
           +P RS SP P+   + + R R  +G           R  P  +RS++ CS+   R
Sbjct: 908 SPSRSSSPQPKVKAIISPRQRSHSGSSSPSPSRVTSRTTPRRSRSVSPCSNVESR 962


>gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens]
          Length = 753

 Score = 27.7 bits (60), Expect = 2.6
 Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)

Query: 4   YPHRPPQPGVLAGTTTPRRSGSPAPRA 30
           YP  PP P   A +TTP  +G PAP A
Sbjct: 323 YPSGPP-PAASALSTTPGNNGVPAPAA 348


>gi|239752697 PREDICTED: chromosome 1 open reading frame 167 [Homo
           sapiens]
          Length = 697

 Score = 27.3 bits (59), Expect = 3.3
 Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 11/88 (12%)

Query: 20  PRRSGSPAPRASLVRTQRH----RKPTGQHGCLLRLFPTLTRS-LATCSSPARR---NAQ 71
           PR   SP PRA   +++ H    R+   Q  CL  L   L  S  A C + A +   +AQ
Sbjct: 535 PRAHSSPEPRACKAQSKAHKRRLRRKYLQRRCLEALLHGLRGSQQARCLAVAWQHWVDAQ 594

Query: 72  FASLVLGRVIR---LPWKGRAGWGRRLR 96
            A  ++  ++R   L W  +  W R LR
Sbjct: 595 GAEQLVRTLLREWHLRWAWQTWWQRILR 622


>gi|239752135 PREDICTED: similar to hCG1647452 [Homo sapiens]
          Length = 138

 Score = 27.3 bits (59), Expect = 3.3
 Identities = 25/65 (38%), Positives = 27/65 (41%), Gaps = 10/65 (15%)

Query: 58  SLATCSSPARRNAQFASLVLGRV-IRLPWKGRAGWGRRLRNWSAAEEAALGRGRGRLAKW 116
           SL T S P RR     S  LGRV   L   GR G  +R     +A          RL KW
Sbjct: 75  SLHTTSVPERRGRNKDSTSLGRVPALLECSGRKGSSQRTPRQPSAT---------RLPKW 125

Query: 117 IGCGR 121
            G GR
Sbjct: 126 GGPGR 130


>gi|239747231 PREDICTED: chromosome 1 open reading frame 167 [Homo
           sapiens]
          Length = 697

 Score = 27.3 bits (59), Expect = 3.3
 Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 11/88 (12%)

Query: 20  PRRSGSPAPRASLVRTQRH----RKPTGQHGCLLRLFPTLTRS-LATCSSPARR---NAQ 71
           PR   SP PRA   +++ H    R+   Q  CL  L   L  S  A C + A +   +AQ
Sbjct: 535 PRAHSSPEPRACKAQSKAHKRRLRRKYLQRRCLEALLHGLRGSQQARCLAVAWQHWVDAQ 594

Query: 72  FASLVLGRVIR---LPWKGRAGWGRRLR 96
            A  ++  ++R   L W  +  W R LR
Sbjct: 595 GAEQLVRTLLREWHLRWAWQTWWQRILR 622


>gi|113429379 PREDICTED: similar to hCG1647452 [Homo sapiens]
          Length = 138

 Score = 27.3 bits (59), Expect = 3.3
 Identities = 25/65 (38%), Positives = 27/65 (41%), Gaps = 10/65 (15%)

Query: 58  SLATCSSPARRNAQFASLVLGRV-IRLPWKGRAGWGRRLRNWSAAEEAALGRGRGRLAKW 116
           SL T S P RR     S  LGRV   L   GR G  +R     +A          RL KW
Sbjct: 75  SLHTTSVPERRGRNKDSTSLGRVPALLECSGRKGSSQRTPRQPSAT---------RLPKW 125

Query: 117 IGCGR 121
            G GR
Sbjct: 126 GGPGR 130


>gi|239741039 PREDICTED: hypothetical protein LOC284498 [Homo
           sapiens]
          Length = 697

 Score = 27.3 bits (59), Expect = 3.3
 Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 11/88 (12%)

Query: 20  PRRSGSPAPRASLVRTQRH----RKPTGQHGCLLRLFPTLTRS-LATCSSPARR---NAQ 71
           PR   SP PRA   +++ H    R+   Q  CL  L   L  S  A C + A +   +AQ
Sbjct: 535 PRAHSSPEPRACKAQSKAHKRRLRRKYLQRRCLEALLHGLRGSQQARCLAVAWQHWVDAQ 594

Query: 72  FASLVLGRVIR---LPWKGRAGWGRRLR 96
            A  ++  ++R   L W  +  W R LR
Sbjct: 595 GAEQLVRTLLREWHLRWAWQTWWQRILR 622


>gi|110347429 mediator complex subunit 12 [Homo sapiens]
          Length = 2177

 Score = 27.3 bits (59), Expect = 3.3
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 1    MTEYPHRPPQPGVLAGTTTPRRSGSPAP-RASLVRTQRHRKPTGQ 44
            M + P RP  PGVL  T T      P+  + S+ R Q+   P GQ
Sbjct: 1865 MQKLPTRPTYPGVLPTTMTGVMGLEPSSYKTSVYRQQQPAVPQGQ 1909


>gi|13699811 WHSC1L1 protein isoform long [Homo sapiens]
          Length = 1437

 Score = 27.3 bits (59), Expect = 3.3
 Identities = 10/31 (32%), Positives = 18/31 (58%)

Query: 5   PHRPPQPGVLAGTTTPRRSGSPAPRASLVRT 35
           P +PP P  +  T  P+++GSP  +  + +T
Sbjct: 130 PPQPPPPPSVPQTVIPKKTGSPEIKLKITKT 160


>gi|13699813 WHSC1L1 protein isoform short [Homo sapiens]
          Length = 645

 Score = 27.3 bits (59), Expect = 3.3
 Identities = 10/31 (32%), Positives = 18/31 (58%)

Query: 5   PHRPPQPGVLAGTTTPRRSGSPAPRASLVRT 35
           P +PP P  +  T  P+++GSP  +  + +T
Sbjct: 130 PPQPPPPPSVPQTVIPKKTGSPEIKLKITKT 160


>gi|130502140 NEZHA isoform 2 [Homo sapiens]
          Length = 1249

 Score = 26.9 bits (58), Expect = 4.4
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 10/61 (16%)

Query: 8   PPQPGVLAGTTTPRRSGSPAPRASLVRTQRH---------RKPTGQHGCLLRLFPTLTRS 58
           PP   V+ G TT  ++ SP+P   +  T+R          R P       LRL P LTR 
Sbjct: 739 PPAAWVIPGPTTGPKAASPSPARRVPATRRSPGPGPSQSPRSPKHTRPAELRLAP-LTRV 797

Query: 59  L 59
           L
Sbjct: 798 L 798


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.137    0.457 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,089,355
Number of Sequences: 37866
Number of extensions: 284704
Number of successful extensions: 1331
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 1250
Number of HSP's gapped (non-prelim): 127
length of query: 128
length of database: 18,247,518
effective HSP length: 90
effective length of query: 38
effective length of database: 14,839,578
effective search space: 563903964
effective search space used: 563903964
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press