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Search of human proteins with 239753637
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239753637 PREDICTED: similar to hCG1642465 [Homo sapiens]
(83 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753637 PREDICTED: similar to hCG1642465 [Homo sapiens] 176 5e-45
gi|42558279 tubulin, beta 8 [Homo sapiens] 107 2e-24
gi|5174735 tubulin, beta, 2 [Homo sapiens] 106 5e-24
gi|29788785 tubulin, beta [Homo sapiens] 102 9e-23
gi|21361322 tubulin, beta 4 [Homo sapiens] 101 1e-22
gi|50592996 tubulin, beta, 4 [Homo sapiens] 100 2e-22
gi|29788768 tubulin, beta 2B [Homo sapiens] 99 9e-22
gi|4507729 tubulin, beta 2 [Homo sapiens] 99 9e-22
gi|14210536 tubulin, beta 6 [Homo sapiens] 96 6e-21
gi|169178090 PREDICTED: similar to hCG1784562 [Homo sapiens] 86 8e-18
gi|169179398 PREDICTED: similar to hCG1784562 [Homo sapiens] 86 8e-18
gi|169181282 PREDICTED: similar to hCG1784562 [Homo sapiens] 86 8e-18
gi|55770868 tubulin, beta polypeptide 4, member Q [Homo sapiens] 85 1e-17
gi|13562114 beta tubulin 1, class VI [Homo sapiens] 79 8e-16
gi|239756254 PREDICTED: similar to tubulin, beta 5 [Homo sapiens] 51 2e-07
gi|239750785 PREDICTED: similar to tubulin, beta 5 [Homo sapiens] 51 2e-07
gi|169171540 PREDICTED: hypothetical protein LOC100130187 [Homo ... 50 4e-07
gi|169171964 PREDICTED: hypothetical protein LOC100130187 [Homo ... 50 4e-07
gi|169171220 PREDICTED: hypothetical protein LOC100130187 [Homo ... 50 4e-07
gi|239509039 PREDICTED: hypothetical protein LOC100130187 [Homo ... 50 4e-07
gi|169208124 PREDICTED: similar to hCG1647990 [Homo sapiens] 48 2e-06
gi|14389309 tubulin alpha 6 [Homo sapiens] 46 6e-06
gi|57013276 tubulin, alpha, ubiquitous [Homo sapiens] 46 7e-06
gi|17986283 tubulin, alpha 1a [Homo sapiens] 46 7e-06
gi|156564363 tubulin, alpha 3d [Homo sapiens] 46 7e-06
gi|17921989 tubulin, alpha 4a [Homo sapiens] 46 7e-06
gi|9507215 tubulin, alpha 8 [Homo sapiens] 46 7e-06
gi|17921993 tubulin, alpha 3c [Homo sapiens] 46 7e-06
gi|13376181 tubulin, alpha-like 3 [Homo sapiens] 44 2e-05
gi|46409270 tubulin, alpha 3e [Homo sapiens] 42 8e-05
>gi|239753637 PREDICTED: similar to hCG1642465 [Homo sapiens]
Length = 83
Score = 176 bits (445), Expect = 5e-45
Identities = 83/83 (100%), Positives = 83/83 (100%)
Query: 1 MSATFISNNTAIHELFRCILGPFMAMFRCKDFLQWYLGEGKDEIEFTEAESSMNNLVSKY 60
MSATFISNNTAIHELFRCILGPFMAMFRCKDFLQWYLGEGKDEIEFTEAESSMNNLVSKY
Sbjct: 1 MSATFISNNTAIHELFRCILGPFMAMFRCKDFLQWYLGEGKDEIEFTEAESSMNNLVSKY 60
Query: 61 QEHQDAMAKEEEIWEDWAEREVV 83
QEHQDAMAKEEEIWEDWAEREVV
Sbjct: 61 QEHQDAMAKEEEIWEDWAEREVV 83
>gi|42558279 tubulin, beta 8 [Homo sapiens]
Length = 444
Score = 107 bits (267), Expect = 2e-24
Identities = 55/82 (67%), Positives = 66/82 (80%), Gaps = 1/82 (1%)
Query: 1 MSATFISNNTAIHELFRCILGPFMAMFRCKDFLQWYLGEGKDEIEFTEAESSMNNLVSKY 60
MSATFI NNTAI ELF+ + F AMFR K FL WY GEG DE+EFTEAES+MN+LVS+Y
Sbjct: 363 MSATFIGNNTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422
Query: 61 QEHQDAMAKEEEIWEDWAEREV 82
Q++QDA A+EEE E++AE EV
Sbjct: 423 QQYQDATAEEEED-EEYAEEEV 443
>gi|5174735 tubulin, beta, 2 [Homo sapiens]
Length = 445
Score = 106 bits (264), Expect = 5e-24
Identities = 54/82 (65%), Positives = 65/82 (79%)
Query: 1 MSATFISNNTAIHELFRCILGPFMAMFRCKDFLQWYLGEGKDEIEFTEAESSMNNLVSKY 60
MSATFI N+TAI ELF+ I F AMFR K FL WY GEG DE+EFTEAES+MN+LVS+Y
Sbjct: 363 MSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422
Query: 61 QEHQDAMAKEEEIWEDWAEREV 82
Q++QDA A+EE +E+ AE EV
Sbjct: 423 QQYQDATAEEEGEFEEEAEEEV 444
>gi|29788785 tubulin, beta [Homo sapiens]
Length = 444
Score = 102 bits (253), Expect = 9e-23
Identities = 51/81 (62%), Positives = 63/81 (77%)
Query: 1 MSATFISNNTAIHELFRCILGPFMAMFRCKDFLQWYLGEGKDEIEFTEAESSMNNLVSKY 60
M+ TFI N+TAI ELF+ I F AMFR K FL WY GEG DE+EFTEAES+MN+LVS+Y
Sbjct: 363 MAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422
Query: 61 QEHQDAMAKEEEIWEDWAERE 81
Q++QDA A+EEE + + AE E
Sbjct: 423 QQYQDATAEEEEDFGEEAEEE 443
>gi|21361322 tubulin, beta 4 [Homo sapiens]
Length = 444
Score = 101 bits (252), Expect = 1e-22
Identities = 53/82 (64%), Positives = 65/82 (79%), Gaps = 1/82 (1%)
Query: 1 MSATFISNNTAIHELFRCILGPFMAMFRCKDFLQWYLGEGKDEIEFTEAESSMNNLVSKY 60
M+ATFI N+TAI ELF+ I F AMFR K FL WY GEG DE+EFTEAES+MN+LVS+Y
Sbjct: 363 MAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422
Query: 61 QEHQDAMAKEEEIWEDWAEREV 82
Q++QDA A+E E +E+ AE EV
Sbjct: 423 QQYQDATAEEGE-FEEEAEEEV 443
>gi|50592996 tubulin, beta, 4 [Homo sapiens]
Length = 450
Score = 100 bits (250), Expect = 2e-22
Identities = 51/77 (66%), Positives = 63/77 (81%), Gaps = 1/77 (1%)
Query: 1 MSATFISNNTAIHELFRCILGPFMAMFRCKDFLQWYLGEGKDEIEFTEAESSMNNLVSKY 60
MS+TFI N+TAI ELF+ I F AMFR K FL WY GEG DE+EFTEAES+MN+LVS+Y
Sbjct: 363 MSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422
Query: 61 QEHQDAMAKEE-EIWED 76
Q++QDA A+EE E++ED
Sbjct: 423 QQYQDATAEEEGEMYED 439
>gi|29788768 tubulin, beta 2B [Homo sapiens]
Length = 445
Score = 98.6 bits (244), Expect = 9e-22
Identities = 49/76 (64%), Positives = 60/76 (78%)
Query: 1 MSATFISNNTAIHELFRCILGPFMAMFRCKDFLQWYLGEGKDEIEFTEAESSMNNLVSKY 60
MSATFI N+TAI ELF+ I F AMFR K FL WY GEG DE+EFTEAES+MN+LVS+Y
Sbjct: 363 MSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422
Query: 61 QEHQDAMAKEEEIWED 76
Q++QDA A E+ +E+
Sbjct: 423 QQYQDATADEQGEFEE 438
>gi|4507729 tubulin, beta 2 [Homo sapiens]
Length = 445
Score = 98.6 bits (244), Expect = 9e-22
Identities = 49/76 (64%), Positives = 60/76 (78%)
Query: 1 MSATFISNNTAIHELFRCILGPFMAMFRCKDFLQWYLGEGKDEIEFTEAESSMNNLVSKY 60
MSATFI N+TAI ELF+ I F AMFR K FL WY GEG DE+EFTEAES+MN+LVS+Y
Sbjct: 363 MSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422
Query: 61 QEHQDAMAKEEEIWED 76
Q++QDA A E+ +E+
Sbjct: 423 QQYQDATADEQGEFEE 438
>gi|14210536 tubulin, beta 6 [Homo sapiens]
Length = 446
Score = 95.9 bits (237), Expect = 6e-21
Identities = 49/80 (61%), Positives = 62/80 (77%), Gaps = 1/80 (1%)
Query: 1 MSATFISNNTAIHELFRCILGPFMAMFRCKDFLQWYLGEGKDEIEFTEAESSMNNLVSKY 60
M++TFI N+TAI ELF+ I F AMFR K FL W+ GEG DE+EFTEAES+MN+LVS+Y
Sbjct: 363 MASTFIGNSTAIQELFKRISEQFSAMFRRKAFLHWFTGEGMDEMEFTEAESNMNDLVSEY 422
Query: 61 QEHQDAMAKE-EEIWEDWAE 79
Q++QDA A + EE +ED E
Sbjct: 423 QQYQDATANDGEEAFEDEEE 442
>gi|169178090 PREDICTED: similar to hCG1784562 [Homo sapiens]
Length = 316
Score = 85.5 bits (210), Expect = 8e-18
Identities = 42/62 (67%), Positives = 47/62 (75%), Gaps = 2/62 (3%)
Query: 1 MSATFISNNTAIHELFR--CILGPFMAMFRCKDFLQWYLGEGKDEIEFTEAESSMNNLVS 58
MS TFISNNTAI ELFR CIL F A FRCK FL WY G+G ++EF E ES+MNNLVS
Sbjct: 255 MSVTFISNNTAIQELFRFRCILEQFTAKFRCKAFLSWYSGKGMHDVEFAEVESNMNNLVS 314
Query: 59 KY 60
+Y
Sbjct: 315 EY 316
>gi|169179398 PREDICTED: similar to hCG1784562 [Homo sapiens]
Length = 316
Score = 85.5 bits (210), Expect = 8e-18
Identities = 42/62 (67%), Positives = 47/62 (75%), Gaps = 2/62 (3%)
Query: 1 MSATFISNNTAIHELFR--CILGPFMAMFRCKDFLQWYLGEGKDEIEFTEAESSMNNLVS 58
MS TFISNNTAI ELFR CIL F A FRCK FL WY G+G ++EF E ES+MNNLVS
Sbjct: 255 MSVTFISNNTAIQELFRFRCILEQFTAKFRCKAFLSWYSGKGMHDVEFAEVESNMNNLVS 314
Query: 59 KY 60
+Y
Sbjct: 315 EY 316
>gi|169181282 PREDICTED: similar to hCG1784562 [Homo sapiens]
Length = 316
Score = 85.5 bits (210), Expect = 8e-18
Identities = 42/62 (67%), Positives = 47/62 (75%), Gaps = 2/62 (3%)
Query: 1 MSATFISNNTAIHELFR--CILGPFMAMFRCKDFLQWYLGEGKDEIEFTEAESSMNNLVS 58
MS TFISNNTAI ELFR CIL F A FRCK FL WY G+G ++EF E ES+MNNLVS
Sbjct: 255 MSVTFISNNTAIQELFRFRCILEQFTAKFRCKAFLSWYSGKGMHDVEFAEVESNMNNLVS 314
Query: 59 KY 60
+Y
Sbjct: 315 EY 316
>gi|55770868 tubulin, beta polypeptide 4, member Q [Homo sapiens]
Length = 434
Score = 85.1 bits (209), Expect = 1e-17
Identities = 43/69 (62%), Positives = 52/69 (75%), Gaps = 1/69 (1%)
Query: 1 MSATFISNNTAIHELFRCILGPFMAMFRCKDFLQWYLGEGKDEIEFTEAESSMNNLVSKY 60
MS TF NNTA+ EL R + F A FR K FL WY GEG DE+EFTEAES+MN+LVS+Y
Sbjct: 363 MSVTFTGNNTAVQELKR-VSEQFTATFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 421
Query: 61 QEHQDAMAK 69
Q++QDA A+
Sbjct: 422 QQYQDATAE 430
>gi|13562114 beta tubulin 1, class VI [Homo sapiens]
Length = 451
Score = 79.0 bits (193), Expect = 8e-16
Identities = 43/84 (51%), Positives = 59/84 (70%), Gaps = 4/84 (4%)
Query: 1 MSATFISNNTAIHELFRCILGPFMAMFRCKDFLQWYLGEGKDEIEFTEAESSMNNLVSKY 60
M+ATFI NNTAI E+F + F AMF+ K F+ WY EG D EF EAE+++++LVS+Y
Sbjct: 363 MAATFIGNNTAIQEIFNRVSEHFSAMFKRKAFVHWYTSEGMDINEFGEAENNIHDLVSEY 422
Query: 61 QEHQDAMA---KEEEIWEDWAERE 81
Q+ QDA A ++EE+ E+ AE E
Sbjct: 423 QQFQDAKAVLEEDEEVTEE-AEME 445
>gi|239756254 PREDICTED: similar to tubulin, beta 5 [Homo sapiens]
Length = 365
Score = 51.2 bits (121), Expect = 2e-07
Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 1 MSATFISNNTAIHELFRCILGPFMAMFRCKDFLQWYLGEGKDEIEFTEAESSMNNLVSKY 60
M+ TF+ N+ A +L F A+ K L WY GEG +E+EF EAE++MN+ +S++
Sbjct: 293 MAVTFVGNSAATQKLSMASQ-QFPAVLCGKAVLHWYAGEGMNEMEFAEAENNMNDFISEH 351
Query: 61 QEHQDAMAKEE 71
++ + K E
Sbjct: 352 RQSRTPPQKRE 362
>gi|239750785 PREDICTED: similar to tubulin, beta 5 [Homo sapiens]
Length = 365
Score = 51.2 bits (121), Expect = 2e-07
Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 1 MSATFISNNTAIHELFRCILGPFMAMFRCKDFLQWYLGEGKDEIEFTEAESSMNNLVSKY 60
M+ TF+ N+ A +L F A+ K L WY GEG +E+EF EAE++MN+ +S++
Sbjct: 293 MAVTFVGNSAATQKLSMASQ-QFPAVLCGKAVLHWYAGEGMNEMEFAEAENNMNDFISEH 351
Query: 61 QEHQDAMAKEE 71
++ + K E
Sbjct: 352 RQSRTPPQKRE 362
>gi|169171540 PREDICTED: hypothetical protein LOC100130187 [Homo
sapiens]
Length = 98
Score = 50.1 bits (118), Expect = 4e-07
Identities = 22/44 (50%), Positives = 33/44 (75%)
Query: 39 EGKDEIEFTEAESSMNNLVSKYQEHQDAMAKEEEIWEDWAEREV 82
EG DE+EFTEA+ +MN+LV YQ++ DA A+ + +++W E EV
Sbjct: 54 EGMDEMEFTEAKCNMNDLVFAYQQYHDATAEGKGAFKEWDEEEV 97
>gi|169171964 PREDICTED: hypothetical protein LOC100130187 [Homo
sapiens]
Length = 98
Score = 50.1 bits (118), Expect = 4e-07
Identities = 22/44 (50%), Positives = 33/44 (75%)
Query: 39 EGKDEIEFTEAESSMNNLVSKYQEHQDAMAKEEEIWEDWAEREV 82
EG DE+EFTEA+ +MN+LV YQ++ DA A+ + +++W E EV
Sbjct: 54 EGMDEMEFTEAKCNMNDLVFAYQQYHDATAEGKGAFKEWDEEEV 97
>gi|169171220 PREDICTED: hypothetical protein LOC100130187 [Homo
sapiens]
Length = 98
Score = 50.1 bits (118), Expect = 4e-07
Identities = 22/44 (50%), Positives = 33/44 (75%)
Query: 39 EGKDEIEFTEAESSMNNLVSKYQEHQDAMAKEEEIWEDWAEREV 82
EG DE+EFTEA+ +MN+LV YQ++ DA A+ + +++W E EV
Sbjct: 54 EGMDEMEFTEAKCNMNDLVFAYQQYHDATAEGKGAFKEWDEEEV 97
>gi|239509039 PREDICTED: hypothetical protein LOC100130187 [Homo
sapiens]
Length = 98
Score = 50.1 bits (118), Expect = 4e-07
Identities = 22/44 (50%), Positives = 33/44 (75%)
Query: 39 EGKDEIEFTEAESSMNNLVSKYQEHQDAMAKEEEIWEDWAEREV 82
EG DE+EFTEA+ +MN+LV YQ++ DA A+ + +++W E EV
Sbjct: 54 EGMDEMEFTEAKCNMNDLVFAYQQYHDATAEGKGAFKEWDEEEV 97
>gi|169208124 PREDICTED: similar to hCG1647990 [Homo sapiens]
Length = 198
Score = 47.8 bits (112), Expect = 2e-06
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 14 ELFRCILGPFMAMFRCKDFLQWYLGEGKDEIEFTEAESSMNNLVSKYQEHQDAMAKEE 71
E + G F A+ K L WY GEG +E+EF EAE++MN+ +S++++ + K E
Sbjct: 138 EALHGLSGQFPAVLCGKAVLHWYAGEGMNEMEFAEAENNMNDFISEHRQSRTPPQKRE 195
>gi|14389309 tubulin alpha 6 [Homo sapiens]
Length = 449
Score = 46.2 bits (108), Expect = 6e-06
Identities = 25/72 (34%), Positives = 39/72 (54%)
Query: 6 ISNNTAIHELFRCILGPFMAMFRCKDFLQWYLGEGKDEIEFTEAESSMNNLVSKYQEHQD 65
+SN TA+ E + + F M+ + F+ WY+GEG +E EF+EA M L Y+E
Sbjct: 378 LSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGA 437
Query: 66 AMAKEEEIWEDW 77
A E+ E++
Sbjct: 438 DSADGEDEGEEY 449
>gi|57013276 tubulin, alpha, ubiquitous [Homo sapiens]
Length = 451
Score = 45.8 bits (107), Expect = 7e-06
Identities = 23/57 (40%), Positives = 33/57 (57%)
Query: 6 ISNNTAIHELFRCILGPFMAMFRCKDFLQWYLGEGKDEIEFTEAESSMNNLVSKYQE 62
+SN TAI E + + F M+ + F+ WY+GEG +E EF+EA M L Y+E
Sbjct: 378 LSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEE 434
>gi|17986283 tubulin, alpha 1a [Homo sapiens]
Length = 451
Score = 45.8 bits (107), Expect = 7e-06
Identities = 23/57 (40%), Positives = 33/57 (57%)
Query: 6 ISNNTAIHELFRCILGPFMAMFRCKDFLQWYLGEGKDEIEFTEAESSMNNLVSKYQE 62
+SN TAI E + + F M+ + F+ WY+GEG +E EF+EA M L Y+E
Sbjct: 378 LSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEE 434
>gi|156564363 tubulin, alpha 3d [Homo sapiens]
Length = 450
Score = 45.8 bits (107), Expect = 7e-06
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 6 ISNNTAIHELFRCILGPFMAMFRCKDFLQWYLGEGKDEIEFTEAESSMNNLVSKYQE-HQ 64
+SN TAI E + + F M+ + F+ WY+GEG +E EF+EA + L Y+E
Sbjct: 378 LSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGV 437
Query: 65 DAMAKEEEIWEDW 77
D++ E E E++
Sbjct: 438 DSVEAEAEEGEEY 450
>gi|17921989 tubulin, alpha 4a [Homo sapiens]
Length = 448
Score = 45.8 bits (107), Expect = 7e-06
Identities = 23/57 (40%), Positives = 33/57 (57%)
Query: 6 ISNNTAIHELFRCILGPFMAMFRCKDFLQWYLGEGKDEIEFTEAESSMNNLVSKYQE 62
+SN TAI E + + F M+ + F+ WY+GEG +E EF+EA M L Y+E
Sbjct: 378 LSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEE 434
>gi|9507215 tubulin, alpha 8 [Homo sapiens]
Length = 449
Score = 45.8 bits (107), Expect = 7e-06
Identities = 25/72 (34%), Positives = 39/72 (54%)
Query: 6 ISNNTAIHELFRCILGPFMAMFRCKDFLQWYLGEGKDEIEFTEAESSMNNLVSKYQEHQD 65
+SN TAI E + + F M+ + F+ WY+GEG +E EF+EA + L Y+E
Sbjct: 378 LSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGT 437
Query: 66 AMAKEEEIWEDW 77
+EE E++
Sbjct: 438 DSFEEENEGEEF 449
>gi|17921993 tubulin, alpha 3c [Homo sapiens]
Length = 450
Score = 45.8 bits (107), Expect = 7e-06
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 6 ISNNTAIHELFRCILGPFMAMFRCKDFLQWYLGEGKDEIEFTEAESSMNNLVSKYQE-HQ 64
+SN TAI E + + F M+ + F+ WY+GEG +E EF+EA + L Y+E
Sbjct: 378 LSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGV 437
Query: 65 DAMAKEEEIWEDW 77
D++ E E E++
Sbjct: 438 DSVEAEAEEGEEY 450
>gi|13376181 tubulin, alpha-like 3 [Homo sapiens]
Length = 446
Score = 44.3 bits (103), Expect = 2e-05
Identities = 24/61 (39%), Positives = 32/61 (52%)
Query: 2 SATFISNNTAIHELFRCILGPFMAMFRCKDFLQWYLGEGKDEIEFTEAESSMNNLVSKYQ 61
S +SN TAI E + + F M+ + FL WYL EG +E EF EA + L Y+
Sbjct: 381 SICMLSNTTAIVEAWARLDHKFDLMYAKRAFLHWYLREGMEEAEFLEAREDLAALERDYE 440
Query: 62 E 62
E
Sbjct: 441 E 441
>gi|46409270 tubulin, alpha 3e [Homo sapiens]
Length = 450
Score = 42.4 bits (98), Expect = 8e-05
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 6 ISNNTAIHELFRCILGPFMAMFRCKDFLQWYLGEGKDEIEFTEAESSMNNLVSKYQE-HQ 64
+SN TAI E + ++ F M+ F+ WY+GEG +E EF+EA + L +E
Sbjct: 378 LSNTTAIAEAWARLVHKFDLMYAKWAFVHWYVGEGMEEGEFSEAREDLAALEKDCEEVGV 437
Query: 65 DAMAKEEEIWEDW 77
D++ E E E++
Sbjct: 438 DSVEAEAEEGEEY 450
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.132 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,049,102
Number of Sequences: 37866
Number of extensions: 100641
Number of successful extensions: 399
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 358
Number of HSP's gapped (non-prelim): 42
length of query: 83
length of database: 18,247,518
effective HSP length: 55
effective length of query: 28
effective length of database: 16,164,888
effective search space: 452616864
effective search space used: 452616864
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.