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Search of human proteins with 239753508
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239753508 PREDICTED: hypothetical protein [Homo sapiens]
(123 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753508 PREDICTED: hypothetical protein [Homo sapiens] 263 2e-71
gi|239748157 PREDICTED: hypothetical protein [Homo sapiens] 253 3e-68
gi|239742055 PREDICTED: hypothetical protein XP_002342401 [Homo ... 253 3e-68
gi|88759346 GATA zinc finger domain containing 1 [Homo sapiens] 37 0.004
gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma... 36 0.008
gi|12056465 fibrillarin [Homo sapiens] 35 0.011
gi|13994190 frizzled 8 [Homo sapiens] 35 0.011
gi|38788260 bromodomain PHD finger transcription factor isoform ... 35 0.014
gi|38788274 bromodomain PHD finger transcription factor isoform ... 35 0.014
gi|223633890 hypothetical protein LOC729956 [Homo sapiens] 34 0.024
gi|23510368 homeobox D11 [Homo sapiens] 34 0.024
gi|73427806 v-maf musculoaponeurotic fibrosarcoma oncogene homol... 34 0.024
gi|5453736 v-maf musculoaponeurotic fibrosarcoma oncogene homolo... 34 0.024
gi|167830436 DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 2... 34 0.024
gi|167830433 DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 1... 34 0.024
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 34 0.024
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 34 0.024
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 34 0.024
gi|169166558 PREDICTED: similar to hCG18094 [Homo sapiens] 34 0.032
gi|169167297 PREDICTED: similar to hCG18094 [Homo sapiens] 34 0.032
gi|169166473 PREDICTED: similar to hCG18094 [Homo sapiens] 34 0.032
gi|239741128 PREDICTED: hypothetical protein XP_002342116 [Homo ... 34 0.032
gi|126116581 retina and anterior neural fold homeobox [Homo sapi... 34 0.032
gi|109452587 family with sequence similarity 98, member B isofor... 34 0.032
gi|27436971 potassium voltage-gated channel, shaker-related subf... 34 0.032
gi|46447823 nuclear factor of activated T-cells, cytoplasmic, ca... 34 0.032
gi|4507163 SRY (sex determining region Y)-box 4 [Homo sapiens] 33 0.042
gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo ... 33 0.042
gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo ... 33 0.042
gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo ... 33 0.042
>gi|239753508 PREDICTED: hypothetical protein [Homo sapiens]
Length = 123
Score = 263 bits (672), Expect = 2e-71
Identities = 123/123 (100%), Positives = 123/123 (100%)
Query: 1 MAGEAAHLLVWRPGPRGGRAGRREAGGPGHNGGGGRARWAAAARTPALGGGGGSVELAAD 60
MAGEAAHLLVWRPGPRGGRAGRREAGGPGHNGGGGRARWAAAARTPALGGGGGSVELAAD
Sbjct: 1 MAGEAAHLLVWRPGPRGGRAGRREAGGPGHNGGGGRARWAAAARTPALGGGGGSVELAAD 60
Query: 61 FHAILCPANRLTDRGDASPPPTPQPFWPTALLSPSLSPDSSFPWCSQKEEKKKRKKERKK 120
FHAILCPANRLTDRGDASPPPTPQPFWPTALLSPSLSPDSSFPWCSQKEEKKKRKKERKK
Sbjct: 61 FHAILCPANRLTDRGDASPPPTPQPFWPTALLSPSLSPDSSFPWCSQKEEKKKRKKERKK 120
Query: 121 KVL 123
KVL
Sbjct: 121 KVL 123
>gi|239748157 PREDICTED: hypothetical protein [Homo sapiens]
Length = 128
Score = 253 bits (645), Expect = 3e-68
Identities = 116/121 (95%), Positives = 120/121 (99%)
Query: 1 MAGEAAHLLVWRPGPRGGRAGRREAGGPGHNGGGGRARWAAAARTPALGGGGGSVELAAD 60
MAGEAAHLLVWRPGPRGGRAGRREAGGPGHNGGGGRARWAAAARTPALGGGGGSVELAAD
Sbjct: 1 MAGEAAHLLVWRPGPRGGRAGRREAGGPGHNGGGGRARWAAAARTPALGGGGGSVELAAD 60
Query: 61 FHAILCPANRLTDRGDASPPPTPQPFWPTALLSPSLSPDSSFPWCSQKEEKKKRKKERKK 120
FHAILCPANRLTDRGDASPPPTPQPFWPTALLSPSLSPDSSFPWCSQKEEKKK+K+ +K+
Sbjct: 61 FHAILCPANRLTDRGDASPPPTPQPFWPTALLSPSLSPDSSFPWCSQKEEKKKKKERKKE 120
Query: 121 K 121
K
Sbjct: 121 K 121
>gi|239742055 PREDICTED: hypothetical protein XP_002342401 [Homo
sapiens]
Length = 128
Score = 253 bits (645), Expect = 3e-68
Identities = 116/121 (95%), Positives = 120/121 (99%)
Query: 1 MAGEAAHLLVWRPGPRGGRAGRREAGGPGHNGGGGRARWAAAARTPALGGGGGSVELAAD 60
MAGEAAHLLVWRPGPRGGRAGRREAGGPGHNGGGGRARWAAAARTPALGGGGGSVELAAD
Sbjct: 1 MAGEAAHLLVWRPGPRGGRAGRREAGGPGHNGGGGRARWAAAARTPALGGGGGSVELAAD 60
Query: 61 FHAILCPANRLTDRGDASPPPTPQPFWPTALLSPSLSPDSSFPWCSQKEEKKKRKKERKK 120
FHAILCPANRLTDRGDASPPPTPQPFWPTALLSPSLSPDSSFPWCSQKEEKKK+K+ +K+
Sbjct: 61 FHAILCPANRLTDRGDASPPPTPQPFWPTALLSPSLSPDSSFPWCSQKEEKKKKKERKKE 120
Query: 121 K 121
K
Sbjct: 121 K 121
>gi|88759346 GATA zinc finger domain containing 1 [Homo sapiens]
Length = 269
Score = 37.0 bits (84), Expect = 0.004
Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 7 HLLVWRPGPRGGRAGRREAGGPGHNGGGG--RARWAAAARTPAL-GGGGGSVELAADFH 62
H R G G AG AGG G +GGGG A +A+ + TP GGGG + + H
Sbjct: 31 HHCTGRGGAGSGGAGSGAAGGTGGSGGGGFGAATFASTSATPPQSNGGGGGKQSKQEIH 89
>gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma)
[Homo sapiens]
Length = 526
Score = 35.8 bits (81), Expect = 0.008
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 9/75 (12%)
Query: 16 RGGRAGRREAGGPGHNGGGGRARWAAAARTPALGGGGGSVELAADFHA--ILCPANRLTD 73
RGG GR GG G +GGGGR + P+ GGGGG + A D+ C +
Sbjct: 388 RGGPMGRGGYGGGG-SGGGGRGGF------PSGGGGGGGQQRAGDWKCPNPTCENMNFSW 440
Query: 74 RGDASPPPTPQPFWP 88
R + + P+P P
Sbjct: 441 RNECNQCKAPKPDGP 455
Score = 31.6 bits (70), Expect = 0.16
Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 16 RGGRAGRREAGGPGHNGGGGRARWAAAARTPALGGGGG 53
RGGR GR +GG G GGGG R + GGG G
Sbjct: 213 RGGR-GRGGSGGGGGGGGGGYNRSSGGYEPRGRGGGRG 249
Score = 29.6 bits (65), Expect = 0.60
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 14 GPRGGRAGRREAGGPGHNGGGGRARWAAAARTPALGGGGG 53
G GG G ++ G G +GG G+ R + GGGGG
Sbjct: 188 GGSGGGYGNQDQSGGGGSGGYGQQDRGGRGRGGSGGGGGG 227
Score = 26.9 bits (58), Expect = 3.9
Identities = 14/40 (35%), Positives = 18/40 (45%)
Query: 14 GPRGGRAGRREAGGPGHNGGGGRARWAAAARTPALGGGGG 53
G GG + ++GG G G G + R GGGGG
Sbjct: 189 GSGGGYGNQDQSGGGGSGGYGQQDRGGRGRGGSGGGGGGG 228
>gi|12056465 fibrillarin [Homo sapiens]
Length = 321
Score = 35.4 bits (80), Expect = 0.011
Identities = 19/40 (47%), Positives = 19/40 (47%)
Query: 14 GPRGGRAGRREAGGPGHNGGGGRARWAAAARTPALGGGGG 53
G RGGR GR GG GGG R R GGGGG
Sbjct: 19 GDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGG 58
Score = 32.7 bits (73), Expect = 0.071
Identities = 21/44 (47%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 12 RPGPRGGRAGRREAGGPGHNGG--GGRARWAAAARTPALGGGGG 53
R G GGR G + GG G GG GGR R R GGGGG
Sbjct: 8 RGGGFGGRGGFGDRGGRGGRGGFGGGRGR-GGGFRGRGRGGGGG 50
Score = 28.9 bits (63), Expect = 1.0
Identities = 17/39 (43%), Positives = 17/39 (43%), Gaps = 10/39 (25%)
Query: 14 GPRGGRAGRREAGGPGHNGGGGRARWAAAARTPALGGGG 52
G GG GR GG G GGGG R GGGG
Sbjct: 35 GRGGGFRGRGRGGGGGGGGGGGGGR----------GGGG 63
Score = 28.1 bits (61), Expect = 1.8
Identities = 20/54 (37%), Positives = 21/54 (38%), Gaps = 16/54 (29%)
Query: 14 GPRGGRAGRREAG----GPGHNGGGGRARWAAAARTPALGGGGGSVELAADFHA 63
G RGG G R G G G GGGG GGGGG FH+
Sbjct: 25 GGRGGFGGGRGRGGGFRGRGRGGGGGG------------GGGGGGGRGGGGFHS 66
>gi|13994190 frizzled 8 [Homo sapiens]
Length = 694
Score = 35.4 bits (80), Expect = 0.011
Identities = 18/39 (46%), Positives = 18/39 (46%)
Query: 15 PRGGRAGRREAGGPGHNGGGGRARWAAAARTPALGGGGG 53
P G GR P H GGG AA PA GGGGG
Sbjct: 177 PSGSGHGRPPGARPPHRGGGRGGGGGDAAAPPARGGGGG 215
Score = 30.4 bits (67), Expect = 0.35
Identities = 18/39 (46%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 17 GGRAGRREAGGPGHNGGGGRARWAAAARTPALGGGGGSV 55
GG AG AGG G GGGG GGGGGS+
Sbjct: 630 GGGAGATAAGGGGGPGGGGGGGPGGGG---GPGGGGGSL 665
Score = 26.2 bits (56), Expect = 6.7
Identities = 15/39 (38%), Positives = 16/39 (41%)
Query: 12 RPGPRGGRAGRREAGGPGHNGGGGRARWAAAARTPALGG 50
R G RGG G A GGGG+AR P G
Sbjct: 193 RGGGRGGGGGDAAAPPARGGGGGGKARPPGGGAAPCEPG 231
Score = 25.8 bits (55), Expect = 8.7
Identities = 18/43 (41%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 17 GGRAGRREAGGPGHNGGGGRARWAAAARTPALGGGGGSVELAA 59
GG G AGG G GG AA A GG G EL A
Sbjct: 342 GGAPG---AGGAGGAGGAAAGAGAAGAGAGGPGGRGEYEELGA 381
>gi|38788260 bromodomain PHD finger transcription factor isoform 2
[Homo sapiens]
Length = 2903
Score = 35.0 bits (79), Expect = 0.014
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 63 AILCPANRLTDRGDASPPPTPQPFWPTALLSPSLSPDSSFPWCSQK----EEKKKRKKER 118
A+ P +T A P P P P P A+ L + P SQK EEK K +
Sbjct: 2648 AVAAPCPPVTPAPPAPPAPPPSPPPPPAVQHTGLLSTPTLPAASQKRKREEEKDSSSKSK 2707
Query: 119 KKKVL 123
KKK++
Sbjct: 2708 KKKMI 2712
Score = 26.6 bits (57), Expect = 5.1
Identities = 16/31 (51%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 14 GPRGGRAGRREAGGPGHNGGGGRARWAAAAR 44
G RGG GR GG GGG AR AA R
Sbjct: 93 GGRGGGGGRTGGGG----GGGHLARTTAARR 119
>gi|38788274 bromodomain PHD finger transcription factor isoform 1
[Homo sapiens]
Length = 2920
Score = 35.0 bits (79), Expect = 0.014
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 63 AILCPANRLTDRGDASPPPTPQPFWPTALLSPSLSPDSSFPWCSQK----EEKKKRKKER 118
A+ P +T A P P P P P A+ L + P SQK EEK K +
Sbjct: 2665 AVAAPCPPVTPAPPAPPAPPPSPPPPPAVQHTGLLSTPTLPAASQKRKREEEKDSSSKSK 2724
Query: 119 KKKVL 123
KKK++
Sbjct: 2725 KKKMI 2729
Score = 26.6 bits (57), Expect = 5.1
Identities = 16/31 (51%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 14 GPRGGRAGRREAGGPGHNGGGGRARWAAAAR 44
G RGG GR GG GGG AR AA R
Sbjct: 93 GGRGGGGGRTGGGG----GGGHLARTTAARR 119
>gi|223633890 hypothetical protein LOC729956 [Homo sapiens]
Length = 538
Score = 34.3 bits (77), Expect = 0.024
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 13 PGPRGGRAGRREAGGPGHNGGGGRARWAAAARTPALGGGGG 53
P P G AG AGG G G G+A W RT GG GG
Sbjct: 140 PPPLAGGAGG--AGGAGGGPGPGQAGWLEGGRTGGAGGRGG 178
>gi|23510368 homeobox D11 [Homo sapiens]
Length = 338
Score = 34.3 bits (77), Expect = 0.024
Identities = 29/74 (39%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 11 WRPGPRGGRAGRREAGG-PGHNGG--GGRARWAAAARTPALGGGGGSVELAADFHAILCP 67
+R G GG AG +GG PG GG GG A + AAA A + E AA +L P
Sbjct: 75 YRGGGGGGSAGGGSSGGGPGGGGGGAGGYAPYYAAA--AAAAAAAAAAEEAAMQRELLPP 132
Query: 68 ANRLTDRGDASPPP 81
A R D +P P
Sbjct: 133 AGRRPDVLFKAPEP 146
>gi|73427806 v-maf musculoaponeurotic fibrosarcoma oncogene homolog
isoform b [Homo sapiens]
Length = 373
Score = 34.3 bits (77), Expect = 0.024
Identities = 22/61 (36%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Query: 2 AGEAAHLLVWRPGPRGGRAGRREAGGPGHNGGGGRARWAAAARTPALGGGGGSVELAADF 61
AG H PG G A AGG G GGGG A GGGGG+
Sbjct: 189 AGHHHHPTAGAPGAAGSAAA--SAGGAGGAGGGGPASAGGGGGGGGGGGGGGAAGAGGAL 246
Query: 62 H 62
H
Sbjct: 247 H 247
Score = 29.3 bits (64), Expect = 0.79
Identities = 16/36 (44%), Positives = 16/36 (44%)
Query: 17 GGRAGRREAGGPGHNGGGGRARWAAAARTPALGGGG 52
GG A GG G GGGG A A A P GG
Sbjct: 219 GGPASAGGGGGGGGGGGGGGAAGAGGALHPHHAAGG 254
>gi|5453736 v-maf musculoaponeurotic fibrosarcoma oncogene homolog
isoform a [Homo sapiens]
Length = 403
Score = 34.3 bits (77), Expect = 0.024
Identities = 22/61 (36%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Query: 2 AGEAAHLLVWRPGPRGGRAGRREAGGPGHNGGGGRARWAAAARTPALGGGGGSVELAADF 61
AG H PG G A AGG G GGGG A GGGGG+
Sbjct: 189 AGHHHHPTAGAPGAAGSAAA--SAGGAGGAGGGGPASAGGGGGGGGGGGGGGAAGAGGAL 246
Query: 62 H 62
H
Sbjct: 247 H 247
Score = 29.3 bits (64), Expect = 0.79
Identities = 16/36 (44%), Positives = 16/36 (44%)
Query: 17 GGRAGRREAGGPGHNGGGGRARWAAAARTPALGGGG 52
GG A GG G GGGG A A A P GG
Sbjct: 219 GGPASAGGGGGGGGGGGGGGAAGAGGALHPHHAAGG 254
>gi|167830436 DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 2
[Homo sapiens]
Length = 994
Score = 34.3 bits (77), Expect = 0.024
Identities = 14/23 (60%), Positives = 15/23 (65%)
Query: 14 GPRGGRAGRREAGGPGHNGGGGR 36
GP GG G R +GG G GGGGR
Sbjct: 25 GPAGGHGGNRGSGGGGGGGGGGR 47
>gi|167830433 DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 1
[Homo sapiens]
Length = 1008
Score = 34.3 bits (77), Expect = 0.024
Identities = 14/23 (60%), Positives = 15/23 (65%)
Query: 14 GPRGGRAGRREAGGPGHNGGGGR 36
GP GG G R +GG G GGGGR
Sbjct: 25 GPAGGHGGNRGSGGGGGGGGGGR 47
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 34.3 bits (77), Expect = 0.024
Identities = 19/40 (47%), Positives = 19/40 (47%)
Query: 14 GPRGGRAGRREAGGPGHNGGGGRARWAAAARTPALGGGGG 53
G GG G GG G G G A AAAA A GGGG
Sbjct: 257 GGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGG 296
Score = 33.1 bits (74), Expect = 0.054
Identities = 24/69 (34%), Positives = 27/69 (39%), Gaps = 13/69 (18%)
Query: 12 RPGPRGGRAGRREAGGPGHNGGGG-------------RARWAAAARTPALGGGGGSVELA 58
RPG GG G GG GGGG A AAAA GGGGG +
Sbjct: 245 RPGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSS 304
Query: 59 ADFHAILCP 67
A + + P
Sbjct: 305 AGYGVLSSP 313
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 34.3 bits (77), Expect = 0.024
Identities = 19/40 (47%), Positives = 19/40 (47%)
Query: 14 GPRGGRAGRREAGGPGHNGGGGRARWAAAARTPALGGGGG 53
G GG G GG G G G A AAAA A GGGG
Sbjct: 257 GGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGG 296
Score = 33.1 bits (74), Expect = 0.054
Identities = 24/69 (34%), Positives = 27/69 (39%), Gaps = 13/69 (18%)
Query: 12 RPGPRGGRAGRREAGGPGHNGGGG-------------RARWAAAARTPALGGGGGSVELA 58
RPG GG G GG GGGG A AAAA GGGGG +
Sbjct: 245 RPGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSS 304
Query: 59 ADFHAILCP 67
A + + P
Sbjct: 305 AGYGVLSSP 313
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 34.3 bits (77), Expect = 0.024
Identities = 19/40 (47%), Positives = 19/40 (47%)
Query: 14 GPRGGRAGRREAGGPGHNGGGGRARWAAAARTPALGGGGG 53
G GG G GG G G G A AAAA A GGGG
Sbjct: 257 GGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGG 296
Score = 33.1 bits (74), Expect = 0.054
Identities = 24/69 (34%), Positives = 27/69 (39%), Gaps = 13/69 (18%)
Query: 12 RPGPRGGRAGRREAGGPGHNGGGG-------------RARWAAAARTPALGGGGGSVELA 58
RPG GG G GG GGGG A AAAA GGGGG +
Sbjct: 245 RPGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSS 304
Query: 59 ADFHAILCP 67
A + + P
Sbjct: 305 AGYGVLSSP 313
>gi|169166558 PREDICTED: similar to hCG18094 [Homo sapiens]
Length = 459
Score = 33.9 bits (76), Expect = 0.032
Identities = 20/44 (45%), Positives = 20/44 (45%)
Query: 17 GGRAGRREAGGPGHNGGGGRARWAAAARTPALGGGGGSVELAAD 60
G RA R G PG G R R AA A GGGG V AD
Sbjct: 372 GWRARRAGTGVPGRGWRGDRVRSAAGRYAAAGAGGGGGVPARAD 415
>gi|169167297 PREDICTED: similar to hCG18094 [Homo sapiens]
Length = 459
Score = 33.9 bits (76), Expect = 0.032
Identities = 20/44 (45%), Positives = 20/44 (45%)
Query: 17 GGRAGRREAGGPGHNGGGGRARWAAAARTPALGGGGGSVELAAD 60
G RA R G PG G R R AA A GGGG V AD
Sbjct: 372 GWRARRAGTGVPGRGWRGDRVRSAAGRYAAAGAGGGGGVPARAD 415
>gi|169166473 PREDICTED: similar to hCG18094 [Homo sapiens]
Length = 459
Score = 33.9 bits (76), Expect = 0.032
Identities = 20/44 (45%), Positives = 20/44 (45%)
Query: 17 GGRAGRREAGGPGHNGGGGRARWAAAARTPALGGGGGSVELAAD 60
G RA R G PG G R R AA A GGGG V AD
Sbjct: 372 GWRARRAGTGVPGRGWRGDRVRSAAGRYAAAGAGGGGGVPARAD 415
>gi|239741128 PREDICTED: hypothetical protein XP_002342116 [Homo
sapiens]
Length = 132
Score = 33.9 bits (76), Expect = 0.032
Identities = 27/76 (35%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Query: 19 RAGRREAGGPGHNGGGGRARWAAAARTPALGGGGGSVELAADFHAILCPANRLTDRGDAS 78
R+GRRE G G G G RA +AA P G G E AA A C A
Sbjct: 28 RSGRRERGARGAGGAGNRAPRPSAA--PTCGPGQAGAERAAG-EAADCRRTVWASGSAAP 84
Query: 79 PPPTPQPFWPTALLSP 94
PP + AL+ P
Sbjct: 85 TPPRGRVTLSPALIQP 100
>gi|126116581 retina and anterior neural fold homeobox [Homo
sapiens]
Length = 346
Score = 33.9 bits (76), Expect = 0.032
Identities = 25/74 (33%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Query: 27 GPGHNGG--GGRARWAAAARTPALGGGGGSVELAADFHAILCPANRLTDRGDASPPPTPQ 84
GPG GG GG + P GGG +++ F PA L +PPP P
Sbjct: 227 GPGSGGGPAGGALPLESWLGPPLPGGGATALQSLPGFGP---PAQSLP--ASYTPPPPPP 281
Query: 85 PFWPTALLSPSLSP 98
PF + L P L P
Sbjct: 282 PFLNSPPLGPGLQP 295
>gi|109452587 family with sequence similarity 98, member B isoform 1
[Homo sapiens]
Length = 433
Score = 33.9 bits (76), Expect = 0.032
Identities = 19/41 (46%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 14 GPRGGRAGRREAGGPGHNGGG-GRARWAAAARTPALGGGGG 53
G RGG G GG G GGG GR W GGGGG
Sbjct: 333 GGRGGWGGGGGGGGRGGGGGGGGRGGWGGGGGGWGGGGGGG 373
Score = 32.3 bits (72), Expect = 0.093
Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 11 WRPGPRGGRAGRREAGGPGHNGG-GGRARWAAAARTPALGGGGG 53
W G GGR G + G G GG GGR + GGGGG
Sbjct: 376 WGGGGGGGRGGFQGRGDYGGRGGYGGRGGYGGRGYGDPYGGGGG 419
Score = 31.2 bits (69), Expect = 0.21
Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 7/53 (13%)
Query: 8 LLVWRPGPRGGRAGRREAGGPG-------HNGGGGRARWAAAARTPALGGGGG 53
+L+ R RGGR E P GGGGR W GGGGG
Sbjct: 300 VLMGRVPDRGGRPNEIEPPPPEMPPWQKRQEGGGGRGGWGGGGGGGGRGGGGG 352
Score = 30.8 bits (68), Expect = 0.27
Identities = 17/40 (42%), Positives = 17/40 (42%)
Query: 14 GPRGGRAGRREAGGPGHNGGGGRARWAAAARTPALGGGGG 53
G GGR G GG G GGGG GGGGG
Sbjct: 342 GGGGGRGGGGGGGGRGGWGGGGGGWGGGGGGGGGWGGGGG 381
Score = 29.6 bits (65), Expect = 0.60
Identities = 18/42 (42%), Positives = 18/42 (42%), Gaps = 7/42 (16%)
Query: 14 GPRGGRAGRREAGGPGHNGG--GGRARWAAAARTPALGGGGG 53
G GG GR GG G GG GG W GGGGG
Sbjct: 339 GGGGGGGGRGGGGGGGGRGGWGGGGGGWGGGG-----GGGGG 375
Score = 28.9 bits (63), Expect = 1.0
Identities = 18/43 (41%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 11 WRPGPRGGRAGRREAGGPGHNGGGGRARWAAAARTPALGGGGG 53
W+ GG GR GG G GGGGR GGGGG
Sbjct: 325 WQKRQEGG-GGRGGWGGGG--GGGGRGGGGGGGGRGGWGGGGG 364
Score = 28.5 bits (62), Expect = 1.3
Identities = 16/43 (37%), Positives = 17/43 (39%)
Query: 11 WRPGPRGGRAGRREAGGPGHNGGGGRARWAAAARTPALGGGGG 53
W G G G GG G GGGGR + GG GG
Sbjct: 359 WGGGGGGWGGGGGGGGGWGGGGGGGRGGFQGRGDYGGRGGYGG 401
Score = 26.2 bits (56), Expect = 6.7
Identities = 18/43 (41%), Positives = 18/43 (41%), Gaps = 16/43 (37%)
Query: 14 GPRGGRAGRREA---GGPGHNGGGGRARWAAAARTPALGGGGG 53
G RGG GR GG G GGGG GGGGG
Sbjct: 400 GGRGGYGGRGYGDPYGGGGGGGGGG-------------GGGGG 429
>gi|27436971 potassium voltage-gated channel, shaker-related
subfamily, beta member 3 [Homo sapiens]
Length = 404
Score = 33.9 bits (76), Expect = 0.032
Identities = 21/44 (47%), Positives = 22/44 (50%), Gaps = 7/44 (15%)
Query: 12 RPGPRGGRAGRREAGG-----PGHNGGGGRARWAAAARTPALGG 50
RPGP GG G AGG PG G G +AR A R PA G
Sbjct: 25 RPGPGGGNGG--PAGGGHGNPPGGGGSGPKARAALVPRPPAPAG 66
>gi|46447823 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 2 interacting protein [Homo
sapiens]
Length = 419
Score = 33.9 bits (76), Expect = 0.032
Identities = 26/76 (34%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Query: 14 GPRGGRAGRREAGGPGHNGGGGRARWAAAARTPALGG-GGGSVELAADFHAIL---CPAN 69
G RG +G AG G G GGR R A R+P+ G SV+L D + A
Sbjct: 6 GKRGRWSGGSGAGRGGRGGWGGRGRRPRAQRSPSRGTLDVVSVDLVTDSDEEILEVATAR 65
Query: 70 RLTDRGDASPPPTPQP 85
D + PP P P
Sbjct: 66 GAADEVEVEPPEPPGP 81
>gi|4507163 SRY (sex determining region Y)-box 4 [Homo sapiens]
Length = 474
Score = 33.5 bits (75), Expect = 0.042
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 8/43 (18%)
Query: 12 RPGPRGGRAGRREAGGPGHNGGGGRARWAAAARTPALGGGGGS 54
+PG +G + G +GG GH GGGG + A GGGGG+
Sbjct: 150 KPGEKGDKVGG--SGGGGHGGGGG------GGSSNAGGGGGGA 184
>gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo
sapiens]
Length = 355
Score = 33.5 bits (75), Expect = 0.042
Identities = 33/94 (35%), Positives = 40/94 (42%), Gaps = 10/94 (10%)
Query: 12 RPGPRGGRAGRREAGG-PGHNGGGGRARWAAAARTPALGGGGGSVELAADFHAI-LCPAN 69
RP P G R+AG PG G A +AAR PA GGSV AA + L P
Sbjct: 196 RPEPGPHHTGARQAGPLPGTRGRTRAAGTGSAARGPARHLRGGSVAAAAAARCLGLSPPG 255
Query: 70 R---LTDRGDASPPPTPQPFWPTALLSPSLSPDS 100
R + R + PP P P+LSP +
Sbjct: 256 RSRLFSPRSSLARPPLRFP-----PARPALSPSA 284
>gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo
sapiens]
Length = 355
Score = 33.5 bits (75), Expect = 0.042
Identities = 33/94 (35%), Positives = 40/94 (42%), Gaps = 10/94 (10%)
Query: 12 RPGPRGGRAGRREAGG-PGHNGGGGRARWAAAARTPALGGGGGSVELAADFHAI-LCPAN 69
RP P G R+AG PG G A +AAR PA GGSV AA + L P
Sbjct: 196 RPEPGPHHTGARQAGPLPGTRGRTRAAGTGSAARGPARHLRGGSVAAAAAARCLGLSPPG 255
Query: 70 R---LTDRGDASPPPTPQPFWPTALLSPSLSPDS 100
R + R + PP P P+LSP +
Sbjct: 256 RSRLFSPRSSLARPPLRFP-----PARPALSPSA 284
>gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo
sapiens]
Length = 355
Score = 33.5 bits (75), Expect = 0.042
Identities = 33/94 (35%), Positives = 40/94 (42%), Gaps = 10/94 (10%)
Query: 12 RPGPRGGRAGRREAGG-PGHNGGGGRARWAAAARTPALGGGGGSVELAADFHAI-LCPAN 69
RP P G R+AG PG G A +AAR PA GGSV AA + L P
Sbjct: 196 RPEPGPHHTGARQAGPLPGTRGRTRAAGTGSAARGPARHLRGGSVAAAAAARCLGLSPPG 255
Query: 70 R---LTDRGDASPPPTPQPFWPTALLSPSLSPDS 100
R + R + PP P P+LSP +
Sbjct: 256 RSRLFSPRSSLARPPLRFP-----PARPALSPSA 284
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.135 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,290,707
Number of Sequences: 37866
Number of extensions: 465119
Number of successful extensions: 6491
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 378
Number of HSP's that attempted gapping in prelim test: 3976
Number of HSP's gapped (non-prelim): 2436
length of query: 123
length of database: 18,247,518
effective HSP length: 89
effective length of query: 34
effective length of database: 14,877,444
effective search space: 505833096
effective search space used: 505833096
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.