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Search of human proteins with 239753461
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239753461 PREDICTED: hypothetical protein XP_002345664 [Homo
sapiens]
(114 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753461 PREDICTED: hypothetical protein XP_002345664 [Homo ... 228 1e-60
gi|239748051 PREDICTED: hypothetical protein XP_002346521 [Homo ... 36 0.008
gi|239741944 PREDICTED: hypothetical protein XP_002342359 [Homo ... 36 0.008
gi|239753500 PREDICTED: hypothetical protein [Homo sapiens] 35 0.013
gi|21040326 SON DNA-binding protein isoform F [Homo sapiens] 32 0.083
gi|21040314 SON DNA-binding protein isoform B [Homo sapiens] 32 0.083
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 32 0.083
gi|132626688 mediator of DNA-damage checkpoint 1 [Homo sapiens] 32 0.11
gi|239756584 PREDICTED: hypothetical protein [Homo sapiens] 32 0.11
gi|239751076 PREDICTED: hypothetical protein [Homo sapiens] 32 0.11
gi|239745563 PREDICTED: hypothetical protein [Homo sapiens] 32 0.11
gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo ... 32 0.14
gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo ... 32 0.14
gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo ... 32 0.14
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 32 0.14
gi|71274109 nuclear factor of kappa light polypeptide gene enhan... 31 0.24
gi|13129104 coiled-coil domain containing 86 [Homo sapiens] 31 0.24
gi|21327710 nucleosome assembly protein 1-like 3 [Homo sapiens] 30 0.41
gi|148806908 fibronectin type III domain containing 1 [Homo sapi... 30 0.41
gi|239755861 PREDICTED: hypothetical protein [Homo sapiens] 30 0.54
gi|169211906 PREDICTED: hypothetical protein [Homo sapiens] 30 0.54
gi|239750357 PREDICTED: hypothetical protein XP_002347380 [Homo ... 30 0.54
gi|239747320 PREDICTED: forkhead box protein O6 [Homo sapiens] 30 0.54
gi|169211049 PREDICTED: hypothetical protein [Homo sapiens] 30 0.54
gi|239744661 PREDICTED: hypothetical protein XP_002343218 [Homo ... 30 0.54
gi|154354972 phosphatase and actin regulator 2 isoform 4 [Homo s... 30 0.54
gi|154354970 phosphatase and actin regulator 2 isoform 2 [Homo s... 30 0.54
gi|58761548 tau tubulin kinase 1 [Homo sapiens] 30 0.54
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] 30 0.54
gi|210032580 SET domain containing 1B [Homo sapiens] 30 0.54
>gi|239753461 PREDICTED: hypothetical protein XP_002345664 [Homo
sapiens]
Length = 114
Score = 228 bits (580), Expect = 1e-60
Identities = 114/114 (100%), Positives = 114/114 (100%)
Query: 1 MSTPLSDSKWLKISTETIAPTSSKLPPTHTSTGTVRAGSQTFKRRASPARSHEPGNPQVE 60
MSTPLSDSKWLKISTETIAPTSSKLPPTHTSTGTVRAGSQTFKRRASPARSHEPGNPQVE
Sbjct: 1 MSTPLSDSKWLKISTETIAPTSSKLPPTHTSTGTVRAGSQTFKRRASPARSHEPGNPQVE 60
Query: 61 QRRPLASADEPARRSRRQPLGASRLRRRRDRGPVVAVNTGPGRVRSHSVARMAA 114
QRRPLASADEPARRSRRQPLGASRLRRRRDRGPVVAVNTGPGRVRSHSVARMAA
Sbjct: 61 QRRPLASADEPARRSRRQPLGASRLRRRRDRGPVVAVNTGPGRVRSHSVARMAA 114
>gi|239748051 PREDICTED: hypothetical protein XP_002346521 [Homo
sapiens]
Length = 213
Score = 35.8 bits (81), Expect = 0.008
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 35 VRAGSQTFKRRASPARSHEPGNPQVEQRRPLASADEPARRSRRQPL--GASRLRRRRDRG 92
+RA + + R+SPARSH P +R P +A EPA R+ + + A+ R
Sbjct: 4 LRASGASPRPRSSPARSHPPAPLPFPERLPRPAAKEPAARTPARQVFPAAASAGREGSAA 63
Query: 93 PVVAVNTGPGRVRSHSVA 110
P A + PG S ++
Sbjct: 64 PDGARGSTPGLAASRELS 81
>gi|239741944 PREDICTED: hypothetical protein XP_002342359 [Homo
sapiens]
Length = 213
Score = 35.8 bits (81), Expect = 0.008
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 35 VRAGSQTFKRRASPARSHEPGNPQVEQRRPLASADEPARRSRRQPL--GASRLRRRRDRG 92
+RA + + R+SPARSH P +R P +A EPA R+ + + A+ R
Sbjct: 4 LRASGASPRPRSSPARSHPPAPLPFPERLPRPAAKEPAARTPARQVFPAAASAGREGSAA 63
Query: 93 PVVAVNTGPGRVRSHSVA 110
P A + PG S ++
Sbjct: 64 PDGARGSTPGLAASRELS 81
>gi|239753500 PREDICTED: hypothetical protein [Homo sapiens]
Length = 213
Score = 35.0 bits (79), Expect = 0.013
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 35 VRAGSQTFKRRASPARSHEPGNPQVEQRRPLASADEPARRSRRQPL--GASRLRRRRDRG 92
+RA + R+SPARSH P +R P +A EPA R+ + + A+ R
Sbjct: 4 LRASGASPSPRSSPARSHPPAPLPFPERLPRPAAKEPAARTPARQVFPAAASAGREGSAA 63
Query: 93 PVVAVNTGPGRVRSHSVA 110
P A + PG S ++
Sbjct: 64 PDGARGSTPGLAASRELS 81
>gi|21040326 SON DNA-binding protein isoform F [Homo sapiens]
Length = 2426
Score = 32.3 bits (72), Expect = 0.083
Identities = 30/91 (32%), Positives = 38/91 (41%), Gaps = 8/91 (8%)
Query: 21 TSSKLPPTHTSTGTVRAGSQTFKRRASPARSHEPGNPQVEQRRPLASADEPARRSRRQPL 80
T S+ +HT + R+ S +R S + S P R P + P+RRS R P
Sbjct: 1924 TPSRRSRSHTPSRRRRSRSVGRRRSFSISPSRRSRTPSRRSRTPSRRSRTPSRRS-RTPS 1982
Query: 81 GASRLRRRRDRGPVVAVNTGPGRVRSHSVAR 111
SR RR R P R RS SV R
Sbjct: 1983 RRSRTPSRRSRTP-------SRRRRSRSVVR 2006
>gi|21040314 SON DNA-binding protein isoform B [Homo sapiens]
Length = 2303
Score = 32.3 bits (72), Expect = 0.083
Identities = 30/91 (32%), Positives = 38/91 (41%), Gaps = 8/91 (8%)
Query: 21 TSSKLPPTHTSTGTVRAGSQTFKRRASPARSHEPGNPQVEQRRPLASADEPARRSRRQPL 80
T S+ +HT + R+ S +R S + S P R P + P+RRS R P
Sbjct: 1924 TPSRRSRSHTPSRRRRSRSVGRRRSFSISPSRRSRTPSRRSRTPSRRSRTPSRRS-RTPS 1982
Query: 81 GASRLRRRRDRGPVVAVNTGPGRVRSHSVAR 111
SR RR R P R RS SV R
Sbjct: 1983 RRSRTPSRRSRTP-------SRRRRSRSVVR 2006
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 32.3 bits (72), Expect = 0.083
Identities = 24/77 (31%), Positives = 31/77 (40%), Gaps = 5/77 (6%)
Query: 23 SKLPPTHTSTGTVRAGSQTFKR---RASPA--RSHEPGNPQVEQRRPLASADEPARRSRR 77
S+ PPT R +KR RASPA R P + +RR + +RR R
Sbjct: 1842 SRTPPTSRKRSRSRTSPAPWKRSRSRASPATHRRSRSRTPLISRRRSRSRTSPVSRRRSR 1901
Query: 78 QPLGASRLRRRRDRGPV 94
+R R R PV
Sbjct: 1902 SRTSVTRRRSRSRASPV 1918
Score = 29.3 bits (64), Expect = 0.70
Identities = 26/88 (29%), Positives = 34/88 (38%), Gaps = 11/88 (12%)
Query: 21 TSSKLPPTHTSTG-----TVRAGSQTFKRRASPARSHEPGNPQVEQRRPLASADEPARRS 75
T S+ PP S+ T +A R AS + P +R P S+ EPA +S
Sbjct: 1680 TKSRTPPRRRSSRSSPELTRKARLSRRSRSASSSPETRSRTPPRHRRSPSVSSPEPAEKS 1739
Query: 76 RRQPLGASRLRRRRDRGPVVAVNTGPGR 103
R S RRR P + GR
Sbjct: 1740 R------SSRRRRSASSPRTKTTSRRGR 1761
Score = 28.9 bits (63), Expect = 0.92
Identities = 26/74 (35%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
Query: 44 RRASPARSHEPGNPQVEQRRPLASADEPARRSR---RQPL---GASRLRRRRDRGPVVAV 97
R SPAR + RR + + PARR R R P G SR R RG +
Sbjct: 636 RSRSPARRSGRSRSRTPARRGRSRSRTPARRGRSRSRTPARRSGRSRSRTPARRGRSRSR 695
Query: 98 NTGPGRVRSHSVAR 111
GR RS S+ R
Sbjct: 696 TPRRGRSRSRSLVR 709
Score = 26.9 bits (58), Expect = 3.5
Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 14 STETIAPTSSKLPPTHTSTGTVRAGSQTFKRRASPA--RSHEPGNPQVEQRRPLASADEP 71
S +P S + + TS R+ S RASP R P V +RR +
Sbjct: 1888 SRSRTSPVSRRRSRSRTSVTRRRSRS-----RASPVSRRRSRSRTPPVTRRRSRSRTPTT 1942
Query: 72 ARRSRRQPLGASRLRRRRDRGPVV 95
RRSR + +R RR R R P V
Sbjct: 1943 RRRSRSRTPPVTR-RRSRSRTPPV 1965
Score = 26.6 bits (57), Expect = 4.6
Identities = 27/112 (24%), Positives = 41/112 (36%), Gaps = 20/112 (17%)
Query: 2 STPLSDSKWLKISTETIAPTSSKLPPTHTSTGTVRAGSQTFKRRASP-------ARSHEP 54
S+ S S S+ + + +SS + +S + G Q + ASP RS P
Sbjct: 2619 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPKPASPKKPPPGERRSRSP 2678
Query: 55 GNP-------------QVEQRRPLASADEPARRSRRQPLGASRLRRRRDRGP 93
P VE+RRP ++S G+ R +R R P
Sbjct: 2679 RKPIDSLRDSRSLSYSPVERRRPSPQPSPRDQQSSSSERGSRRGQRGDSRSP 2730
Score = 25.8 bits (55), Expect = 7.8
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Query: 43 KRRASPARSHEPGNPQVEQRRPLASADEPARRSRRQPLG-ASRLRRRRDRGPVVAVNTGP 101
K R SP RS +P+V+ + A + S +P A R RR R + GP
Sbjct: 1588 KSRLSPRRSRSGSSPEVKDKPRAAPRAQSGSDSSPEPKAPAPRALPRRSRSGSSSKGRGP 1647
Query: 102 GRVRSHS 108
S S
Sbjct: 1648 SPEGSSS 1654
>gi|132626688 mediator of DNA-damage checkpoint 1 [Homo sapiens]
Length = 2089
Score = 32.0 bits (71), Expect = 0.11
Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 6/91 (6%)
Query: 16 ETIAPTSSKLPPTHTSTGTVRAGSQTF-----KRRASPARSHEPGNPQVEQRRPLASADE 70
E + PT+ +L P+ TST T+ ++ S ++ EP P + RP S D
Sbjct: 1241 EPVVPTAPELQPS-TSTDQPVTSEPTYQATRGRKNRSSVKTPEPVVPTAPELRPSTSTDR 1299
Query: 71 PARRSRRQPLGASRLRRRRDRGPVVAVNTGP 101
P SR + P V T P
Sbjct: 1300 PVTPKPTSRTTRSRTNMSSVKTPETVVPTAP 1330
Score = 31.6 bits (70), Expect = 0.14
Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 6/91 (6%)
Query: 16 ETIAPTSSKLPPTHTSTG---TVRAGSQTFKRRA--SPARSHEPGNPQVEQRRPLASADE 70
ET+ PT+ +L P+ TST T SQ + R S ++ EP P + +P S D+
Sbjct: 1200 ETVVPTALELQPS-TSTDRPVTSEPTSQATRGRKNRSSVKTPEPVVPTAPELQPSTSTDQ 1258
Query: 71 PARRSRRQPLGASRLRRRRDRGPVVAVNTGP 101
P R R + P V T P
Sbjct: 1259 PVTSEPTYQATRGRKNRSSVKTPEPVVPTAP 1289
Score = 30.8 bits (68), Expect = 0.24
Identities = 27/91 (29%), Positives = 37/91 (40%), Gaps = 6/91 (6%)
Query: 16 ETIAPTSSKLPPTHTSTG---TVRAGSQTFKRRA--SPARSHEPGNPQVEQRRPLASADE 70
ET+ PT+ KL P+ TST T SQ + R S ++ E P + +P S D+
Sbjct: 1405 ETLVPTAPKLEPS-TSTDQPVTPEPTSQATRGRTNRSSVKTPETVVPTAPELQPSTSTDQ 1463
Query: 71 PARRSRRQPLGASRLRRRRDRGPVVAVNTGP 101
P R R + P V T P
Sbjct: 1464 PVTPEPTSQATRGRTDRSSVKTPETVVPTAP 1494
Score = 27.3 bits (59), Expect = 2.7
Identities = 23/101 (22%), Positives = 36/101 (35%), Gaps = 4/101 (3%)
Query: 1 MSTPLSDSKWLKISTETIAPTSSKLPPTHTSTGTVRAGSQTFKRRASPARSHEPGNPQVE 60
MS+ + + I+ E TS++ P T T G ++ S ++ E P
Sbjct: 1357 MSSVKNPESTVPIAPELPPSTSTEQPVTPEPTSRATRG----RKNRSSGKTPETLVPTAP 1412
Query: 61 QRRPLASADEPARRSRRQPLGASRLRRRRDRGPVVAVNTGP 101
+ P S D+P R R + P V T P
Sbjct: 1413 KLEPSTSTDQPVTPEPTSQATRGRTNRSSVKTPETVVPTAP 1453
>gi|239756584 PREDICTED: hypothetical protein [Homo sapiens]
Length = 349
Score = 32.0 bits (71), Expect = 0.11
Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 5/72 (6%)
Query: 48 PARSHEPGNPQVEQRRPLASADEPARRSRRQPLGASRLRRRRD-----RGPVVAVNTGPG 102
P PG P + R D+ + +R +P RLRR R G VV+ G
Sbjct: 139 PGAQKVPGGPYLAGRASAKQVDKELQPTRGRPASVPRLRRARQIKADFTGKVVSERAGLV 198
Query: 103 RVRSHSVARMAA 114
V S AR AA
Sbjct: 199 PVPETSAARRAA 210
>gi|239751076 PREDICTED: hypothetical protein [Homo sapiens]
Length = 349
Score = 32.0 bits (71), Expect = 0.11
Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 5/72 (6%)
Query: 48 PARSHEPGNPQVEQRRPLASADEPARRSRRQPLGASRLRRRRD-----RGPVVAVNTGPG 102
P PG P + R D+ + +R +P RLRR R G VV+ G
Sbjct: 139 PGAQKVPGGPYLAGRASAKQVDKELQPTRGRPASVPRLRRARQIKADFTGKVVSERAGLV 198
Query: 103 RVRSHSVARMAA 114
V S AR AA
Sbjct: 199 PVPETSAARRAA 210
>gi|239745563 PREDICTED: hypothetical protein [Homo sapiens]
Length = 349
Score = 32.0 bits (71), Expect = 0.11
Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 5/72 (6%)
Query: 48 PARSHEPGNPQVEQRRPLASADEPARRSRRQPLGASRLRRRRD-----RGPVVAVNTGPG 102
P PG P + R D+ + +R +P RLRR R G VV+ G
Sbjct: 139 PGAQKVPGGPYLAGRASAKQVDKELQPTRGRPASVPRLRRARQIKADFTGKVVSERAGLV 198
Query: 103 RVRSHSVARMAA 114
V S AR AA
Sbjct: 199 PVPETSAARRAA 210
>gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo
sapiens]
Length = 355
Score = 31.6 bits (70), Expect = 0.14
Identities = 34/100 (34%), Positives = 41/100 (41%), Gaps = 7/100 (7%)
Query: 17 TIAPTSSKLPPTHTS-TGTVRAGSQTFKRRASPARSHEPGNPQVEQRRPLASADEPARRS 75
T AP S PT+ + G RAG K ++ + S P QRR + P S
Sbjct: 114 TSAPRGSG--PTYCAGAGNSRAGGGLTKYNSAHSSSRVPRPRLPSQRRGASCGLGPGPES 171
Query: 76 R--RQPLGASRLRRRRDRGPVVAVNTGPGRVRSHSVARMA 113
R RQ LG R R RGP PG H+ AR A
Sbjct: 172 RAARQGLGGRSARARTRRGPHRTRRPEPG--PHHTGARQA 209
>gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo
sapiens]
Length = 355
Score = 31.6 bits (70), Expect = 0.14
Identities = 34/100 (34%), Positives = 41/100 (41%), Gaps = 7/100 (7%)
Query: 17 TIAPTSSKLPPTHTS-TGTVRAGSQTFKRRASPARSHEPGNPQVEQRRPLASADEPARRS 75
T AP S PT+ + G RAG K ++ + S P QRR + P S
Sbjct: 114 TSAPRGSG--PTYCAGAGNSRAGGGLTKYNSAHSSSRVPRPRLPSQRRGASCGLGPGPES 171
Query: 76 R--RQPLGASRLRRRRDRGPVVAVNTGPGRVRSHSVARMA 113
R RQ LG R R RGP PG H+ AR A
Sbjct: 172 RAARQGLGGRSARARTRRGPHRTRRPEPG--PHHTGARQA 209
>gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo
sapiens]
Length = 355
Score = 31.6 bits (70), Expect = 0.14
Identities = 34/100 (34%), Positives = 41/100 (41%), Gaps = 7/100 (7%)
Query: 17 TIAPTSSKLPPTHTS-TGTVRAGSQTFKRRASPARSHEPGNPQVEQRRPLASADEPARRS 75
T AP S PT+ + G RAG K ++ + S P QRR + P S
Sbjct: 114 TSAPRGSG--PTYCAGAGNSRAGGGLTKYNSAHSSSRVPRPRLPSQRRGASCGLGPGPES 171
Query: 76 R--RQPLGASRLRRRRDRGPVVAVNTGPGRVRSHSVARMA 113
R RQ LG R R RGP PG H+ AR A
Sbjct: 172 RAARQGLGGRSARARTRRGPHRTRRPEPG--PHHTGARQA 209
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 31.6 bits (70), Expect = 0.14
Identities = 31/85 (36%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Query: 35 VRAGSQTFKRRASPARSHEPGNPQVEQR------RPLASADEPARRSRRQPLGASRLRRR 88
V+ G +RR SP+RS P +P+ Q+ R S P R RR P A RRR
Sbjct: 512 VKNGEVGRRRRHSPSRSASP-SPRKRQKETSPRGRRRRSPSPPPTRRRRSPSPAPPPRRR 570
Query: 89 RDRGPVVAVNT--GPGRVRSHSVAR 111
R P T P R RS S R
Sbjct: 571 RTPTPPPRRRTPSPPPRRRSPSPRR 595
Score = 28.1 bits (61), Expect = 1.6
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 6/92 (6%)
Query: 3 TPLSDSKWLKISTETIAPTSSKLPPTHTSTGTVRAGSQTFKRRASPARSHEPGNPQVEQR 62
+P +SK K +T + S+ + + ++ +R S +RS+ P +R
Sbjct: 260 SPEKNSKKEKEKEKTRPRSRSRSKSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRR 319
Query: 63 RPLASADEPARRSRRQPLGASRLRRRRDRGPV 94
RP P RR P R RR R PV
Sbjct: 320 RPSPRRRTPPRRMPPPP------RHRRSRSPV 345
>gi|71274109 nuclear factor of kappa light polypeptide gene enhancer
in B-cells inhibitor, epsilon [Homo sapiens]
Length = 500
Score = 30.8 bits (68), Expect = 0.24
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 27 PTHTSTGTVRAGSQTFKRRASPARSHEPGNPQVEQRRPLASAD-EPARRSRR 77
PT T+ T A RA P+ H PG RPL AD +P + +RR
Sbjct: 70 PTVTAGWTWPALRTLSSLRAGPSEPHSPGRRPPRAGRPLCQADPQPGKAARR 121
>gi|13129104 coiled-coil domain containing 86 [Homo sapiens]
Length = 360
Score = 30.8 bits (68), Expect = 0.24
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 9/79 (11%)
Query: 1 MSTPLSDSKWLKISTETIAPTSSKLPPTHTSTGTVRAGSQTFKRRASPARSHEPGNPQVE 60
M TPL S+ L + P S P + TS R F+ ++P + EPG+P
Sbjct: 1 MDTPLRRSRRLG----GLRPES---PESLTSVSRTRRALVEFE--SNPEETREPGSPPSV 51
Query: 61 QRRPLASADEPARRSRRQP 79
QR L S + P + S P
Sbjct: 52 QRAGLGSPERPPKTSPGSP 70
>gi|21327710 nucleosome assembly protein 1-like 3 [Homo sapiens]
Length = 506
Score = 30.0 bits (66), Expect = 0.41
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 9/87 (10%)
Query: 1 MSTPLSDSKWLKISTETIAPTSSKLPPTHTSTGTVRAGSQTFKRRASPARSHEPGNPQVE 60
M++ SDS S+ + + TS + TS + +GS + ++ +RS +V
Sbjct: 22 MASSTSDSGEESDSSSSSSSTSDSSSSSSTSGSSSGSGSSSSSSGSTSSRSRLYRKKRVP 81
Query: 61 QRRPLASADEPARRSRRQPLGASRLRR 87
EP+RR+RR PLG + + R
Sbjct: 82 ---------EPSRRARRAPLGTNFVDR 99
>gi|148806908 fibronectin type III domain containing 1 [Homo sapiens]
Length = 1894
Score = 30.0 bits (66), Expect = 0.41
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 19 APTSSKLPPTHTSTGTVRAGSQTFKR--RASPARSHEPGNPQVEQRRPLASADEPARRSR 76
A + K + TG G +R ASPAR PG PQ R P +A +
Sbjct: 1104 AASLPKHQQVESPTGAGAGGDHRSQRGHAASPARPSRPGGPQSRARVPSRAAPGKSEPPS 1163
Query: 77 RQPLGA 82
++PL +
Sbjct: 1164 KRPLSS 1169
>gi|239755861 PREDICTED: hypothetical protein [Homo sapiens]
Length = 240
Score = 29.6 bits (65), Expect = 0.54
Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Query: 37 AGSQTFKRRASPARSHEPGNPQVEQRRPLASA-DEPARR---SRRQPLGASRLRRR--RD 90
A QT + + P + H P +P +QRRP+ A P + RR S LR
Sbjct: 4 AKGQTLRFGSQPCKEHLPSSPIYQQRRPVGGACGSPGKERNGGRRSGNAESSLRLEFLPQ 63
Query: 91 RGPVVAVNTGPGRVRSHSVARMAA 114
G V G G+VR R A
Sbjct: 64 VGEAVIDLLGRGQVRQGRQQRQPA 87
>gi|169211906 PREDICTED: hypothetical protein [Homo sapiens]
Length = 210
Score = 29.6 bits (65), Expect = 0.54
Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 48 PARSHEPGNPQVEQRRPLASADEPARRSRRQPLGASRLRRRRDRGPVVAVNTGPGR 103
P RS P Q + RP AD A R +SR RRRR RG V + + GR
Sbjct: 52 PPRSTAPRGAQGPRSRPPLGADTSAPDLSRT---SSRCRRRRRRGCVSRLGSEGGR 104
>gi|239750357 PREDICTED: hypothetical protein XP_002347380 [Homo
sapiens]
Length = 240
Score = 29.6 bits (65), Expect = 0.54
Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Query: 37 AGSQTFKRRASPARSHEPGNPQVEQRRPLASA-DEPARR---SRRQPLGASRLRRR--RD 90
A QT + + P + H P +P +QRRP+ A P + RR S LR
Sbjct: 4 AKGQTLRFGSQPCKEHLPSSPIYQQRRPVGGACGSPGKERNGGRRSGNAESSLRLEFLPQ 63
Query: 91 RGPVVAVNTGPGRVRSHSVARMAA 114
G V G G+VR R A
Sbjct: 64 VGEAVIDLLGRGQVRQGRQQRQPA 87
>gi|239747320 PREDICTED: forkhead box protein O6 [Homo sapiens]
Length = 589
Score = 29.6 bits (65), Expect = 0.54
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 26 PPTHTSTGTVRAGSQTFKRRASPARSHEPGN----PQVEQRRPLASADEPARRSRRQPLG 81
PP T + + RA S +F R SPA + G P+V + P R+ PLG
Sbjct: 175 PPGVTESCSSRAPSSSFVLRGSPAPRADGGGEVTFPEVATCEVVDLGIGPQARAFSVPLG 234
Query: 82 ASRLRRRRDRGPVVAVNTGPG 102
AS GP + +G G
Sbjct: 235 ASLQGWGTAAGPSPELGSGQG 255
>gi|169211049 PREDICTED: hypothetical protein [Homo sapiens]
Length = 210
Score = 29.6 bits (65), Expect = 0.54
Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 48 PARSHEPGNPQVEQRRPLASADEPARRSRRQPLGASRLRRRRDRGPVVAVNTGPGR 103
P RS P Q + RP AD A R +SR RRRR RG V + + GR
Sbjct: 52 PPRSTAPRGAQGPRSRPPLGADTSAPDLSRT---SSRCRRRRRRGCVSRLGSEGGR 104
>gi|239744661 PREDICTED: hypothetical protein XP_002343218 [Homo
sapiens]
Length = 240
Score = 29.6 bits (65), Expect = 0.54
Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Query: 37 AGSQTFKRRASPARSHEPGNPQVEQRRPLASA-DEPARR---SRRQPLGASRLRRR--RD 90
A QT + + P + H P +P +QRRP+ A P + RR S LR
Sbjct: 4 AKGQTLRFGSQPCKEHLPSSPIYQQRRPVGGACGSPGKERNGGRRSGNAESSLRLEFLPQ 63
Query: 91 RGPVVAVNTGPGRVRSHSVARMAA 114
G V G G+VR R A
Sbjct: 64 VGEAVIDLLGRGQVRQGRQQRQPA 87
>gi|154354972 phosphatase and actin regulator 2 isoform 4 [Homo
sapiens]
Length = 554
Score = 29.6 bits (65), Expect = 0.54
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Query: 14 STETIAPTSSKLPPTHTSTGTVRAGSQTFKRRASPARSHEPGNPQVEQRRPLASADEPAR 73
S E S K PP +AGS K+ S P RP AS + +
Sbjct: 118 SEEGNGSVSEKTPPLEEQAEDKKAGSSHSKKTTGSKASASPSTSSTSS-RPKASKETVS- 175
Query: 74 RSRRQPLGASRLRRRRDRGPVVA 96
S+ +G ++ +R+ D+ P+ +
Sbjct: 176 -SKAGTVGTTKGKRKTDKQPITS 197
>gi|154354970 phosphatase and actin regulator 2 isoform 2 [Homo
sapiens]
Length = 565
Score = 29.6 bits (65), Expect = 0.54
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Query: 14 STETIAPTSSKLPPTHTSTGTVRAGSQTFKRRASPARSHEPGNPQVEQRRPLASADEPAR 73
S E S K PP +AGS K+ S P RP AS + +
Sbjct: 129 SEEGNGSVSEKTPPLEEQAEDKKAGSSHSKKTTGSKASASPSTSSTSS-RPKASKETVS- 186
Query: 74 RSRRQPLGASRLRRRRDRGPVVA 96
S+ +G ++ +R+ D+ P+ +
Sbjct: 187 -SKAGTVGTTKGKRKTDKQPITS 208
>gi|58761548 tau tubulin kinase 1 [Homo sapiens]
Length = 1321
Score = 29.6 bits (65), Expect = 0.54
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Query: 19 APTSSKLPPTHTSTGTVRAG--SQTFKRRASPARSHE--PGNPQ---VEQRRPLASADEP 71
AP S +LP + ++ A SQ+ RR SP+ SH+ PG P V R
Sbjct: 1229 APRSPRLPASTSAARNASASPRSQSLSRRESPSPSHQARPGVPPPRGVPPARAQPDGTPS 1288
Query: 72 ARRSRRQPLGASRLRRRRDRG 92
S++ P G + +R +G
Sbjct: 1289 PGGSKKGPRGKLQAQRATTKG 1309
>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
Length = 1312
Score = 29.6 bits (65), Expect = 0.54
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 12/84 (14%)
Query: 19 APTSSKLPPTHTSTGTVRAGSQTFKRRASPARSHEPGNP-----------QVEQRRPLAS 67
AP ++ PPT + R S K AS + +P P + R+P +
Sbjct: 506 APAAAAGPPTRKKSRRERKRSGEAKEAASSSSGTQPAPPAPASPWDSKKHRSRDRKPGSH 565
Query: 68 ADEPARRSRRQPLGASRLRRRRDR 91
A ARR R + SR RRR R
Sbjct: 566 ASSSARR-RSRSRSRSRSTRRRSR 588
>gi|210032580 SET domain containing 1B [Homo sapiens]
Length = 1923
Score = 29.6 bits (65), Expect = 0.54
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Query: 24 KLPPTHTSTGTVRAGSQTFKRRASPARSHEPGNPQVEQRRPLASADEPARRSRRQPLGAS 83
K PP TS+G ++R P+ S + + + E+ R AD P ++R P G
Sbjct: 967 KEPPDTTSSGD--------QKRLRPSTSVDEEDEESERERDRDMADTPCELAKRDPKGVG 1018
Query: 84 RLRR 87
RR
Sbjct: 1019 VRRR 1022
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.124 0.357
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,013,596
Number of Sequences: 37866
Number of extensions: 234828
Number of successful extensions: 1284
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 96
Number of HSP's that attempted gapping in prelim test: 1196
Number of HSP's gapped (non-prelim): 187
length of query: 114
length of database: 18,247,518
effective HSP length: 84
effective length of query: 30
effective length of database: 15,066,774
effective search space: 452003220
effective search space used: 452003220
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.