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Search of human proteins with 239753405
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239753405 PREDICTED: hypothetical protein [Homo sapiens]
(219 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753405 PREDICTED: hypothetical protein [Homo sapiens] 454 e-128
gi|239747975 PREDICTED: hypothetical protein XP_002346485 [Homo ... 452 e-127
gi|239741872 PREDICTED: hypothetical protein XP_002342329 [Homo ... 452 e-127
gi|240849329 hypothetical protein LOC728392 [Homo sapiens] 41 0.001
gi|58761548 tau tubulin kinase 1 [Homo sapiens] 40 0.002
gi|9966841 cell death regulator aven [Homo sapiens] 40 0.002
gi|239743051 PREDICTED: hypothetical protein XP_002342747 [Homo ... 38 0.006
gi|76781485 vascular endothelial growth factor A isoform f precu... 38 0.008
gi|76781484 vascular endothelial growth factor A isoform e precu... 38 0.008
gi|76781483 vascular endothelial growth factor A isoform d precu... 38 0.008
gi|76781482 vascular endothelial growth factor A isoform c precu... 38 0.008
gi|76781481 vascular endothelial growth factor A isoform b precu... 38 0.008
gi|76781480 vascular endothelial growth factor A isoform a precu... 38 0.008
gi|76781487 vascular endothelial growth factor A isoform g precu... 38 0.008
gi|156416026 zinc finger protein 219 [Homo sapiens] 38 0.008
gi|156415998 zinc finger protein 219 [Homo sapiens] 38 0.008
gi|156415996 zinc finger protein 219 [Homo sapiens] 38 0.008
gi|187828892 calcium channel, alpha 1A subunit isoform 4 [Homo s... 37 0.010
gi|187828880 calcium channel, alpha 1A subunit isoform 3 [Homo s... 37 0.010
gi|239754674 PREDICTED: hypothetical protein [Homo sapiens] 37 0.017
gi|16579828 zinc finger protein 91 [Homo sapiens] 37 0.017
gi|7661690 coiled-coil domain containing 9 [Homo sapiens] 36 0.022
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 36 0.029
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens] 36 0.029
gi|228008400 synaptotagmin binding, cytoplasmic RNA interacting ... 35 0.038
gi|228008398 synaptotagmin binding, cytoplasmic RNA interacting ... 35 0.038
gi|228008396 synaptotagmin binding, cytoplasmic RNA interacting ... 35 0.038
gi|5454132 tumor necrosis factor, alpha-induced protein 3 [Homo ... 35 0.038
gi|239753948 PREDICTED: hypothetical protein [Homo sapiens] 35 0.038
gi|239748488 PREDICTED: hypothetical protein [Homo sapiens] 35 0.038
>gi|239753405 PREDICTED: hypothetical protein [Homo sapiens]
Length = 219
Score = 454 bits (1169), Expect = e-128
Identities = 219/219 (100%), Positives = 219/219 (100%)
Query: 1 MRCCDSKVLDMEKVGQHLPFSSRHCFLLEGPNLLSILPISLNCQDSQGFCRRLPLCGTHH 60
MRCCDSKVLDMEKVGQHLPFSSRHCFLLEGPNLLSILPISLNCQDSQGFCRRLPLCGTHH
Sbjct: 1 MRCCDSKVLDMEKVGQHLPFSSRHCFLLEGPNLLSILPISLNCQDSQGFCRRLPLCGTHH 60
Query: 61 GAYSINSSHHPSPELLQMRNMDCYHCSRGSFSGRARSSKHSHRQQQHTVLSQSLSPMESE 120
GAYSINSSHHPSPELLQMRNMDCYHCSRGSFSGRARSSKHSHRQQQHTVLSQSLSPMESE
Sbjct: 61 GAYSINSSHHPSPELLQMRNMDCYHCSRGSFSGRARSSKHSHRQQQHTVLSQSLSPMESE 120
Query: 121 GPHRRRKPGAESPRRAIEAGARPPRQRPGAGTAAARASRAGPRASRRGRGRGRGLQAARP 180
GPHRRRKPGAESPRRAIEAGARPPRQRPGAGTAAARASRAGPRASRRGRGRGRGLQAARP
Sbjct: 121 GPHRRRKPGAESPRRAIEAGARPPRQRPGAGTAAARASRAGPRASRRGRGRGRGLQAARP 180
Query: 181 PLLAFCLGREFSSGFFSPLLIPRAQFGAHASTRRPATAL 219
PLLAFCLGREFSSGFFSPLLIPRAQFGAHASTRRPATAL
Sbjct: 181 PLLAFCLGREFSSGFFSPLLIPRAQFGAHASTRRPATAL 219
>gi|239747975 PREDICTED: hypothetical protein XP_002346485 [Homo
sapiens]
Length = 219
Score = 452 bits (1162), Expect = e-127
Identities = 218/219 (99%), Positives = 218/219 (99%)
Query: 1 MRCCDSKVLDMEKVGQHLPFSSRHCFLLEGPNLLSILPISLNCQDSQGFCRRLPLCGTHH 60
MRCCDSKVLDMEKVGQHLPFSSRHCFLLEGPNLLSILPISLNCQDSQGFCRRLPLCGTHH
Sbjct: 1 MRCCDSKVLDMEKVGQHLPFSSRHCFLLEGPNLLSILPISLNCQDSQGFCRRLPLCGTHH 60
Query: 61 GAYSINSSHHPSPELLQMRNMDCYHCSRGSFSGRARSSKHSHRQQQHTVLSQSLSPMESE 120
GAYSINSSHHPSPELLQMRNMDCYHCSRGSFSGRARSSKHSH QQQHTVLSQSLSPMESE
Sbjct: 61 GAYSINSSHHPSPELLQMRNMDCYHCSRGSFSGRARSSKHSHPQQQHTVLSQSLSPMESE 120
Query: 121 GPHRRRKPGAESPRRAIEAGARPPRQRPGAGTAAARASRAGPRASRRGRGRGRGLQAARP 180
GPHRRRKPGAESPRRAIEAGARPPRQRPGAGTAAARASRAGPRASRRGRGRGRGLQAARP
Sbjct: 121 GPHRRRKPGAESPRRAIEAGARPPRQRPGAGTAAARASRAGPRASRRGRGRGRGLQAARP 180
Query: 181 PLLAFCLGREFSSGFFSPLLIPRAQFGAHASTRRPATAL 219
PLLAFCLGREFSSGFFSPLLIPRAQFGAHASTRRPATAL
Sbjct: 181 PLLAFCLGREFSSGFFSPLLIPRAQFGAHASTRRPATAL 219
>gi|239741872 PREDICTED: hypothetical protein XP_002342329 [Homo
sapiens]
Length = 219
Score = 452 bits (1162), Expect = e-127
Identities = 218/219 (99%), Positives = 218/219 (99%)
Query: 1 MRCCDSKVLDMEKVGQHLPFSSRHCFLLEGPNLLSILPISLNCQDSQGFCRRLPLCGTHH 60
MRCCDSKVLDMEKVGQHLPFSSRHCFLLEGPNLLSILPISLNCQDSQGFCRRLPLCGTHH
Sbjct: 1 MRCCDSKVLDMEKVGQHLPFSSRHCFLLEGPNLLSILPISLNCQDSQGFCRRLPLCGTHH 60
Query: 61 GAYSINSSHHPSPELLQMRNMDCYHCSRGSFSGRARSSKHSHRQQQHTVLSQSLSPMESE 120
GAYSINSSHHPSPELLQMRNMDCYHCSRGSFSGRARSSKHSH QQQHTVLSQSLSPMESE
Sbjct: 61 GAYSINSSHHPSPELLQMRNMDCYHCSRGSFSGRARSSKHSHPQQQHTVLSQSLSPMESE 120
Query: 121 GPHRRRKPGAESPRRAIEAGARPPRQRPGAGTAAARASRAGPRASRRGRGRGRGLQAARP 180
GPHRRRKPGAESPRRAIEAGARPPRQRPGAGTAAARASRAGPRASRRGRGRGRGLQAARP
Sbjct: 121 GPHRRRKPGAESPRRAIEAGARPPRQRPGAGTAAARASRAGPRASRRGRGRGRGLQAARP 180
Query: 181 PLLAFCLGREFSSGFFSPLLIPRAQFGAHASTRRPATAL 219
PLLAFCLGREFSSGFFSPLLIPRAQFGAHASTRRPATAL
Sbjct: 181 PLLAFCLGREFSSGFFSPLLIPRAQFGAHASTRRPATAL 219
>gi|240849329 hypothetical protein LOC728392 [Homo sapiens]
Length = 119
Score = 40.8 bits (94), Expect = 0.001
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 119 SEGPHRRRKPGAESPRRAIEAGA---RPPRQRPGAGTAAARASRAGPRASRRGRGRGRGL 175
++G RRR G E R E+ +PP + P A AS AG +A RR GR +G
Sbjct: 2 ADGLFRRRPWGLEQIRPDPESEGLFDKPPPEDPPAARGPRSASAAGKKAGRRAGGRAQGG 61
Query: 176 QAARPPLLA 184
+A +PP A
Sbjct: 62 RAGQPPKAA 70
>gi|58761548 tau tubulin kinase 1 [Homo sapiens]
Length = 1321
Score = 39.7 bits (91), Expect = 0.002
Identities = 27/82 (32%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Query: 92 SGRARSSKHSHRQQQHTVLSQSLSPMESEGPHRRRKPGAESPRRAIEAGARPP-RQRPGA 150
S R +S + R + SQSLS ES P + +PG PR A A+P PG
Sbjct: 1232 SPRLPASTSAARNASASPRSQSLSRRESPSPSHQARPGVPPPRGVPPARAQPDGTPSPGG 1291
Query: 151 GTAAARASRAGPRASRRGRGRG 172
R RA+ +GR G
Sbjct: 1292 SKKGPRGKLQAQRATTKGRAGG 1313
Score = 28.9 bits (63), Expect = 3.6
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 133 PRRAIEAGARPPRQRP---GAGTAAARASRAGPRASRRGR 169
P RA +AGARPP R A T+AAR + A PR+ R
Sbjct: 1218 PGRA-QAGARPPAPRSPRLPASTSAARNASASPRSQSLSR 1256
>gi|9966841 cell death regulator aven [Homo sapiens]
Length = 362
Score = 39.7 bits (91), Expect = 0.002
Identities = 25/59 (42%), Positives = 28/59 (47%), Gaps = 9/59 (15%)
Query: 124 RRRKPGAESPRRAIEAGARPPRQRPGAGTAAARASRAG---PRASRRGRGRGRGLQAAR 179
R R+PG P G +RPGA A AR G RRGRGRGRG + AR
Sbjct: 11 RGRRPGRGRP------GGDRHSERPGAAAAVARGGGGGGGGDGGGRRGRGRGRGFRGAR 63
>gi|239743051 PREDICTED: hypothetical protein XP_002342747 [Homo
sapiens]
Length = 306
Score = 38.1 bits (87), Expect = 0.006
Identities = 30/99 (30%), Positives = 41/99 (41%), Gaps = 13/99 (13%)
Query: 86 CSRGSFSGRARSSKHSHRQQQHTVLSQSLSPMESEGPHR--RRKPGAESPR-RAIEAGAR 142
C +G+ R S+ S +Q P G R R P A+ R + E A
Sbjct: 200 CQPAGGTGQRRGSRSSPSRQ----------PAGGTGQRRGSRSSPSADQQRAQDREEEAA 249
Query: 143 PPRQRPGAGTAAARASRAGPRASRRGRGRGRGLQAARPP 181
P++RP GT R + A P + G G+ RG AA P
Sbjct: 250 QPQRRPAGGTGQRRGTAAAPVPTTGGTGQRRGTAAAPAP 288
Score = 30.8 bits (68), Expect = 0.94
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
Query: 111 SQSLSPMESEGPHRRRKPGAESP------RRAIEAGARPPRQRPGAGTAAARASRAGPRA 164
S+S S + +G R + A +P R + + P+ RP AGT R S P A
Sbjct: 106 SRSSSSADQQGAQDREEEAAAAPAPTSSGHRTEKRKPQQPQCRPAAGTGQRRGSGCSPSA 165
Query: 165 SRRGRGRGRGLQAARPPL 182
++ R + R +A P+
Sbjct: 166 DQQ-RAQDREEEATAAPV 182
Score = 29.3 bits (64), Expect = 2.7
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 111 SQSLSPMESEGPHRRRKPGAESP------RRAIEAGARPPRQRPGAGTAAARASRAGPRA 164
S S + +G R + A +P R + + P++RP GT R SR+ A
Sbjct: 53 SGSSPSADQQGAQDREEEAAAAPAPTSRGHRTEKRKPQQPQRRPAGGTGQRRGSRSSSSA 112
Query: 165 SRRGRGRGRGLQAARPP 181
++G + R +AA P
Sbjct: 113 DQQG-AQDREEEAAAAP 128
Score = 29.3 bits (64), Expect = 2.7
Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 8/83 (9%)
Query: 92 SGRARSSKHSHRQQQHTVLSQSLSPMESEGPHRRRKPGAESPRRAIEAGARPPRQRPGAG 151
+G+ R S+ S Q Q E E +R+P + +R A A P G
Sbjct: 224 TGQRRGSRSSPSADQ-----QRAQDREEEAAQPQRRPAGGTGQRRGTAAAPVPTT---GG 275
Query: 152 TAAARASRAGPRASRRGRGRGRG 174
T R + A P + G G+ RG
Sbjct: 276 TGQRRGTAAAPAPTSTGTGQRRG 298
>gi|76781485 vascular endothelial growth factor A isoform f
precursor [Homo sapiens]
Length = 327
Score = 37.7 bits (86), Expect = 0.008
Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 92 SGRARSSKHSHRQQQHTVLSQSLSPMESEGPHRR---RKPGAESPRRAIEAGARPPRQRP 148
SG ARS+ + Q + E GP R RKPG+ + A+ A + P + P
Sbjct: 77 SGAARSASSGREEPQPEEGEEEEEKEEERGPQWRLGARKPGSWTGEAAVCADSAPAARAP 136
Query: 149 GAGTAAARASRAGPRASRRG 168
A ARAS G R +RRG
Sbjct: 137 ---QALARASGRGGRVARRG 153
>gi|76781484 vascular endothelial growth factor A isoform e
precursor [Homo sapiens]
Length = 354
Score = 37.7 bits (86), Expect = 0.008
Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 92 SGRARSSKHSHRQQQHTVLSQSLSPMESEGPHRR---RKPGAESPRRAIEAGARPPRQRP 148
SG ARS+ + Q + E GP R RKPG+ + A+ A + P + P
Sbjct: 77 SGAARSASSGREEPQPEEGEEEEEKEEERGPQWRLGARKPGSWTGEAAVCADSAPAARAP 136
Query: 149 GAGTAAARASRAGPRASRRG 168
A ARAS G R +RRG
Sbjct: 137 ---QALARASGRGGRVARRG 153
>gi|76781483 vascular endothelial growth factor A isoform d
precursor [Homo sapiens]
Length = 371
Score = 37.7 bits (86), Expect = 0.008
Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 92 SGRARSSKHSHRQQQHTVLSQSLSPMESEGPHRR---RKPGAESPRRAIEAGARPPRQRP 148
SG ARS+ + Q + E GP R RKPG+ + A+ A + P + P
Sbjct: 77 SGAARSASSGREEPQPEEGEEEEEKEEERGPQWRLGARKPGSWTGEAAVCADSAPAARAP 136
Query: 149 GAGTAAARASRAGPRASRRG 168
A ARAS G R +RRG
Sbjct: 137 ---QALARASGRGGRVARRG 153
>gi|76781482 vascular endothelial growth factor A isoform c
precursor [Homo sapiens]
Length = 389
Score = 37.7 bits (86), Expect = 0.008
Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 92 SGRARSSKHSHRQQQHTVLSQSLSPMESEGPHRR---RKPGAESPRRAIEAGARPPRQRP 148
SG ARS+ + Q + E GP R RKPG+ + A+ A + P + P
Sbjct: 77 SGAARSASSGREEPQPEEGEEEEEKEEERGPQWRLGARKPGSWTGEAAVCADSAPAARAP 136
Query: 149 GAGTAAARASRAGPRASRRG 168
A ARAS G R +RRG
Sbjct: 137 ---QALARASGRGGRVARRG 153
>gi|76781481 vascular endothelial growth factor A isoform b
precursor [Homo sapiens]
Length = 395
Score = 37.7 bits (86), Expect = 0.008
Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 92 SGRARSSKHSHRQQQHTVLSQSLSPMESEGPHRR---RKPGAESPRRAIEAGARPPRQRP 148
SG ARS+ + Q + E GP R RKPG+ + A+ A + P + P
Sbjct: 77 SGAARSASSGREEPQPEEGEEEEEKEEERGPQWRLGARKPGSWTGEAAVCADSAPAARAP 136
Query: 149 GAGTAAARASRAGPRASRRG 168
A ARAS G R +RRG
Sbjct: 137 ---QALARASGRGGRVARRG 153
>gi|76781480 vascular endothelial growth factor A isoform a
precursor [Homo sapiens]
Length = 412
Score = 37.7 bits (86), Expect = 0.008
Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 92 SGRARSSKHSHRQQQHTVLSQSLSPMESEGPHRR---RKPGAESPRRAIEAGARPPRQRP 148
SG ARS+ + Q + E GP R RKPG+ + A+ A + P + P
Sbjct: 77 SGAARSASSGREEPQPEEGEEEEEKEEERGPQWRLGARKPGSWTGEAAVCADSAPAARAP 136
Query: 149 GAGTAAARASRAGPRASRRG 168
A ARAS G R +RRG
Sbjct: 137 ---QALARASGRGGRVARRG 153
>gi|76781487 vascular endothelial growth factor A isoform g
precursor [Homo sapiens]
Length = 371
Score = 37.7 bits (86), Expect = 0.008
Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 92 SGRARSSKHSHRQQQHTVLSQSLSPMESEGPHRR---RKPGAESPRRAIEAGARPPRQRP 148
SG ARS+ + Q + E GP R RKPG+ + A+ A + P + P
Sbjct: 77 SGAARSASSGREEPQPEEGEEEEEKEEERGPQWRLGARKPGSWTGEAAVCADSAPAARAP 136
Query: 149 GAGTAAARASRAGPRASRRG 168
A ARAS G R +RRG
Sbjct: 137 ---QALARASGRGGRVARRG 153
>gi|156416026 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 37.7 bits (86), Expect = 0.008
Identities = 46/189 (24%), Positives = 61/189 (32%), Gaps = 32/189 (16%)
Query: 54 PLCGTHHGAYSINSSHHPSPELLQMRNMDCYHCSRGSFSGRARSSKHSHRQQQHTVLSQS 113
P CG S S+HH L Y C ++G S H Q+ H
Sbjct: 501 PFCGK-----SFRSAHHLKVHLRVHTGERPYKCPHCDYAGTQSGSLKYHLQRHHREQRSG 555
Query: 114 LSP----------MESEGPHRRRKPGAESPRRAIEAGARPPRQRPGAGTAAARASRAGPR 163
P P KP + P +E + P GAG + R + R
Sbjct: 556 AGPGPPPEPPPPSQRGSAPQSGAKPSPQ-PATWVEGASSPRPPSSGAGPGSRRKPASPGR 614
Query: 164 ASRRGRG-----------RGRGLQAARPPLLAFCLGREFSSGFFSPLLIP---RAQFGAH 209
R GRG G G +A L CL F++G +P L+ +
Sbjct: 615 TLRNGRGGEAEPLDLSLRAGPGGEAGPGGALHRCLFCPFATG--APELMALHLQVHHSRR 672
Query: 210 ASTRRPATA 218
A RRP A
Sbjct: 673 ARGRRPPQA 681
>gi|156415998 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 37.7 bits (86), Expect = 0.008
Identities = 46/189 (24%), Positives = 61/189 (32%), Gaps = 32/189 (16%)
Query: 54 PLCGTHHGAYSINSSHHPSPELLQMRNMDCYHCSRGSFSGRARSSKHSHRQQQHTVLSQS 113
P CG S S+HH L Y C ++G S H Q+ H
Sbjct: 501 PFCGK-----SFRSAHHLKVHLRVHTGERPYKCPHCDYAGTQSGSLKYHLQRHHREQRSG 555
Query: 114 LSP----------MESEGPHRRRKPGAESPRRAIEAGARPPRQRPGAGTAAARASRAGPR 163
P P KP + P +E + P GAG + R + R
Sbjct: 556 AGPGPPPEPPPPSQRGSAPQSGAKPSPQ-PATWVEGASSPRPPSSGAGPGSRRKPASPGR 614
Query: 164 ASRRGRG-----------RGRGLQAARPPLLAFCLGREFSSGFFSPLLIP---RAQFGAH 209
R GRG G G +A L CL F++G +P L+ +
Sbjct: 615 TLRNGRGGEAEPLDLSLRAGPGGEAGPGGALHRCLFCPFATG--APELMALHLQVHHSRR 672
Query: 210 ASTRRPATA 218
A RRP A
Sbjct: 673 ARGRRPPQA 681
>gi|156415996 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 37.7 bits (86), Expect = 0.008
Identities = 46/189 (24%), Positives = 61/189 (32%), Gaps = 32/189 (16%)
Query: 54 PLCGTHHGAYSINSSHHPSPELLQMRNMDCYHCSRGSFSGRARSSKHSHRQQQHTVLSQS 113
P CG S S+HH L Y C ++G S H Q+ H
Sbjct: 501 PFCGK-----SFRSAHHLKVHLRVHTGERPYKCPHCDYAGTQSGSLKYHLQRHHREQRSG 555
Query: 114 LSP----------MESEGPHRRRKPGAESPRRAIEAGARPPRQRPGAGTAAARASRAGPR 163
P P KP + P +E + P GAG + R + R
Sbjct: 556 AGPGPPPEPPPPSQRGSAPQSGAKPSPQ-PATWVEGASSPRPPSSGAGPGSRRKPASPGR 614
Query: 164 ASRRGRG-----------RGRGLQAARPPLLAFCLGREFSSGFFSPLLIP---RAQFGAH 209
R GRG G G +A L CL F++G +P L+ +
Sbjct: 615 TLRNGRGGEAEPLDLSLRAGPGGEAGPGGALHRCLFCPFATG--APELMALHLQVHHSRR 672
Query: 210 ASTRRPATA 218
A RRP A
Sbjct: 673 ARGRRPPQA 681
>gi|187828892 calcium channel, alpha 1A subunit isoform 4 [Homo
sapiens]
Length = 2506
Score = 37.4 bits (85), Expect = 0.010
Identities = 42/140 (30%), Positives = 50/140 (35%), Gaps = 29/140 (20%)
Query: 46 SQGFCRRLPLCGTHH------GAYSINSSHHPSPELLQMRNMDCYHCSRGSFSGRARSSK 99
S G R P G+ G Y S HH L+ RG R +
Sbjct: 874 SAGLDARRPWAGSQEAELSREGPYGRESDHHAREGSLEQPGFWEGEAERGKAGDPHR--R 931
Query: 100 HSHRQQQHTVLSQSLSPME-SEGPHRR----RKPGAESPRRAIEAGARPPRQRPGAGTAA 154
H HRQ S+S SP ++G HRR R+PG E P E AR
Sbjct: 932 HVHRQGGSRE-SRSGSPRTGADGEHRRHRAHRRPGEEGPEDKAERRAR------------ 978
Query: 155 ARASRAGPRASRRGRGRGRG 174
R G R +R G G G G
Sbjct: 979 ---HREGSRPARGGEGEGEG 995
Score = 30.4 bits (67), Expect = 1.2
Identities = 40/156 (25%), Positives = 57/156 (36%), Gaps = 17/156 (10%)
Query: 69 HHPSPELLQMRNMDCYHCSRGSFSGRARS-----SKHSHRQQQHTVLSQSLSPMESEGPH 123
HHP P + D Y R GRAR+ S+ ++H Q S + G
Sbjct: 2218 HHPPPP-----DKDRYAQERPDH-GRARARDQRWSRSPSEGREHMAHRQGSSSVS--GSP 2269
Query: 124 RRRKPGAESPRRA---IEAGARPPRQRPGAGTAAARASRAGPRASRRGRGRGRGLQA-AR 179
G +PRR + PR +A +GP ++ + + + QA AR
Sbjct: 2270 APSTSGTSTPRRGRRQLPQTPSTPRPHVSYSPVIRKAGGSGPPQQQQQQQQQQQQQAVAR 2329
Query: 180 PPLLAFCLGREFSSGFFSPLLIPRAQFGAHASTRRP 215
P A R + PL R G H+S R P
Sbjct: 2330 PGRAATSGPRRYPGPTAEPLAGDRPPTGGHSSGRSP 2365
>gi|187828880 calcium channel, alpha 1A subunit isoform 3 [Homo
sapiens]
Length = 2261
Score = 37.4 bits (85), Expect = 0.010
Identities = 42/140 (30%), Positives = 50/140 (35%), Gaps = 29/140 (20%)
Query: 46 SQGFCRRLPLCGTHH------GAYSINSSHHPSPELLQMRNMDCYHCSRGSFSGRARSSK 99
S G R P G+ G Y S HH L+ RG R +
Sbjct: 875 SAGLDARRPWAGSQEAELSREGPYGRESDHHAREGSLEQPGFWEGEAERGKAGDPHR--R 932
Query: 100 HSHRQQQHTVLSQSLSPME-SEGPHRR----RKPGAESPRRAIEAGARPPRQRPGAGTAA 154
H HRQ S+S SP ++G HRR R+PG E P E AR
Sbjct: 933 HVHRQGGSRE-SRSGSPRTGADGEHRRHRAHRRPGEEGPEDKAERRAR------------ 979
Query: 155 ARASRAGPRASRRGRGRGRG 174
R G R +R G G G G
Sbjct: 980 ---HREGSRPARGGEGEGEG 996
>gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]
Length = 480
Score = 36.6 bits (83), Expect = 0.017
Identities = 35/113 (30%), Positives = 46/113 (40%), Gaps = 24/113 (21%)
Query: 89 GSFSGRARSSKHSHRQQQHTVLSQSLSPMESEGPHRRRKPG-----AESPRRAIEAGARP 143
GSF GR +S ++ + + P + P R R+PG + PR A P
Sbjct: 188 GSFGGRPKSQPPLPQE----TAAPAPQPGPTAPPARVREPGRAEGASREPRLRSRAARPP 243
Query: 144 PRQRPGAGTAAARASRAG--------------PRASRRGRGRGRG-LQAARPP 181
P PGA + A+R+ AG PRA G GR G L A PP
Sbjct: 244 PAPGPGALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRNPGALGRAAPP 296
Score = 28.5 bits (62), Expect = 4.7
Identities = 21/52 (40%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 133 PRRAIEAGARPPRQRPGAGTAAARASRAGPRA-SRRGRGRGRGLQAARPPLL 183
PR+ G RP Q P AA A + GP A R R GR A+R P L
Sbjct: 184 PRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVREPGRAEGASREPRL 235
>gi|16579828 zinc finger protein 91 [Homo sapiens]
Length = 570
Score = 36.6 bits (83), Expect = 0.017
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 118 ESEGPHRRRKPGAESPRRAIEAGARPPRQRPGAGTAAARASRAGPRASRRGRGRGRGLQA 177
E P ++ + G E A +A P+QRP AAA A R R GR RGR A
Sbjct: 7 EPRPPEQQDQEGGE----AAKAAPEEPQQRPPEAVAAAPAGTTSSRVLRGGRDRGRAAAA 62
Query: 178 A 178
A
Sbjct: 63 A 63
>gi|7661690 coiled-coil domain containing 9 [Homo sapiens]
Length = 531
Score = 36.2 bits (82), Expect = 0.022
Identities = 28/70 (40%), Positives = 31/70 (44%), Gaps = 13/70 (18%)
Query: 117 MESE---GPHRRRKPGAESPRRAIEAGARPPRQRPGAGTAAARAS---------RAGPRA 164
+ESE GP RR PG P A + G PP+Q AG A S R G
Sbjct: 68 VESEKNLGPSRR-SPGTPRPPGASKGGRTPPQQGGRAGMGRASRSWEGSPGEQPRGGGAG 126
Query: 165 SRRGRGRGRG 174
R RGRGRG
Sbjct: 127 GRGRRGRGRG 136
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 35.8 bits (81), Expect = 0.029
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 94 RARSSKHSHRQQQHTVLSQSLSPMESEGPHRRRKPGAESPRRAIEAGARPPRQR 147
R+RS H+ +++H S+S SP P RR P +P R + PPR R
Sbjct: 289 RSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPP---PPRHR 339
>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
Length = 1336
Score = 35.8 bits (81), Expect = 0.029
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Query: 115 SPMESEGPHRRRKPGAE---SPRRAIEAGARPPRQRP---GAGTAAARASRA--GPRASR 166
+P PH P + S + ++ + PPR+RP G GT+ R A GP R
Sbjct: 1198 TPRPDHPPHDGHSPASRERSSSLQGMDMASLPPRKRPWHDGPGTSEHREMEAPGGPSEDR 1257
Query: 167 RGRGRGRGLQAARPP 181
G+GRG A R P
Sbjct: 1258 GGKGRGGPGPAQRVP 1272
>gi|228008400 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 6 [Homo sapiens]
Length = 562
Score = 35.4 bits (80), Expect = 0.038
Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 121 GPHRRRKPGAESPRRAIEAGARPPR------QRPGAGTAAARASRAGPRASRRGRGRGRG 174
G R GA + GA PPR QR G G+A G +RGRG+G+G
Sbjct: 494 GARGRGGRGARGAAPSRGRGAAPPRGRAGYSQRGGPGSARGVRGARGGAQQQRGRGQGKG 553
Query: 175 LQAARPPLL 183
++A P LL
Sbjct: 554 VEAG-PDLL 561
>gi|228008398 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 3 [Homo sapiens]
Length = 527
Score = 35.4 bits (80), Expect = 0.038
Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 121 GPHRRRKPGAESPRRAIEAGARPPR------QRPGAGTAAARASRAGPRASRRGRGRGRG 174
G R GA + GA PPR QR G G+A G +RGRG+G+G
Sbjct: 459 GARGRGGRGARGAAPSRGRGAAPPRGRAGYSQRGGPGSARGVRGARGGAQQQRGRGQGKG 518
Query: 175 LQAARPPLL 183
++A P LL
Sbjct: 519 VEAG-PDLL 526
>gi|228008396 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 2 [Homo sapiens]
Length = 464
Score = 35.4 bits (80), Expect = 0.038
Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 121 GPHRRRKPGAESPRRAIEAGARPPR------QRPGAGTAAARASRAGPRASRRGRGRGRG 174
G R GA + GA PPR QR G G+A G +RGRG+G+G
Sbjct: 396 GARGRGGRGARGAAPSRGRGAAPPRGRAGYSQRGGPGSARGVRGARGGAQQQRGRGQGKG 455
Query: 175 LQAARPPLL 183
++A P LL
Sbjct: 456 VEAG-PDLL 463
>gi|5454132 tumor necrosis factor, alpha-induced protein 3 [Homo
sapiens]
Length = 790
Score = 35.4 bits (80), Expect = 0.038
Identities = 34/131 (25%), Positives = 52/131 (39%), Gaps = 30/131 (22%)
Query: 38 PISLNCQDSQGFCRRLPLCGTHHGAYSINSSHHPSPELLQMRNMD---CYHCSRG---SF 91
P +LN Q + GFC R H A +++SH P R++D C C + +F
Sbjct: 484 PFTLNVQHN-GFCERC------HNARQLHASHAPD----HTRHLDPGKCQACLQDVTRTF 532
Query: 92 SGRARSSKHSHRQQQHTVLSQSLSP-------------MESEGPHRRRKPGAESPRRAIE 138
+G + + + LS SL P + S PH + G ++P +
Sbjct: 533 NGICSTCFKRTTAEASSSLSTSLPPSCHQRSKSDPSRLVRSPSPHSCHRAGNDAPAGCLS 592
Query: 139 AGARPPRQRPG 149
AR P R G
Sbjct: 593 QAARTPGDRTG 603
>gi|239753948 PREDICTED: hypothetical protein [Homo sapiens]
Length = 131
Score = 35.4 bits (80), Expect = 0.038
Identities = 30/84 (35%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Query: 101 SHRQQQHTVLSQSLSPMESEGPHRRRKPGAESPRRAIEAGARPPRQRPGAGTAAARASRA 160
SH HT +Q+ P P R GA P A A PP R +A A ASR
Sbjct: 51 SHESGLHTH-TQAPVPAADRLPAIRAVCGARVP--GARAAAAPPPFRSSDASARAPASRN 107
Query: 161 GPRASRRGRGRGRGLQAARPPLLA 184
P A RG+G ARP + A
Sbjct: 108 TPTARTGRRGKGETQPRARPSVAA 131
>gi|239748488 PREDICTED: hypothetical protein [Homo sapiens]
Length = 131
Score = 35.4 bits (80), Expect = 0.038
Identities = 30/84 (35%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Query: 101 SHRQQQHTVLSQSLSPMESEGPHRRRKPGAESPRRAIEAGARPPRQRPGAGTAAARASRA 160
SH HT +Q+ P P R GA P A A PP R +A A ASR
Sbjct: 51 SHESGLHTH-TQAPVPAADRLPAIRAVCGARVP--GARAAAAPPPFRSSDASARAPASRN 107
Query: 161 GPRASRRGRGRGRGLQAARPPLLA 184
P A RG+G ARP + A
Sbjct: 108 TPTARTGRRGKGETQPRARPSVAA 131
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.134 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,016,824
Number of Sequences: 37866
Number of extensions: 528285
Number of successful extensions: 4758
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 364
Number of HSP's that attempted gapping in prelim test: 4142
Number of HSP's gapped (non-prelim): 874
length of query: 219
length of database: 18,247,518
effective HSP length: 98
effective length of query: 121
effective length of database: 14,536,650
effective search space: 1758934650
effective search space used: 1758934650
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.