Guide to the Human Genome
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Name: LOC100292786 Sequence: fasta or formatted (155aa) NCBI GI: 239753343
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         12           1
 C cysteine            3.2          5           2
 D aspartate           1.9          3           1
 E glutamate           1.3          2           1
 F phenylalanine       6.5         10           2
 G glycine             3.2          5           1
 H histidine           1.9          3           1
 I isoleucine          5.8          9           1
 K lysine              4.5          7           2
 L leucine            14.2         22           3
 M methionine          1.9          3           1
 N asparagine          1.9          3           1
 P proline             9.0         14           1
 Q glutamine           3.2          5           1
 R arginine            3.9          6           1
 S serine             18.7         29           4
 T threonine           2.6          4           1
 V valine              2.6          4           1
 W tryptophan          0.6          1           1
 Y tyrosine            5.2          8           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100289739          1.000   PREDICTED: hypothetical protein XP_002346478 
LOC100289521          1.000   PREDICTED: hypothetical protein XP_002342319 
OMD                   0.024   osteomodulin 
ALG6                  0.021   dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosy...
CACNA1A               0.017   calcium channel, alpha 1A subunit isoform 4 
CACNA1A               0.017   calcium channel, alpha 1A subunit isoform 3 
COG2                  0.017   component of oligomeric golgi complex 2 isoform 2 [...
CACNA1E               0.014   calcium channel, voltage-dependent, R type, alpha 1E...
LRRIQ4                0.014   leucine-rich repeats and IQ motif containing 4 [Hom...
OR1L8                 0.014   olfactory receptor, family 1, subfamily L, member 8 ...
CACNA1B               0.010   calcium channel, voltage-dependent, N type, alpha 1B ...
LOC100292718          0.010   PREDICTED: hypothetical protein 
LOC100290569          0.010   PREDICTED: hypothetical protein XP_002347932 
LOC100288023          0.010   PREDICTED: hypothetical protein XP_002344199 
CASKIN2               0.010   cask-interacting protein 2 isoform b 
CASKIN2               0.010   cask-interacting protein 2 isoform a 
TBX15                 0.007   T-box 15 
FAM71E2               0.007   hypothetical protein LOC284418 
PAIP1                 0.007   poly(A) binding protein interacting protein 1 isofor...
PAIP1                 0.007   poly(A) binding protein interacting protein 1 isofor...
EDC4                  0.007   autoantigen RCD8 
COG2                  0.007   component of oligomeric golgi complex 2 isoform 1 [Ho...
HES3                  0.007   hairy and enhancer of split 3 
CXorf1                0.007   hypothetical protein LOC9142 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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