Guide to the Human Genome
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Name: CXorf1 Sequence: fasta or formatted (111aa) NCBI GI: 4758100
Description:

hypothetical protein LOC9142

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3          7           1
 C cysteine            1.8          2           1
 D aspartate           0.0          0           0
 E glutamate           1.8          2           1
 F phenylalanine      13.5         15           1
 G glycine             0.0          0           0
 H histidine           3.6          4           1
 I isoleucine         10.8         12           2
 K lysine              3.6          4           1
 L leucine            10.8         12           2
 M methionine          2.7          3           1
 N asparagine          2.7          3           1
 P proline             5.4          6           1
 Q glutamine           2.7          3           1
 R arginine            4.5          5           1
 S serine             11.7         13           2
 T threonine           4.5          5           1
 V valine              1.8          2           1
 W tryptophan          1.8          2           1
 Y tyrosine            9.9         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC9142 
GPR174                0.010   putative purinergic receptor FKSG79 
LOC100292786          0.010   PREDICTED: hypothetical protein 
LOC100289739          0.010   PREDICTED: hypothetical protein XP_002346478 
LOC100289521          0.010   PREDICTED: hypothetical protein XP_002342319 
CASD1                 0.010   CAS1 domain containing 1 
PGAP3                 0.005   per1-like domain containing 1 
TAS2R16               0.005   taste receptor T2R16 
OR4N5                 0.005   olfactory receptor, family 4, subfamily N, member 5 ...
ZNF669                0.005   zinc finger protein 669 isoform 2 
ZNF669                0.005   zinc finger protein 669 isoform 1 
OR10A3                0.005   olfactory receptor, family 10, subfamily A, member 3...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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