Guide to the Human Genome
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Name: COG2 Sequence: fasta or formatted (737aa) NCBI GI: 223029519
Description:

component of oligomeric golgi complex 2 isoform 2

Referenced in:

ER, Golgi, and the Secretory Pathway

Other entries for this name:
alt prot [738aa] component of oligomeric golgi complex 2 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         43           3
 C cysteine            1.4         10           1
 D aspartate           5.6         41           3
 E glutamate           7.9         58           2
 F phenylalanine       3.4         25           1
 G glycine             4.3         32           2
 H histidine           1.8         13           2
 I isoleucine          5.2         38           2
 K lysine              7.2         53           3
 L leucine            12.8         94           3
 M methionine          2.0         15           1
 N asparagine          3.0         22           1
 P proline             4.7         35           1
 Q glutamine           5.6         41           2
 R arginine            5.4         40           2
 S serine              9.6         71           2
 T threonine           4.2         31           2
 V valine              6.9         51           2
 W tryptophan          0.8          6           1
 Y tyrosine            2.4         18           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   component of oligomeric golgi complex 2 isoform 2 [... 
COG2                  0.996   component of oligomeric golgi complex 2 isoform 1 [Ho...
AKAP9                 0.011   A-kinase anchor protein 9 isoform 2 
AKAP9                 0.011   A-kinase anchor protein 9 isoform 3 
SPTAN1                0.008   spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) ...
SPTAN1                0.008   spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) ...
COG5                  0.008   component of oligomeric golgi complex 5 isoform 3 [...
COG5                  0.008   component of oligomeric golgi complex 5 isoform 2 [...
COG5                  0.008   component of oligomeric golgi complex 5 isoform 1 [...
TEX14                 0.008   testis expressed sequence 14 isoform a 
TEX14                 0.008   testis expressed sequence 14 isoform b 
LOC100129791          0.008   PREDICTED: hypothetical protein LOC100129791 
LOC100129791          0.008   PREDICTED: hypothetical protein LOC100129791 
DNAH11                0.007   dynein, axonemal, heavy chain 11 
IFT81                 0.006   intraflagellar transport 81-like isoform 1 
IFT81                 0.006   intraflagellar transport 81-like isoform 2 
IFT81                 0.006   intraflagellar transport 81-like isoform 1 
NUMA1                 0.006   nuclear mitotic apparatus protein 1 
EFCAB4B               0.006   EF-hand calcium binding domain 4B isoform c 
EFCAB4B               0.006   EF-hand calcium binding domain 4B isoform b 
EFCAB4B               0.006   EF-hand calcium binding domain 4B isoform a 
USP37                 0.006   ubiquitin specific peptidase 37 
RPGRIP1               0.005   retinitis pigmentosa GTPase regulator interacting p...
ZNF608                0.005   zinc finger protein 608 
KIF20B                0.005   M-phase phosphoprotein 1 
STAT3                 0.005   signal transducer and activator of transcription 3 i...
STAT3                 0.005   signal transducer and activator of transcription 3 i...
STAT3                 0.005   signal transducer and activator of transcription 3 i...
CEP290                0.005   centrosomal protein 290kDa 
KRT80                 0.005   keratin 80 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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