Guide to the Human Genome
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Name: BAT5 Sequence: fasta or formatted (558aa) NCBI GI: 15100151
Description:

HLA-B associated transcript 5

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         46           2
 C cysteine            2.0         11           2
 D aspartate           4.1         23           2
 E glutamate           5.7         32           2
 F phenylalanine       3.8         21           2
 G glycine             6.3         35           2
 H histidine           2.9         16           1
 I isoleucine          3.6         20           3
 K lysine              2.9         16           2
 L leucine            11.6         65           5
 M methionine          2.2         12           1
 N asparagine          3.4         19           2
 P proline             6.1         34           1
 Q glutamine           4.5         25           1
 R arginine            7.7         43           2
 S serine              7.3         41           3
 T threonine           4.7         26           3
 V valine              6.5         36           3
 W tryptophan          2.5         14           1
 Y tyrosine            4.1         23           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   HLA-B associated transcript 5 
C20orf135             0.444   hypothetical protein LOC140701 
FAM108A1              0.018   hypothetical protein LOC81926 isoform 2 
FAM108B1              0.018   family with sequence similarity 108, member B1 isofo...
FAM108B1              0.018   family with sequence similarity 108, member B1 isofo...
FAM108A4              0.017   PREDICTED: hypothetical protein 
FAM108A1              0.017   hypothetical protein LOC81926 isoform 1 
FAM108C1              0.015   hypothetical protein LOC58489 
LOC100289252          0.013   PREDICTED: hypothetical protein XP_002342156 
FAM108A5              0.012   PREDICTED: family with sequence similarity 108, mem...
FAM108A5              0.012   PREDICTED: family with sequence similarity 108, mem...
FAM108A5              0.012   PREDICTED: hypothetical protein LOC729495 
ABHD12B               0.012   abhydrolase domain containing 12B isoform c 
ABHD12B               0.012   abhydrolase domain containing 12B isoform b 
PRCP                  0.007   prolylcarboxypeptidase isoform 2 preproprotein [Hom...
PRCP                  0.007   prolylcarboxypeptidase isoform 1 preproprotein 
TTLL5                 0.005   tubulin tyrosine ligase-like family, member 5 
ANKRD24               0.005   ankyrin repeat domain 24 
ABHD4                 0.004   abhydrolase domain containing 4 
KALRN                 0.004   kalirin, RhoGEF kinase isoform 1 
KALRN                 0.004   kalirin, RhoGEF kinase isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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