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Search of human proteins with 239752933
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239752933 PREDICTED: hypothetical protein [Homo sapiens]
(203 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752933 PREDICTED: hypothetical protein [Homo sapiens] 419 e-118
gi|239747485 PREDICTED: hypothetical protein XP_002347546 [Homo ... 373 e-104
gi|239741357 PREDICTED: hypothetical protein XP_002342183 [Homo ... 373 e-104
gi|23397642 GREB1 protein isoform a [Homo sapiens] 38 0.005
gi|28559039 mediator complex subunit 1 [Homo sapiens] 37 0.009
gi|151301137 AT-hook transcription factor [Homo sapiens] 37 0.009
gi|133922600 splicing factor, arginine/serine-rich 16 [Homo sapi... 36 0.020
gi|95147342 chromodomain helicase DNA binding protein 9 [Homo sa... 34 0.075
gi|148237270 hypermethylated in cancer 1 isoform 2 [Homo sapiens] 33 0.17
gi|61676186 hypermethylated in cancer 1 isoform 1 [Homo sapiens] 33 0.17
gi|151301154 mucin 6, gastric [Homo sapiens] 33 0.17
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 33 0.17
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 33 0.22
gi|33356174 pinin, desmosome associated protein [Homo sapiens] 33 0.22
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 33 0.22
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 32 0.28
gi|239752939 PREDICTED: hypothetical protein [Homo sapiens] 32 0.37
gi|239747479 PREDICTED: hypothetical protein XP_002347544 [Homo ... 32 0.37
gi|239741351 PREDICTED: hypothetical protein XP_002342181 [Homo ... 32 0.37
gi|33188443 microfilament and actin filament cross-linker protei... 32 0.37
gi|33188445 microfilament and actin filament cross-linker protei... 32 0.37
gi|54112403 chromodomain helicase DNA binding protein 7 [Homo sa... 32 0.37
gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithor... 32 0.37
gi|58743369 hypothetical protein LOC139231 [Homo sapiens] 32 0.37
gi|57222568 myeloid/lymphoid or mixed-lineage leukemia (trithora... 32 0.48
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 31 0.63
gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo ... 31 0.63
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 31 0.63
gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo ... 31 0.63
gi|239746486 PREDICTED: hypothetical protein XP_002343772 [Homo ... 31 0.63
>gi|239752933 PREDICTED: hypothetical protein [Homo sapiens]
Length = 203
Score = 419 bits (1078), Expect = e-118
Identities = 203/203 (100%), Positives = 203/203 (100%)
Query: 1 MVGSRGTSNGRKAYAPYSRQGKRMSAAPTEATALSHSRSPQLPQPPQEQPGGLTTASAHL 60
MVGSRGTSNGRKAYAPYSRQGKRMSAAPTEATALSHSRSPQLPQPPQEQPGGLTTASAHL
Sbjct: 1 MVGSRGTSNGRKAYAPYSRQGKRMSAAPTEATALSHSRSPQLPQPPQEQPGGLTTASAHL 60
Query: 61 RSVGSGWVTRGGMKVRHSPSPASQRTIRSSWGCRSMHCRSIGTKARAAFSGSRLASSSGS 120
RSVGSGWVTRGGMKVRHSPSPASQRTIRSSWGCRSMHCRSIGTKARAAFSGSRLASSSGS
Sbjct: 61 RSVGSGWVTRGGMKVRHSPSPASQRTIRSSWGCRSMHCRSIGTKARAAFSGSRLASSSGS 120
Query: 121 SSSLVSGSDSGGSDLFTSSRARVSCSVILGPQFWDLPQGHLTCPDPVKLWPPQWVHCPFS 180
SSSLVSGSDSGGSDLFTSSRARVSCSVILGPQFWDLPQGHLTCPDPVKLWPPQWVHCPFS
Sbjct: 121 SSSLVSGSDSGGSDLFTSSRARVSCSVILGPQFWDLPQGHLTCPDPVKLWPPQWVHCPFS 180
Query: 181 DSFANKVFRKGLEKPERRHAAQS 203
DSFANKVFRKGLEKPERRHAAQS
Sbjct: 181 DSFANKVFRKGLEKPERRHAAQS 203
>gi|239747485 PREDICTED: hypothetical protein XP_002347546 [Homo
sapiens]
Length = 180
Score = 373 bits (958), Expect = e-104
Identities = 180/180 (100%), Positives = 180/180 (100%)
Query: 24 MSAAPTEATALSHSRSPQLPQPPQEQPGGLTTASAHLRSVGSGWVTRGGMKVRHSPSPAS 83
MSAAPTEATALSHSRSPQLPQPPQEQPGGLTTASAHLRSVGSGWVTRGGMKVRHSPSPAS
Sbjct: 1 MSAAPTEATALSHSRSPQLPQPPQEQPGGLTTASAHLRSVGSGWVTRGGMKVRHSPSPAS 60
Query: 84 QRTIRSSWGCRSMHCRSIGTKARAAFSGSRLASSSGSSSSLVSGSDSGGSDLFTSSRARV 143
QRTIRSSWGCRSMHCRSIGTKARAAFSGSRLASSSGSSSSLVSGSDSGGSDLFTSSRARV
Sbjct: 61 QRTIRSSWGCRSMHCRSIGTKARAAFSGSRLASSSGSSSSLVSGSDSGGSDLFTSSRARV 120
Query: 144 SCSVILGPQFWDLPQGHLTCPDPVKLWPPQWVHCPFSDSFANKVFRKGLEKPERRHAAQS 203
SCSVILGPQFWDLPQGHLTCPDPVKLWPPQWVHCPFSDSFANKVFRKGLEKPERRHAAQS
Sbjct: 121 SCSVILGPQFWDLPQGHLTCPDPVKLWPPQWVHCPFSDSFANKVFRKGLEKPERRHAAQS 180
>gi|239741357 PREDICTED: hypothetical protein XP_002342183 [Homo
sapiens]
Length = 180
Score = 373 bits (958), Expect = e-104
Identities = 180/180 (100%), Positives = 180/180 (100%)
Query: 24 MSAAPTEATALSHSRSPQLPQPPQEQPGGLTTASAHLRSVGSGWVTRGGMKVRHSPSPAS 83
MSAAPTEATALSHSRSPQLPQPPQEQPGGLTTASAHLRSVGSGWVTRGGMKVRHSPSPAS
Sbjct: 1 MSAAPTEATALSHSRSPQLPQPPQEQPGGLTTASAHLRSVGSGWVTRGGMKVRHSPSPAS 60
Query: 84 QRTIRSSWGCRSMHCRSIGTKARAAFSGSRLASSSGSSSSLVSGSDSGGSDLFTSSRARV 143
QRTIRSSWGCRSMHCRSIGTKARAAFSGSRLASSSGSSSSLVSGSDSGGSDLFTSSRARV
Sbjct: 61 QRTIRSSWGCRSMHCRSIGTKARAAFSGSRLASSSGSSSSLVSGSDSGGSDLFTSSRARV 120
Query: 144 SCSVILGPQFWDLPQGHLTCPDPVKLWPPQWVHCPFSDSFANKVFRKGLEKPERRHAAQS 203
SCSVILGPQFWDLPQGHLTCPDPVKLWPPQWVHCPFSDSFANKVFRKGLEKPERRHAAQS
Sbjct: 121 SCSVILGPQFWDLPQGHLTCPDPVKLWPPQWVHCPFSDSFANKVFRKGLEKPERRHAAQS 180
>gi|23397642 GREB1 protein isoform a [Homo sapiens]
Length = 1949
Score = 38.1 bits (87), Expect = 0.005
Identities = 39/119 (32%), Positives = 49/119 (41%), Gaps = 13/119 (10%)
Query: 8 SNGRKAYAPYSRQGKRMSAAPTEATALSHSRSPQLPQPPQEQPGGLTTASAHLRSVGSGW 67
S+ + A S G SA PT H+RSPQ P+ P E+ S G
Sbjct: 1129 SSSLSSKASGSALGGESSAQPTALPQGEHARSPQ-PRGPAEEGRAPGEKQRPRASQGPPS 1187
Query: 68 VTRGGMKVRHSPSPASQRTIRSSWGCRSMHCRSIGTKARAAFSGSRLASSSGSSSSLVS 126
RHSP P Q G RS+ + S S+L+SSSGSSSS V+
Sbjct: 1188 AIS-----RHSPGPTPQPDCSLRTGQRSV-------QVSVTSSCSQLSSSSGSSSSSVA 1234
>gi|28559039 mediator complex subunit 1 [Homo sapiens]
Length = 1581
Score = 37.4 bits (85), Expect = 0.009
Identities = 36/151 (23%), Positives = 60/151 (39%), Gaps = 5/151 (3%)
Query: 7 TSNGRKAYAPYSRQGKRMSAAPTEATALSHSRSPQLPQPPQEQPGGLTTA---SAHLRSV 63
+S+ R P S G + + + +P +P+ + P G S+H +
Sbjct: 1025 SSSNRPFTPPTSTGGSKSPGSAGRSQTPPGVATPPIPKITIQIPKGTVMVGKPSSHSQYT 1084
Query: 64 GSGWVTRGGMKVRHSPSPASQRTIRSSWGCRSMHCR--SIGTKARAAFSGSRLASSSGSS 121
SG V+ G K HS S +S + +S +S S + + +S + SS S
Sbjct: 1085 SSGSVSSSGSKSHHSHSSSSSSSASTSGKMKSSKSEGSSSSKLSSSMYSSQGSSGSSQSK 1144
Query: 122 SSLVSGSDSGGSDLFTSSRARVSCSVILGPQ 152
+S SG G S + + S S + PQ
Sbjct: 1145 NSSQSGGKPGSSPITKHGLSSGSSSTKMKPQ 1175
Score = 36.6 bits (83), Expect = 0.015
Identities = 48/158 (30%), Positives = 63/158 (39%), Gaps = 27/158 (17%)
Query: 10 GRKAYAPYSRQGKRMSAAP------TEATALSHSRSPQLPQPPQEQPGGLTTASAHLRSV 63
G+++ P S GK P TE + SHS S + PP G + SA
Sbjct: 993 GKRSRTP-SNDGKSKDKPPKRKKADTEGKSPSHSSSNRPFTPPTSTGGSKSPGSAGRSQT 1051
Query: 64 GSGWVT----------RGGMKVRHSPSPASQRTIR---SSWGCRSMHCRSIGTKARAAFS 110
G T G + PS SQ T SS G +S H S + + A+ S
Sbjct: 1052 PPGVATPPIPKITIQIPKGTVMVGKPSSHSQYTSSGSVSSSGSKSHHSHSSSSSSSASTS 1111
Query: 111 GSRLAS-SSGSSSSLVSGS------DSGGSDLFTSSRA 141
G +S S GSSSS +S S SG S SS++
Sbjct: 1112 GKMKSSKSEGSSSSKLSSSMYSSQGSSGSSQSKNSSQS 1149
>gi|151301137 AT-hook transcription factor [Homo sapiens]
Length = 1439
Score = 37.4 bits (85), Expect = 0.009
Identities = 40/121 (33%), Positives = 47/121 (38%), Gaps = 12/121 (9%)
Query: 6 GTSNGRKAYAPYSRQGKRMSAAPTEATALSHSRSPQLPQPPQEQPGGLTT------ASAH 59
G G + P RQ R S+ P E LS S +LP P TT A
Sbjct: 1141 GEPRGEEQIVPPGRQRARSSSVPREVLRLSLSSESELPSLPLFSEKSKTTKDSPQAARDG 1200
Query: 60 LRSVGS-GW---VTRGGMKVRHSPSPASQRTIRSSWGCRSM-HCRSIGTK-ARAAFSGSR 113
R VGS GW VT G H S + + G S HCR I T+ A A +G
Sbjct: 1201 KRGVGSAGWPDRVTFRGQYTGHEYHVLSPKAVPKGNGTVSCPHCRPIRTQDAGGAVTGDP 1260
Query: 114 L 114
L
Sbjct: 1261 L 1261
>gi|133922600 splicing factor, arginine/serine-rich 16 [Homo
sapiens]
Length = 674
Score = 36.2 bits (82), Expect = 0.020
Identities = 42/142 (29%), Positives = 56/142 (39%), Gaps = 5/142 (3%)
Query: 6 GTSNGRKAYAPYSRQGKRMSAAPTEATALSHSRSPQLPQPPQEQPGGLTTASAHLRSVGS 65
G + GR A A R+ S++ + A+ S SRS + GG + H RS
Sbjct: 364 GPAPGRNASA---RRRSSSSSSSSSASRTSSSRSSSRSSSRSRRGGGYYRSGRHARSRSR 420
Query: 66 GWVTRGGMKVRHSPSPASQRTIRSSWGCRSMHCRSIGTKARAAFSGSRLASSSGSSSSLV 125
W R+S S + R S G R H R + AR G R S S S S
Sbjct: 421 SWSRSRSRSRRYSRSRSRGRR-HSGGGSRDGH-RYSRSPARRGGYGPRRRSRSRSHSGDR 478
Query: 126 SGSDSGGSDLFTSSRARVSCSV 147
G +SSR+R S S+
Sbjct: 479 YRRGGRGLRHHSSSRSRSSWSL 500
Score = 32.0 bits (71), Expect = 0.37
Identities = 37/120 (30%), Positives = 48/120 (40%), Gaps = 4/120 (3%)
Query: 25 SAAPTEATALSHSRSPQLPQPPQEQPGGLTTASAHLRSVGSGWVTRGG-MKVRHSPSPAS 83
+AA A+ ++ + P PQP PG ASA RS S + S S +S
Sbjct: 342 AAAAAAASGVTTGKPPAPPQPGGPAPG--RNASARRRSSSSSSSSSASRTSSSRSSSRSS 399
Query: 84 QRTIRSSWGCRS-MHCRSIGTKARAAFSGSRLASSSGSSSSLVSGSDSGGSDLFTSSRAR 142
R+ R RS H RS + S SR S S S SG S ++ S AR
Sbjct: 400 SRSRRGGGYYRSGRHARSRSRSWSRSRSRSRRYSRSRSRGRRHSGGGSRDGHRYSRSPAR 459
Score = 30.8 bits (68), Expect = 0.83
Identities = 40/138 (28%), Positives = 49/138 (35%), Gaps = 24/138 (17%)
Query: 4 SRGTSNGRKAYAPYSRQGKRMSAAPTEATALSHSRSPQLPQPPQEQPGGLTTASAHLRSV 63
SR S GR+ SR G R S +P R + RS
Sbjct: 433 SRSRSRGRRHSGGGSRDGHRYSRSPARRGGYGPRR------------------RSRSRSH 474
Query: 64 GSGWVTRGGMKVRHSPSPASQRTIRSSWGCRSMHCRSIGTKARAAFSGSRLASSSGSSSS 123
RGG +RH S S RSSW RS+ T++R + S S S S S S
Sbjct: 475 SGDRYRRGGRGLRHHSSSRS----RSSWSLSPSRSRSL-TRSR-SHSPSPSQSRSRSRSR 528
Query: 124 LVSGSDSGGSDLFTSSRA 141
S S S + T A
Sbjct: 529 SQSPSPSPAREKLTRPAA 546
>gi|95147342 chromodomain helicase DNA binding protein 9 [Homo
sapiens]
Length = 2881
Score = 34.3 bits (77), Expect = 0.075
Identities = 42/143 (29%), Positives = 59/143 (41%), Gaps = 17/143 (11%)
Query: 16 PYSRQGKRMSAAPTEATALSHSRSPQ---LPQPPQEQPGG---------LTTASAHLRSV 63
P S + + MS+ T S SP+ LPQ +Q G + + L
Sbjct: 2056 PQSSEEESMSSVETRTLIKSEPVSPKNGVLPQATGDQKSGGKCETDRRMVAARTEPLTPN 2115
Query: 64 GSGWVTRGGMKVRHSPSPASQRTIRSSWGCRSMHCRSIGTKARAAFSGSRLASSSGSSSS 123
+ R + S S + + RSS C S RS + + ++ S SR SSS SSSS
Sbjct: 2116 PASKKPRVHKRGSESSSDSDSDSERSS--CSS---RSSSSSSSSSCSHSRSGSSSSSSSS 2170
Query: 124 LVSGSDSGGSDLFTSSRARVSCS 146
S S S S +SS + S S
Sbjct: 2171 CSSASSSSSSSTSSSSSSSSSSS 2193
Score = 30.0 bits (66), Expect = 1.4
Identities = 31/108 (28%), Positives = 43/108 (39%), Gaps = 10/108 (9%)
Query: 22 KRMSAAPTEATALSHSRSPQLPQPPQEQPGGLTTASAHLRSVGSGWVTRGGMKVRHSPSP 81
+RM AA TE P P P ++P + + S R R S S
Sbjct: 2102 RRMVAARTE---------PLTPNPASKKPR-VHKRGSESSSDSDSDSERSSCSSRSSSSS 2151
Query: 82 ASQRTIRSSWGCRSMHCRSIGTKARAAFSGSRLASSSGSSSSLVSGSD 129
+S S G S S + + ++ S + +SSS SSSS S SD
Sbjct: 2152 SSSSCSHSRSGSSSSSSSSCSSASSSSSSSTSSSSSSSSSSSEESDSD 2199
>gi|148237270 hypermethylated in cancer 1 isoform 2 [Homo sapiens]
Length = 733
Score = 33.1 bits (74), Expect = 0.17
Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 5 RGTSNGRKAYAPYSRQGKRMSAAPTEATALSHSRSPQLPQPPQEQPGG----LTTASAHL 60
RG G YAPY R G+ + AA A S P P E P G + T A L
Sbjct: 159 RGGGGGGGGYAPYGRPGRGLRAATPVIQACYPSPVGPPPPPAAEPPSGPEAAVNTHCAEL 218
Query: 61 RSVGSG 66
+ G G
Sbjct: 219 YASGPG 224
>gi|61676186 hypermethylated in cancer 1 isoform 1 [Homo sapiens]
Length = 714
Score = 33.1 bits (74), Expect = 0.17
Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 5 RGTSNGRKAYAPYSRQGKRMSAAPTEATALSHSRSPQLPQPPQEQPGG----LTTASAHL 60
RG G YAPY R G+ + AA A S P P E P G + T A L
Sbjct: 140 RGGGGGGGGYAPYGRPGRGLRAATPVIQACYPSPVGPPPPPAAEPPSGPEAAVNTHCAEL 199
Query: 61 RSVGSG 66
+ G G
Sbjct: 200 YASGPG 205
>gi|151301154 mucin 6, gastric [Homo sapiens]
Length = 2439
Score = 33.1 bits (74), Expect = 0.17
Identities = 44/154 (28%), Positives = 63/154 (40%), Gaps = 17/154 (11%)
Query: 31 ATALSH--SRSPQLPQPPQEQPGG--LTTASAHLRSVGSGWVTRGGMKVRHSPSPASQRT 86
ATA S S S LPQ +P +TT HL S + T + SPSP++ T
Sbjct: 2081 ATASSSFISSSSWLPQNSSSRPPSSPITTQLPHLSSATTPVSTTNQLSSSFSPSPSAPST 2140
Query: 87 IRSSWGCRSMHCRSIGTKARAAFSGSRLASSSGSSSSLVSGSDSGGSDLFTSSRARVSCS 146
+ S S H S T + + + S S+ S++L SGS S + S + S
Sbjct: 2141 VSSY--VPSSH-SSPQTSSPSVGTSSSFVSAPVHSTTLSSGSHS------SLSTHPTTAS 2191
Query: 147 VILGPQFWDLPQGHLTCPDPVKLWPPQWVHCPFS 180
V P F P T ++ P + PF+
Sbjct: 2192 VSASPLFPSSPAASTT----IRATLPHTISSPFT 2221
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 33.1 bits (74), Expect = 0.17
Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 78 SPSPASQRTIRSSWGCRSMHCRSIGTKARAAFSGSRLASSSGSSSSLVSGSDSGGSDLFT 137
SP+PA + +R R K R++ S S +SSS SSSS S S S S +
Sbjct: 2581 SPTPAPKEAVREG---RPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2637
Query: 138 SSRARVSCS 146
SS + S S
Sbjct: 2638 SSSSSSSSS 2646
Score = 30.0 bits (66), Expect = 1.4
Identities = 31/130 (23%), Positives = 51/130 (39%), Gaps = 11/130 (8%)
Query: 5 RGTSNGRKAYAPYSRQGKRMSAAPTEATALSHSRSPQLPQPPQEQPGGLTTASAHLRSVG 64
R +S+ + + S S++ + ++ S S LP P+ L+ V
Sbjct: 2531 RSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQPE----------VALKRVP 2580
Query: 65 SGW-VTRGGMKVRHSPSPASQRTIRSSWGCRSMHCRSIGTKARAAFSGSRLASSSGSSSS 123
S + ++ P P + R S S S + + ++ S S +SSS SSSS
Sbjct: 2581 SPTPAPKEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2640
Query: 124 LVSGSDSGGS 133
S S S S
Sbjct: 2641 SSSSSSSSPS 2650
Score = 28.1 bits (61), Expect = 5.3
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 100 SIGTKARAAFSGSRLASSSGSSSSLVSGSDSGGSDL 135
S + + ++ S S +SSS SSSS S SDS GS L
Sbjct: 2533 SSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSL 2568
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 32.7 bits (73), Expect = 0.22
Identities = 30/127 (23%), Positives = 52/127 (40%)
Query: 25 SAAPTEATALSHSRSPQLPQPPQEQPGGLTTASAHLRSVGSGWVTRGGMKVRHSPSPASQ 84
S++ + +++ S S + + + GG T + + S + S S +S
Sbjct: 2567 SSSSSSSSSSSGSETEGEEEGDKNGDGGCGTGGRNCSAASSRAASPASSSSSSSSSSSSS 2626
Query: 85 RTIRSSWGCRSMHCRSIGTKARAAFSGSRLASSSGSSSSLVSGSDSGGSDLFTSSRARVS 144
+ SS S S + + ++ S S +SSS SSSS S S + D SS +
Sbjct: 2627 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDEDSSCSSDDEAA 2686
Query: 145 CSVILGP 151
+ GP
Sbjct: 2687 PAPTAGP 2693
>gi|33356174 pinin, desmosome associated protein [Homo sapiens]
Length = 717
Score = 32.7 bits (73), Expect = 0.22
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 69 TRGGMKVRHSPSPASQRTIRSSWGCRSMHCRSIGTKARAAFSGSRLASSSGSSSSLVSGS 128
+R + R+ S + R+ SS S S G+ + + S SR SS SSSS SGS
Sbjct: 560 SRSRGRARNKTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSR---SSSSSSSSTSGS 616
Query: 129 DSGGSDLFTSS 139
S S TSS
Sbjct: 617 SSRDSSSSTSS 627
Score = 31.6 bits (70), Expect = 0.48
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 77 HSPSPASQRTIRSSWGCRSMHCRSIGTKARAAFSGSRLASSSGSSSSLVSGSDSGGSDLF 136
H S + +T S G R+ +K+R+ S S +SSS +SSS S S SG S
Sbjct: 549 HPESKSKTKTRSRSRG----RARNKTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSR 604
Query: 137 TSSRARVSCS 146
+SS + S S
Sbjct: 605 SSSSSSSSTS 614
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 32.7 bits (73), Expect = 0.22
Identities = 25/92 (27%), Positives = 34/92 (36%), Gaps = 26/92 (28%)
Query: 3 GSRGTSNGRKAYAPYSRQGKRMSAAPTEATALSHSRSP----QLPQPPQEQPGGLTTASA 58
GS +S+ ++ +P + KR S+ P + LS S SP P PP P
Sbjct: 357 GSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSASPPRRRHRPSPPATPPP------- 409
Query: 59 HLRSVGSGWVTRGGMKVRHSPSPASQRTIRSS 90
K RHSP+P R S
Sbjct: 410 ---------------KTRHSPTPQQSNRTRKS 426
Score = 28.1 bits (61), Expect = 5.3
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 4/84 (4%)
Query: 11 RKAYAPYSRQGKRMSAAPTEATALSHSRSPQLPQPPQEQPGGLTTASAHLRSVGSGWVTR 70
R+ +P +R S +P +SHS P+ P + + +S H + TR
Sbjct: 612 RRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSPSLSSKHRKGSSPSRSTR 671
Query: 71 GGM----KVRHSPSPASQRTIRSS 90
RHSPSP + SS
Sbjct: 672 EARSPQPNKRHSPSPRPRAPQTSS 695
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 32.3 bits (72), Expect = 0.28
Identities = 30/97 (30%), Positives = 35/97 (36%), Gaps = 21/97 (21%)
Query: 3 GSRGTSNGRKAYAPYSRQG-----KRMSAAPTEATALSHSRSPQLPQPP----------- 46
GS G+S+G P R G KR +P + R P LP PP
Sbjct: 1406 GSSGSSSGGGGGGPGGRTGPGRGDKRSWPSPKNRSRPPEERPPGLPLPPPPPSSSAVFRL 1465
Query: 47 ----QEQPGGLTTASAHLRSVGSGWVTRGGMKVRHSP 79
P G+ A A L S G VT G RH P
Sbjct: 1466 DQVIHSNPAGIQQALAQLSS-RQGSVTAPGGHPRHKP 1501
>gi|239752939 PREDICTED: hypothetical protein [Homo sapiens]
Length = 310
Score = 32.0 bits (71), Expect = 0.37
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 65 SGWVTRGGMKVRHSPSPASQRTIRSSWGCRSMHCRS-IGTKARAAFSGSRLASSSGSSSS 123
+G +T GG+K+++ SPA + R S G R+ + G+ A S R +S+S SSS+
Sbjct: 156 AGHLTCGGLKLKYRASPAGRLRRRGSTGLRAQGASAGSGSVWPRAASCLRASSASRSSSA 215
Query: 124 LVSGSDSGGSDLFTSSRARVSCS 146
+ +S AR S S
Sbjct: 216 RACSLSRSRASRLPASVARSSPS 238
>gi|239747479 PREDICTED: hypothetical protein XP_002347544 [Homo
sapiens]
Length = 310
Score = 32.0 bits (71), Expect = 0.37
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 65 SGWVTRGGMKVRHSPSPASQRTIRSSWGCRSMHCRS-IGTKARAAFSGSRLASSSGSSSS 123
+G +T GG+K+++ SPA + R S G R+ + G+ A S R +S+S SSS+
Sbjct: 156 AGHLTCGGLKLKYRASPAGRLRRRGSTGLRAQGASAGSGSVWPRAASCLRASSASRSSSA 215
Query: 124 LVSGSDSGGSDLFTSSRARVSCS 146
+ +S AR S S
Sbjct: 216 RACSLSRSRASRLPASVARSSPS 238
>gi|239741351 PREDICTED: hypothetical protein XP_002342181 [Homo
sapiens]
Length = 310
Score = 32.0 bits (71), Expect = 0.37
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 65 SGWVTRGGMKVRHSPSPASQRTIRSSWGCRSMHCRS-IGTKARAAFSGSRLASSSGSSSS 123
+G +T GG+K+++ SPA + R S G R+ + G+ A S R +S+S SSS+
Sbjct: 156 AGHLTCGGLKLKYRASPAGRLRRRGSTGLRAQGASAGSGSVWPRAASCLRASSASRSSSA 215
Query: 124 LVSGSDSGGSDLFTSSRARVSCS 146
+ +S AR S S
Sbjct: 216 RACSLSRSRASRLPASVARSSPS 238
>gi|33188443 microfilament and actin filament cross-linker protein
isoform b [Homo sapiens]
Length = 5938
Score = 32.0 bits (71), Expect = 0.37
Identities = 39/145 (26%), Positives = 55/145 (37%), Gaps = 17/145 (11%)
Query: 6 GTSNGRKAYAPYSRQGKRMS--AAPTEATALSHSRSPQLPQPPQEQPGGLTTASAHLRSV 63
G S G + R+ K S A+PT S S + Q P T ++ + +
Sbjct: 5757 GASQGMTPFRSRGRRSKPSSRAASPTR----SSSSASQSNHSCTSMPSSPATPASGTKVI 5812
Query: 64 GSGWVTRGGMKVRHSPSPASQRTIRSSWGCRSMHCRSIGTKAR-------AAFSGSRLAS 116
S G R +P+ S RT + S S G K A+ GSR S
Sbjct: 5813 PSS----GSKLKRPTPTFHSSRTSLAGDTSNSSSPASTGAKTNRADPKKSASRPGSRAGS 5868
Query: 117 SSGSSSSLVSGSDSGGSDLFTSSRA 141
+GS +S GSD+ DL + A
Sbjct: 5869 RAGSRASSRRGSDASDFDLLETQSA 5893
>gi|33188445 microfilament and actin filament cross-linker protein
isoform a [Homo sapiens]
Length = 5430
Score = 32.0 bits (71), Expect = 0.37
Identities = 39/145 (26%), Positives = 55/145 (37%), Gaps = 17/145 (11%)
Query: 6 GTSNGRKAYAPYSRQGKRMS--AAPTEATALSHSRSPQLPQPPQEQPGGLTTASAHLRSV 63
G S G + R+ K S A+PT S S + Q P T ++ + +
Sbjct: 5249 GASQGMTPFRSRGRRSKPSSRAASPTR----SSSSASQSNHSCTSMPSSPATPASGTKVI 5304
Query: 64 GSGWVTRGGMKVRHSPSPASQRTIRSSWGCRSMHCRSIGTKAR-------AAFSGSRLAS 116
S G R +P+ S RT + S S G K A+ GSR S
Sbjct: 5305 PSS----GSKLKRPTPTFHSSRTSLAGDTSNSSSPASTGAKTNRADPKKSASRPGSRAGS 5360
Query: 117 SSGSSSSLVSGSDSGGSDLFTSSRA 141
+GS +S GSD+ DL + A
Sbjct: 5361 RAGSRASSRRGSDASDFDLLETQSA 5385
>gi|54112403 chromodomain helicase DNA binding protein 7 [Homo
sapiens]
Length = 2997
Score = 32.0 bits (71), Expect = 0.37
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 5/92 (5%)
Query: 3 GSRGTSNGRKAYAPYSRQGKRMSAAPTEATALSHSRSPQLPQPPQEQPGGLTTAS--AHL 60
G + +G+ S G R P + A + PQ PQPPQ P G H+
Sbjct: 128 GMQNERHGQSFVDSSSMWGPRAVQVPDQIRAPYQQQQPQ-PQPPQPAPSGPPAQGHPQHM 186
Query: 61 RSVGSGWVTRGGMKVRHSPSPASQRTIRSSWG 92
+ +GS ++ RG ++ P QR + S G
Sbjct: 187 QQMGS-YMARGDFSMQQHGQP-QQRMSQFSQG 216
>gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 3 [Homo sapiens]
Length = 568
Score = 32.0 bits (71), Expect = 0.37
Identities = 20/51 (39%), Positives = 27/51 (52%)
Query: 94 RSMHCRSIGTKARAAFSGSRLASSSGSSSSLVSGSDSGGSDLFTSSRARVS 144
RS+H S + + ++ S S +SSS SSSS S S S S +SS S
Sbjct: 144 RSIHTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSFS 194
Score = 31.2 bits (69), Expect = 0.63
Identities = 21/53 (39%), Positives = 28/53 (52%)
Query: 99 RSIGTKARAAFSGSRLASSSGSSSSLVSGSDSGGSDLFTSSRARVSCSVILGP 151
RSI T + ++ S S +SSS SSSS S S S S +SS + S + P
Sbjct: 144 RSIHTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSFSKP 196
>gi|58743369 hypothetical protein LOC139231 [Homo sapiens]
Length = 388
Score = 32.0 bits (71), Expect = 0.37
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 77 HSPSPASQRTIRSSWGCRSMHCRSIGTKARAAFSGSRLASSSGSSSSLVSGSDSGGSDLF 136
HSP QR R +W + C S + A+ AS+S SS+S+VS + S GS +
Sbjct: 251 HSPR---QRPAREAWKRSNFSCASTSGVSGAS------ASASSSSASMVSSASSSGSSVG 301
Query: 137 TSS 139
S+
Sbjct: 302 NSA 304
>gi|57222568 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 6 [Homo sapiens]
Length = 1093
Score = 31.6 bits (70), Expect = 0.48
Identities = 45/164 (27%), Positives = 58/164 (35%), Gaps = 31/164 (18%)
Query: 4 SRGTSNGRKAYAPYSRQGKRMSAAPTEATALSHSRSPQL---PQPPQEQPGGLTTASAHL 60
S TS+ +A AP K + A+A +H R P L P P E P H
Sbjct: 410 STTTSSSGRARAPSPGDYKSPHVTGSGASAGTHKRMPALSATPVPADETPETGLKEKKHK 469
Query: 61 RSVGSGWVTRGGMKVRHSPS-PASQRTIRSSWG-----CRSMHCRSIGTKARAAFSGSRL 114
S S RH P P R + G S A + FSG L
Sbjct: 470 ASKRS----------RHGPGRPKGSRNKEGTGGPAAPSLPSAQLAGFTATAASPFSGGSL 519
Query: 115 ASS------------SGSSSSLVSGSDSGGSDLFTSSRARVSCS 146
SS SGS SL S G+ ++TS++ +S S
Sbjct: 520 VSSGLGGLSSRTFGPSGSLPSLSLESPLLGAGIYTSNKDPISHS 563
Score = 30.0 bits (66), Expect = 1.4
Identities = 33/130 (25%), Positives = 53/130 (40%), Gaps = 10/130 (7%)
Query: 4 SRGTSNGRKAYAPYSRQGKRMSAAPTEATALSHSRSPQLPQPPQEQPGGLTTASAHLRSV 63
S S ++ + + +G++ S E H + P+ P P P + TA S
Sbjct: 220 SASPSTQQEKHPTHHERGQKKSRKDKERLKQKHKKRPESP-PSILTPPVVPTADKVSSSA 278
Query: 64 GSGWVTRGGMKVRHSPSPASQRTIRSSWGCRSMHCRSIGTKARAAFSGSRLAS-SSGSSS 122
S + + + + R S G +S S+ K + SG ++S +S SSS
Sbjct: 279 SSS-------SHHEASTQETSESSRESKGKKSSS-HSLSHKGKKLSSGKGVSSFTSASSS 330
Query: 123 SLVSGSDSGG 132
S S S SGG
Sbjct: 331 SSSSSSSSGG 340
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 31.2 bits (69), Expect = 0.63
Identities = 30/117 (25%), Positives = 47/117 (40%), Gaps = 17/117 (14%)
Query: 3 GSRGTSNGRKAYAPYSRQGKRMSAAPTEATALSHSRSPQLPQPPQEQPG-GLTTASAHLR 61
G+R ++G P +R AA TE L P+PP E P +++AS H
Sbjct: 159 GARRDTSGPTPGTPSPAMARRSRAAGTEV-GLPRPAPSARPRPPTEGPRKSVSSASEHST 217
Query: 62 SVGSGWVTRGGMKVRHSPSPASQRTIRSSWGCRSMHCRSIGTKARAAFSGSRLASSS 118
+ PSPA++R + G + RS+ + A S +R S+
Sbjct: 218 T---------------EPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGPSA 259
>gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo
sapiens]
Length = 355
Score = 31.2 bits (69), Expect = 0.63
Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Query: 2 VGSRGTSNGRKAYAPYSRQGKRMSAAPTEATALSHSRSPQLPQPPQEQPGGLTTA---SA 58
+GS G S G P++ P + + SP+LP P +P T+A S
Sbjct: 66 IGSSGGSRGPSPAHPWTTP----QPGPPHQPGFNPASSPRLPLPADSEPDAYTSAPRGSG 121
Query: 59 HLRSVGSGWVTRGGMKVRHSPSPASQRTIR 88
G+G GG +++ + +S R R
Sbjct: 122 PTYCAGAGNSRAGGGLTKYNSAHSSSRVPR 151
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 31.2 bits (69), Expect = 0.63
Identities = 30/117 (25%), Positives = 47/117 (40%), Gaps = 17/117 (14%)
Query: 3 GSRGTSNGRKAYAPYSRQGKRMSAAPTEATALSHSRSPQLPQPPQEQPG-GLTTASAHLR 61
G+R ++G P +R AA TE L P+PP E P +++AS H
Sbjct: 159 GARRDTSGPTPGTPSPAMARRSRAAGTEV-GLPRPAPSARPRPPTEGPRKSVSSASEHST 217
Query: 62 SVGSGWVTRGGMKVRHSPSPASQRTIRSSWGCRSMHCRSIGTKARAAFSGSRLASSS 118
+ PSPA++R + G + RS+ + A S +R S+
Sbjct: 218 T---------------EPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGPSA 259
>gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo
sapiens]
Length = 355
Score = 31.2 bits (69), Expect = 0.63
Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Query: 2 VGSRGTSNGRKAYAPYSRQGKRMSAAPTEATALSHSRSPQLPQPPQEQPGGLTTA---SA 58
+GS G S G P++ P + + SP+LP P +P T+A S
Sbjct: 66 IGSSGGSRGPSPAHPWTTP----QPGPPHQPGFNPASSPRLPLPADSEPDAYTSAPRGSG 121
Query: 59 HLRSVGSGWVTRGGMKVRHSPSPASQRTIR 88
G+G GG +++ + +S R R
Sbjct: 122 PTYCAGAGNSRAGGGLTKYNSAHSSSRVPR 151
>gi|239746486 PREDICTED: hypothetical protein XP_002343772 [Homo
sapiens]
Length = 271
Score = 31.2 bits (69), Expect = 0.63
Identities = 30/117 (25%), Positives = 39/117 (33%), Gaps = 15/117 (12%)
Query: 18 SRQGKRMSAAPTEATALSHSRSPQLPQPPQEQPGGLTTASAHLRSVGSGWVTRGGMKVRH 77
S R AA SR + P+ + GGLTTA L + + T
Sbjct: 66 SNARSRGRAAKVAEPCFPPSRGTKPPRRVAARTGGLTTARGRLSTAAAKGATH------- 118
Query: 78 SPSPASQRTIRSSWGCRSMHCRSIGTKARAAFSGSRLASSSGSSSSLVSGSDSGGSD 134
P S R SWG S G + G L S + + VS G+D
Sbjct: 119 --PPVSFPRTRESWGAHS------GKEDETLHQGQGLTSLAAFPGASVSPDGESGAD 167
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.127 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,265,083
Number of Sequences: 37866
Number of extensions: 482454
Number of successful extensions: 3424
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 99
Number of HSP's that attempted gapping in prelim test: 2932
Number of HSP's gapped (non-prelim): 390
length of query: 203
length of database: 18,247,518
effective HSP length: 97
effective length of query: 106
effective length of database: 14,574,516
effective search space: 1544898696
effective search space used: 1544898696
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.