Search of human proteins with 239752827

Search of human proteins with 239752827

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239752827 PREDICTED: hypothetical protein [Homo sapiens]
         (97 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239752827 PREDICTED: hypothetical protein [Homo sapiens]           204   9e-54
gi|239747386 PREDICTED: hypothetical protein XP_002346570 [Homo ...   204   9e-54
gi|239741211 PREDICTED: hypothetical protein XP_002342098 [Homo ...   204   9e-54
gi|239752594 PREDICTED: hypothetical protein, partial [Homo sapi...    36   0.006
gi|239752252 PREDICTED: hypothetical protein XP_002348181 [Homo ...    36   0.006
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin...    36   0.006
gi|8567388 period 3 [Homo sapiens]                                     35   0.010
gi|157739864 ubiquitination factor E4B isoform 1 [Homo sapiens]        35   0.010
gi|169163027 PREDICTED: similar to Putative acrosin-like proteas...    35   0.013
gi|197333837 notochord homeobox [Homo sapiens]                         35   0.017
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]         35   0.017
gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo...    33   0.037
gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo...    33   0.037
gi|58331253 obscurin, cytoskeletal calmodulin and titin-interact...    33   0.049
gi|169208488 PREDICTED: hypothetical protein [Homo sapiens]            33   0.049
gi|148886752 immunoglobulin superfamily, member 9B [Homo sapiens]      33   0.049
gi|239754709 PREDICTED: hypothetical protein [Homo sapiens]            33   0.064
gi|239749260 PREDICTED: hypothetical protein [Homo sapiens]            33   0.064
gi|239743356 PREDICTED: hypothetical protein XP_002342826 [Homo ...    33   0.064
gi|239509045 PREDICTED: hypothetical protein [Homo sapiens]            33   0.064
gi|4826964 UV excision repair protein RAD23 homolog A [Homo sapi...    33   0.064
gi|21359935 Down syndrome cell adhesion molecule like 1 [Homo sa...    32   0.083
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]     32   0.083
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre...    32   0.083
gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3 pre...    32   0.083
gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2 pre...    32   0.083
gi|24431933 reticulon 4 isoform B [Homo sapiens]                       32   0.11 
gi|47519490 reticulon 4 isoform D [Homo sapiens]                       32   0.11 
gi|24431935 reticulon 4 isoform A [Homo sapiens]                       32   0.11 
gi|119943102 CREB binding protein isoform b [Homo sapiens]             32   0.11 

>gi|239752827 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 97

 Score =  204 bits (520), Expect = 9e-54
 Identities = 97/97 (100%), Positives = 97/97 (100%)

Query: 1  MPSASRSPMRYPLRHGATCWSLSASAMLSQRRRPRALPTAPPVVSVTETQPPRSGHCHPP 60
          MPSASRSPMRYPLRHGATCWSLSASAMLSQRRRPRALPTAPPVVSVTETQPPRSGHCHPP
Sbjct: 1  MPSASRSPMRYPLRHGATCWSLSASAMLSQRRRPRALPTAPPVVSVTETQPPRSGHCHPP 60

Query: 61 QTPAAGSRSPRSGRPSTRSATQLSQGRPQSDGPTWSV 97
          QTPAAGSRSPRSGRPSTRSATQLSQGRPQSDGPTWSV
Sbjct: 61 QTPAAGSRSPRSGRPSTRSATQLSQGRPQSDGPTWSV 97


>gi|239747386 PREDICTED: hypothetical protein XP_002346570 [Homo
          sapiens]
          Length = 97

 Score =  204 bits (520), Expect = 9e-54
 Identities = 97/97 (100%), Positives = 97/97 (100%)

Query: 1  MPSASRSPMRYPLRHGATCWSLSASAMLSQRRRPRALPTAPPVVSVTETQPPRSGHCHPP 60
          MPSASRSPMRYPLRHGATCWSLSASAMLSQRRRPRALPTAPPVVSVTETQPPRSGHCHPP
Sbjct: 1  MPSASRSPMRYPLRHGATCWSLSASAMLSQRRRPRALPTAPPVVSVTETQPPRSGHCHPP 60

Query: 61 QTPAAGSRSPRSGRPSTRSATQLSQGRPQSDGPTWSV 97
          QTPAAGSRSPRSGRPSTRSATQLSQGRPQSDGPTWSV
Sbjct: 61 QTPAAGSRSPRSGRPSTRSATQLSQGRPQSDGPTWSV 97


>gi|239741211 PREDICTED: hypothetical protein XP_002342098 [Homo
          sapiens]
          Length = 97

 Score =  204 bits (520), Expect = 9e-54
 Identities = 97/97 (100%), Positives = 97/97 (100%)

Query: 1  MPSASRSPMRYPLRHGATCWSLSASAMLSQRRRPRALPTAPPVVSVTETQPPRSGHCHPP 60
          MPSASRSPMRYPLRHGATCWSLSASAMLSQRRRPRALPTAPPVVSVTETQPPRSGHCHPP
Sbjct: 1  MPSASRSPMRYPLRHGATCWSLSASAMLSQRRRPRALPTAPPVVSVTETQPPRSGHCHPP 60

Query: 61 QTPAAGSRSPRSGRPSTRSATQLSQGRPQSDGPTWSV 97
          QTPAAGSRSPRSGRPSTRSATQLSQGRPQSDGPTWSV
Sbjct: 61 QTPAAGSRSPRSGRPSTRSATQLSQGRPQSDGPTWSV 97


>gi|239752594 PREDICTED: hypothetical protein, partial [Homo
           sapiens]
          Length = 673

 Score = 36.2 bits (82), Expect = 0.006
 Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 8/92 (8%)

Query: 5   SRSPMRYPLRHGATCWSLSASAMLSQRRRPRALPTAPPVVSVTETQPPRSGHCHPPQTPA 64
           S SP   P R   T   + +SA+L++     ++   PP  S TET P  S    PP+   
Sbjct: 588 SASPTGMPSRTSPT--GMPSSALLTKMDSTASITRTPPRASPTETPPRASPTGTPPRASP 645

Query: 65  AGS--RSPRSGRPSTRSATQLSQGRPQSDGPT 94
            G+  R+  +G P   S T    G P    PT
Sbjct: 646 TGTPPRASPTGTPPRASPT----GTPSRASPT 673



 Score = 30.0 bits (66), Expect = 0.41
 Identities = 32/103 (31%), Positives = 42/103 (40%), Gaps = 24/103 (23%)

Query: 4   ASRSPMRYPLRHGATCWSLSASAMLSQRRRPRALPTA----------PPVVSVTETQPPR 53
           ++ SP   P R   +    +AS M   R  PRA PT               S++ T PPR
Sbjct: 282 STASPTGTPSRASLSMTPSTASLM---RMLPRASPTGMLSRTSLTKMDSTASISRT-PPR 337

Query: 54  SGHCHPPQTPAAGSRSPRSGRPSTRSATQLSQGRPQSDGPTWS 96
           +     P      SR+  +G+PST S T    G P    PT S
Sbjct: 338 ASITRTP------SRASPTGKPSTASPT----GTPSRASPTGS 370



 Score = 26.2 bits (56), Expect = 6.0
 Identities = 29/105 (27%), Positives = 37/105 (35%), Gaps = 15/105 (14%)

Query: 1   MPSASRSPMRYPLRHGATCWSLSASAMLSQRRRPRALPTAPPVVSVTETQPPRSGHCHPP 60
           MPS + SP   P     T    +AS     R   RA PT  P  +     PPR+     P
Sbjct: 187 MPSRT-SPTGMPSTASLTKMDSTASIT---RTLSRASPTGTPPRASPTGSPPRASLSMMP 242

Query: 61  QTPAAGSRSPRSGRPSTRSATQLSQ-----------GRPQSDGPT 94
            T       PR+      S T L++            RP +  PT
Sbjct: 243 STALLIRTPPRASPTGMLSRTSLTKMDSTASITRTPSRPSTASPT 287


>gi|239752252 PREDICTED: hypothetical protein XP_002348181 [Homo
          sapiens]
          Length = 311

 Score = 36.2 bits (82), Expect = 0.006
 Identities = 18/53 (33%), Positives = 25/53 (47%)

Query: 39 TAPPVVSVTETQPPRSGHCHPPQTPAAGSRSPRSGRPSTRSATQLSQGRPQSD 91
          +AP + S        SG   PP +P  G+  P +GRP   +A   S G+P  D
Sbjct: 45 SAPCLQSAPACSVTASGRAAPPSSPHPGASPPAAGRPLRETAESWSPGQPGGD 97


>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
           tract binding protein associated) [Homo sapiens]
          Length = 707

 Score = 36.2 bits (82), Expect = 0.006
 Identities = 20/60 (33%), Positives = 27/60 (45%)

Query: 34  PRALPTAPPVVSVTETQPPRSGHCHPPQTPAAGSRSPRSGRPSTRSATQLSQGRPQSDGP 93
           P A  +APP    T   PP SG    P  P A + +P    P T  ++ +    PQ+ GP
Sbjct: 125 PPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGP 184


>gi|8567388 period 3 [Homo sapiens]
          Length = 1201

 Score = 35.4 bits (80), Expect = 0.010
 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 1/74 (1%)

Query: 21   SLSASAMLSQRRRPRALPTAPPVVSVTETQPPRSGHCHPPQTPAAGSRSPRSGRPSTRSA 80
            S + +  LS    PR  P+ P   +++   PP     HP  + A  + SP    PS  +A
Sbjct: 965  SPATTGALSTGSPPRENPSHPTASALSTGSPPMKNPSHPTAS-ALSTGSPPMKNPSHPTA 1023

Query: 81   TQLSQGRPQSDGPT 94
            + LS G P S  P+
Sbjct: 1024 STLSMGLPPSRTPS 1037


>gi|157739864 ubiquitination factor E4B isoform 1 [Homo sapiens]
          Length = 1302

 Score = 35.4 bits (80), Expect = 0.010
 Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 20  WSLSASAMLSQRRRPRALPTAPPVV--SVTETQPPRSGHCHPPQTPAAGSRSPRSGRPS 76
           W+ S  ++LS    P AL ++P  V  S +  +P  +G   PP +P+A SR P S R S
Sbjct: 339 WASSGVSILSSSPSPPALASSPQAVPASSSRQRPSSTGPPLPPASPSATSRRPSSLRIS 397


>gi|169163027 PREDICTED: similar to Putative acrosin-like protease
           [Homo sapiens]
          Length = 355

 Score = 35.0 bits (79), Expect = 0.013
 Identities = 27/85 (31%), Positives = 35/85 (41%), Gaps = 8/85 (9%)

Query: 2   PSASRSPMRYPLRHGATCWSLSASAMLSQRRRPRALPTAPPVVSVTETQPPRSGHCHPPQ 61
           P+    P+R P  H      LSA      +  PR LP  PP     + +PP S    PP 
Sbjct: 239 PTTRPPPIRPPFSH-----PLSAHLPWYFQPPPRPLPPRPPAA---QPRPPPSPPPPPPP 290

Query: 62  TPAAGSRSPRSGRPSTRSATQLSQG 86
            P+     P    P+  S T+L QG
Sbjct: 291 PPSPLPPPPPPPPPTPSSTTKLPQG 315


>gi|197333837 notochord homeobox [Homo sapiens]
          Length = 251

 Score = 34.7 bits (78), Expect = 0.017
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 4/65 (6%)

Query: 33 RPRALPTAPPVVSVTETQPPRSGHCHPPQTPAAGSRSPRS-GRPSTRSATQLSQGRPQSD 91
          RPR  P  PP  S +  +PPRSG    P++P  G  +PR+ GR  +  + +    RP   
Sbjct: 5  RPRGSP--PPAPSGSRVRPPRSGRSPAPRSP-TGPNTPRAPGRFESPFSVEAILARPDPC 61

Query: 92 GPTWS 96
           P  S
Sbjct: 62 APAAS 66


>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
          Length = 904

 Score = 34.7 bits (78), Expect = 0.017
 Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 17/97 (17%)

Query: 5   SRSPMRYPLRHGATCWSLSASAMLSQRRRPRALPTAPPV-----------VSVTETQPPR 53
           SRSP+R   R  A   SLS S+  S   R R+ P  PP            +S + + P R
Sbjct: 341 SRSPVRRRRRSSA---SLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSASPPRR 397

Query: 54  SGHCHPPQTPAAGSR---SPRSGRPSTRSATQLSQGR 87
                PP TP   +R   +P+    + +S   +S GR
Sbjct: 398 RHRPSPPATPPPKTRHSPTPQQSNRTRKSRVSVSPGR 434



 Score = 28.1 bits (61), Expect = 1.6
 Identities = 19/45 (42%), Positives = 19/45 (42%), Gaps = 2/45 (4%)

Query: 31  RRRPRALPTAPPVVSVTETQPPRSGHCHPPQTPAAGSRSPRSGRP 75
           RRR    P  PP    T T PPR     PP  P   S SPR   P
Sbjct: 556 RRRRSPSPAPPPRRRRTPTPPPRRRTPSPP--PRRRSPSPRRYSP 598



 Score = 26.2 bits (56), Expect = 6.0
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 11/68 (16%)

Query: 32  RRPRALPTAPPVVSVTETQPP--RSGHCHPPQ---TPAAGSRSP------RSGRPSTRSA 80
           +R  A P  PP    + + PP  R  H  PP+   +P    RSP      R G   +RS 
Sbjct: 611 KRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSPSLSSKHRKGSSPSRST 670

Query: 81  TQLSQGRP 88
            +    +P
Sbjct: 671 REARSPQP 678


>gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo
           sapiens]
          Length = 870

 Score = 33.5 bits (75), Expect = 0.037
 Identities = 27/88 (30%), Positives = 36/88 (40%), Gaps = 5/88 (5%)

Query: 12  PLRHGATCWSLSASAMLSQRRRPRALPTAPPVVSV-----TETQPPRSGHCHPPQTPAAG 66
           P R       LS S    +R+ P   P   P VS      +     R+    PP + AA 
Sbjct: 638 PARARGEIGGLSLSPSPERRKPPPPDPATKPKVSWIHGKHSAAAAGRAPSPPPPGSEAAP 697

Query: 67  SRSPRSGRPSTRSATQLSQGRPQSDGPT 94
           S S R   PS +SA  +  G P++  PT
Sbjct: 698 SPSKRKRTPSDKSAHTVEHGSPRTRDPT 725


>gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo
           sapiens]
          Length = 865

 Score = 33.5 bits (75), Expect = 0.037
 Identities = 27/88 (30%), Positives = 36/88 (40%), Gaps = 5/88 (5%)

Query: 12  PLRHGATCWSLSASAMLSQRRRPRALPTAPPVVSV-----TETQPPRSGHCHPPQTPAAG 66
           P R       LS S    +R+ P   P   P VS      +     R+    PP + AA 
Sbjct: 633 PARARGEIGGLSLSPSPERRKPPPPDPATKPKVSWIHGKHSAAAAGRAPSPPPPGSEAAP 692

Query: 67  SRSPRSGRPSTRSATQLSQGRPQSDGPT 94
           S S R   PS +SA  +  G P++  PT
Sbjct: 693 SPSKRKRTPSDKSAHTVEHGSPRTRDPT 720


>gi|58331253 obscurin, cytoskeletal calmodulin and titin-interacting
            RhoGEF isoform a [Homo sapiens]
          Length = 6620

 Score = 33.1 bits (74), Expect = 0.049
 Identities = 32/101 (31%), Positives = 37/101 (36%), Gaps = 12/101 (11%)

Query: 3    SASRSPMRY---PLRHGATCWSLSASAMLSQRRRPRALPTAPPVVS---VTETQPPRSGH 56
            S SRSP R    PLR G     L       Q RRP A P   PVV    VTE +      
Sbjct: 6256 SPSRSPSRCSASPLRPGLLAPDLLYLPGAGQPRRPEAEPGQKPVVPTLYVTEAE------ 6309

Query: 57   CHPPQTPAAGSRSPRSGRPSTRSATQLSQGRPQSDGPTWSV 97
             H P  P      P+          ++ +  PQ   PT  V
Sbjct: 6310 AHSPALPGLSGPQPKWVEVEETIEVRVKKMGPQGVSPTTEV 6350


>gi|169208488 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 150

 Score = 33.1 bits (74), Expect = 0.049
 Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 8/70 (11%)

Query: 24 ASAMLSQRRRPRALPTAP---PVVSVTETQPP----RSGHCHPPQTPAAGSRSPRSG-RP 75
          A + L  +R  R +P AP   P     ET+PP    ++ H    QT   G+RSPR G R 
Sbjct: 10 AGSHLRAQRLGREVPAAPKPAPRQGARETRPPPPPTQASHSGAGQTREKGARSPRLGNRG 69

Query: 76 STRSATQLSQ 85
           +R+ + LS+
Sbjct: 70 LSRAGSPLSR 79


>gi|148886752 immunoglobulin superfamily, member 9B [Homo sapiens]
          Length = 1349

 Score = 33.1 bits (74), Expect = 0.049
 Identities = 27/73 (36%), Positives = 34/73 (46%), Gaps = 5/73 (6%)

Query: 21   SLSASAMLSQRRRPRALPTAPPVVSVTETQPPRSGHCHPPQTPAAGS--RSPRSGRPSTR 78
            S + S  L+ R RPR        +S    QPP +       TP+ GS  +S RSG PS R
Sbjct: 1211 SRTGSPELAARARPRPGLLQQAEMSEITLQPPAAVSFSRKSTPSTGSPSQSSRSGSPSYR 1270

Query: 79   SA---TQLSQGRP 88
             A   T L+ G P
Sbjct: 1271 PAMGFTTLATGYP 1283


>gi|239754709 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 112

 Score = 32.7 bits (73), Expect = 0.064
 Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 5/64 (7%)

Query: 20 WSLSASAMLSQRRR----PRALPTAPPVVSVTETQPPRSGHCHPPQTPAAGSRSPRSGRP 75
          W  +   +L+QRR+    PR  P  P   S+T  Q P  GH   P      +R P  G P
Sbjct: 21 WRAAVERVLAQRRQLGSGPRWAPAGPGPPSLT-VQDPGRGHSSSPDALLPDARCPCPGVP 79

Query: 76 STRS 79
          S  S
Sbjct: 80 SPGS 83


>gi|239749260 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 112

 Score = 32.7 bits (73), Expect = 0.064
 Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 5/64 (7%)

Query: 20 WSLSASAMLSQRRR----PRALPTAPPVVSVTETQPPRSGHCHPPQTPAAGSRSPRSGRP 75
          W  +   +L+QRR+    PR  P  P   S+T  Q P  GH   P      +R P  G P
Sbjct: 21 WRAAVERVLAQRRQLGSGPRWAPAGPGPPSLT-VQDPGRGHSSSPDALLPDARCPCPGVP 79

Query: 76 STRS 79
          S  S
Sbjct: 80 SPGS 83


>gi|239743356 PREDICTED: hypothetical protein XP_002342826 [Homo
          sapiens]
          Length = 112

 Score = 32.7 bits (73), Expect = 0.064
 Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 5/64 (7%)

Query: 20 WSLSASAMLSQRRR----PRALPTAPPVVSVTETQPPRSGHCHPPQTPAAGSRSPRSGRP 75
          W  +   +L+QRR+    PR  P  P   S+T  Q P  GH   P      +R P  G P
Sbjct: 21 WRAAVERVLAQRRQLGSGPRWAPAGPGPPSLT-VQDPGRGHSSSPDALLPDARCPCPGVP 79

Query: 76 STRS 79
          S  S
Sbjct: 80 SPGS 83


>gi|239509045 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 112

 Score = 32.7 bits (73), Expect = 0.064
 Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 5/64 (7%)

Query: 20 WSLSASAMLSQRRR----PRALPTAPPVVSVTETQPPRSGHCHPPQTPAAGSRSPRSGRP 75
          W  +   +L+QRR+    PR  P  P   S+T  Q P  GH   P      +R P  G P
Sbjct: 21 WRAAVERVLAQRRQLGSGPRWAPAGPGPPSLT-VQDPGRGHSSSPDALLPDARCPCPGVP 79

Query: 76 STRS 79
          S  S
Sbjct: 80 SPGS 83


>gi|4826964 UV excision repair protein RAD23 homolog A [Homo
           sapiens]
          Length = 363

 Score = 32.7 bits (73), Expect = 0.064
 Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 34  PRALPTAPPVVSVTETQPPRSGHCHPPQTPAAGSRSPRSGRPSTRSATQLSQGRPQS 90
           P A PTA P  S +    P SG  HPP   A   +SP      T S   +S   P S
Sbjct: 89  PEASPTAAPESSTSFPPAPTSGMSHPPPA-AREDKSPSEESAPTTSPESVSGSVPSS 144


>gi|21359935 Down syndrome cell adhesion molecule like 1 [Homo
            sapiens]
          Length = 2113

 Score = 32.3 bits (72), Expect = 0.083
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 6/59 (10%)

Query: 23   SASAMLSQRRRPRALP---TAPPVVSVTETQPPRSGHCHPPQTPAAGSRSPRSGRPSTR 78
            +++A L QR      P   TAPP    T  +PP +    P   PA  +  PR+G P T+
Sbjct: 2024 ASTATLPQRTLAMPAPPAGTAPPAPGPTPAEPPTAPSAAP---PAPSTEPPRAGGPHTK 2079



 Score = 28.5 bits (62), Expect = 1.2
 Identities = 14/35 (40%), Positives = 18/35 (51%)

Query: 59 PPQTPAAGSRSPRSGRPSTRSATQLSQGRPQSDGP 93
          PP  P+AG RS  SG PS     +  +GR  +  P
Sbjct: 12 PPPQPSAGLRSRESGAPSAGGWERAERGRGAAARP 46


>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
          Length = 416

 Score = 32.3 bits (72), Expect = 0.083
 Identities = 20/53 (37%), Positives = 22/53 (41%), Gaps = 8/53 (15%)

Query: 32  RRPRALPTAPPVVSVTETQ---PPRSGHCHPPQTPAAGS-----RSPRSGRPS 76
           R P   P  PP       Q   PP  G+   PQ P AG      R P+ GRPS
Sbjct: 360 RSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGPPRPPQGGRPS 412



 Score = 26.6 bits (57), Expect = 4.6
 Identities = 21/61 (34%), Positives = 23/61 (37%), Gaps = 3/61 (4%)

Query: 34  PRALPTAPPVVSVTETQ-PPRSGHCHPPQTPAAGSRSPRSGRPSTRSATQLSQGRPQSDG 92
           P   P  PP     + Q PP  G    P      SRSPRS  P  +      QG  Q  G
Sbjct: 74  PPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRS--PPGKPQGPPPQGGNQPQG 131

Query: 93  P 93
           P
Sbjct: 132 P 132


>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
           preproprotein [Homo sapiens]
          Length = 331

 Score = 32.3 bits (72), Expect = 0.083
 Identities = 20/53 (37%), Positives = 22/53 (41%), Gaps = 8/53 (15%)

Query: 32  RRPRALPTAPPVVSVTETQ---PPRSGHCHPPQTPAAGS-----RSPRSGRPS 76
           R P   P  PP       Q   PP  G+   PQ P AG      R P+ GRPS
Sbjct: 275 RSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGPPRPPQGGRPS 327



 Score = 26.6 bits (57), Expect = 4.6
 Identities = 21/61 (34%), Positives = 23/61 (37%), Gaps = 3/61 (4%)

Query: 34  PRALPTAPPVVSVTETQ-PPRSGHCHPPQTPAAGSRSPRSGRPSTRSATQLSQGRPQSDG 92
           P   P  PP     + Q PP  G    P      SRSPRS  P  +      QG  Q  G
Sbjct: 53  PPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRS--PPGKPQGPPPQGGNQPQG 110

Query: 93  P 93
           P
Sbjct: 111 P 111



 Score = 26.2 bits (56), Expect = 6.0
 Identities = 21/61 (34%), Positives = 22/61 (36%), Gaps = 3/61 (4%)

Query: 34  PRALPTAPPVVSVTETQ-PPRSGHCHPPQTPAAGSRSPRSGRPSTRSATQLSQGRPQSDG 92
           P   P  PP       Q PP  G    P      SRSPRS  P  +      QG  Q  G
Sbjct: 114 PPGKPQGPPPQGGNRPQGPPPPGKPQGPPPQGDKSRSPRS--PPGKPQGPPPQGGNQPQG 171

Query: 93  P 93
           P
Sbjct: 172 P 172


>gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3
           preproprotein [Homo sapiens]
          Length = 178

 Score = 32.3 bits (72), Expect = 0.083
 Identities = 20/53 (37%), Positives = 22/53 (41%), Gaps = 8/53 (15%)

Query: 32  RRPRALPTAPPVVSVTETQ---PPRSGHCHPPQTPAAGS-----RSPRSGRPS 76
           R P   P  PP       Q   PP  G+   PQ P AG      R P+ GRPS
Sbjct: 122 RSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGPPRPPQGGRPS 174



 Score = 26.9 bits (58), Expect = 3.5
 Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 14/69 (20%)

Query: 38  PTAPPVVSVTETQPPRSGHCHPPQTPAAGSRS--PRSGRP------------STRSATQL 83
           P  PP     +  PP+      P++P    +   P+ G+P            S RS    
Sbjct: 68  PQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGKPQGPPAQGGSKSQSARSPPGK 127

Query: 84  SQGRPQSDG 92
            QG PQ +G
Sbjct: 128 PQGPPQQEG 136


>gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2
           preproprotein [Homo sapiens]
          Length = 198

 Score = 32.3 bits (72), Expect = 0.083
 Identities = 20/53 (37%), Positives = 22/53 (41%), Gaps = 8/53 (15%)

Query: 32  RRPRALPTAPPVVSVTETQ---PPRSGHCHPPQTPAAGS-----RSPRSGRPS 76
           R P   P  PP       Q   PP  G+   PQ P AG      R P+ GRPS
Sbjct: 142 RSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGPPRPPQGGRPS 194



 Score = 26.9 bits (58), Expect = 3.5
 Identities = 21/66 (31%), Positives = 22/66 (33%), Gaps = 5/66 (7%)

Query: 32  RRPRALPTAPPVVSVTETQPPRSGHCHP--PQTPAAGSRSPRSG---RPSTRSATQLSQG 86
           R P   P  PP        PP  G   P  P  P      P  G     S RS     QG
Sbjct: 91  RSPPGKPQGPPPQGGKPQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARSPPGKPQG 150

Query: 87  RPQSDG 92
            PQ +G
Sbjct: 151 PPQQEG 156


>gi|24431933 reticulon 4 isoform B [Homo sapiens]
          Length = 373

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 25/77 (32%), Positives = 30/77 (38%), Gaps = 10/77 (12%)

Query: 2   PSASRSPMRYPLRHGATCWSLSASAMLSQRRRPRALPTAPPVVSVTETQ-----PPRSGH 56
           P +S  P   PL   A      + + L +   P A P  PP  SV+        PP    
Sbjct: 112 PVSSTVPAPSPLSAAAV-----SPSKLPEDDEPPARPPPPPPASVSPQAEPVWTPPAPAP 166

Query: 57  CHPPQTPAAGSRSPRSG 73
             PP TPAA  R   SG
Sbjct: 167 AAPPSTPAAPKRRGSSG 183


>gi|47519490 reticulon 4 isoform D [Homo sapiens]
          Length = 392

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 25/77 (32%), Positives = 30/77 (38%), Gaps = 10/77 (12%)

Query: 2   PSASRSPMRYPLRHGATCWSLSASAMLSQRRRPRALPTAPPVVSVTETQ-----PPRSGH 56
           P +S  P   PL   A      + + L +   P A P  PP  SV+        PP    
Sbjct: 112 PVSSTVPAPSPLSAAAV-----SPSKLPEDDEPPARPPPPPPASVSPQAEPVWTPPAPAP 166

Query: 57  CHPPQTPAAGSRSPRSG 73
             PP TPAA  R   SG
Sbjct: 167 AAPPSTPAAPKRRGSSG 183


>gi|24431935 reticulon 4 isoform A [Homo sapiens]
          Length = 1192

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 25/77 (32%), Positives = 30/77 (38%), Gaps = 10/77 (12%)

Query: 2   PSASRSPMRYPLRHGATCWSLSASAMLSQRRRPRALPTAPPVVSVTETQ-----PPRSGH 56
           P +S  P   PL   A      + + L +   P A P  PP  SV+        PP    
Sbjct: 112 PVSSTVPAPSPLSAAAV-----SPSKLPEDDEPPARPPPPPPASVSPQAEPVWTPPAPAP 166

Query: 57  CHPPQTPAAGSRSPRSG 73
             PP TPAA  R   SG
Sbjct: 167 AAPPSTPAAPKRRGSSG 183


>gi|119943102 CREB binding protein isoform b [Homo sapiens]
          Length = 2404

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 3/75 (4%)

Query: 21  SLSASAMLSQRRRPRALPTAPPVVSVTET--QPPRSGHCHPPQTPAAGSRSPRSGRPSTR 78
           ++ A+A      +P+  P  PP V+  ++  Q P   H  PP TP + + +    R  T 
Sbjct: 879 TVQAAAQAQVTPQPQT-PVQPPSVATPQSSQQQPTPVHAQPPGTPLSQAAASIDNRVPTP 937

Query: 79  SATQLSQGRPQSDGP 93
           S+   ++   Q  GP
Sbjct: 938 SSVASAETNSQQPGP 952


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.312    0.124    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,037,166
Number of Sequences: 37866
Number of extensions: 273655
Number of successful extensions: 2532
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 279
Number of HSP's that attempted gapping in prelim test: 2033
Number of HSP's gapped (non-prelim): 734
length of query: 97
length of database: 18,247,518
effective HSP length: 68
effective length of query: 29
effective length of database: 15,672,630
effective search space: 454506270
effective search space used: 454506270
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.