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Search of human proteins with 239752744
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239752744 PREDICTED: hypothetical protein [Homo sapiens]
(361 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752744 PREDICTED: hypothetical protein [Homo sapiens] 733 0.0
gi|171906567 peripheral benzodiazepine receptor-associated prote... 41 0.002
gi|171906559 peripheral benzodiazepine receptor-associated prote... 41 0.002
gi|24497501 forkhead box A1 [Homo sapiens] 40 0.002
gi|239753407 PREDICTED: hypothetical protein [Homo sapiens] 39 0.007
gi|209977067 OTU domain containing 5 isoform c [Homo sapiens] 39 0.007
gi|33457350 OTU domain containing 5 isoform a [Homo sapiens] 39 0.007
gi|209977021 OTU domain containing 5 isoform b [Homo sapiens] 39 0.007
gi|209977019 OTU domain containing 5 isoform b [Homo sapiens] 39 0.007
gi|23503317 coiled-coil domain containing 96 [Homo sapiens] 39 0.007
gi|239753721 PREDICTED: hypothetical protein [Homo sapiens] 39 0.009
gi|239748254 PREDICTED: hypothetical protein XP_002346600 [Homo ... 39 0.009
gi|239742155 PREDICTED: hypothetical protein XP_002342442 [Homo ... 39 0.009
gi|169206080 PREDICTED: hypothetical protein LOC100132234 [Homo ... 38 0.012
gi|169206459 PREDICTED: hypothetical protein LOC100132234 [Homo ... 38 0.012
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 38 0.012
gi|169205915 PREDICTED: hypothetical protein LOC100132234 [Homo ... 38 0.016
gi|19923352 NK3 homeobox 1 [Homo sapiens] 37 0.021
gi|239751791 PREDICTED: hypothetical protein [Homo sapiens] 37 0.021
gi|239746282 PREDICTED: hypothetical protein XP_002343723 [Homo ... 37 0.021
gi|239746104 PREDICTED: hypothetical protein XP_002344198 [Homo ... 37 0.021
gi|150170729 microtubule associated serine/threonine kinase 3 [H... 37 0.021
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 37 0.027
gi|92859678 small nuclear RNA activating complex, polypeptide 4,... 37 0.027
gi|71274172 ankyrin repeat domain 56 [Homo sapiens] 37 0.027
gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [... 37 0.036
gi|145309302 cell division cycle 2-like 5 isoform 1 [Homo sapiens] 37 0.036
gi|145309300 cell division cycle 2-like 5 isoform 2 [Homo sapiens] 37 0.036
gi|239756566 PREDICTED: hypothetical protein [Homo sapiens] 36 0.047
gi|239750574 PREDICTED: hypothetical protein [Homo sapiens] 36 0.047
>gi|239752744 PREDICTED: hypothetical protein [Homo sapiens]
Length = 361
Score = 733 bits (1893), Expect = 0.0
Identities = 361/361 (100%), Positives = 361/361 (100%)
Query: 1 MSSAKLETPAPRGAWDTQRYRSCSARLTAASGKVARKRRWLMCRTPAAGTSAPLCRCREE 60
MSSAKLETPAPRGAWDTQRYRSCSARLTAASGKVARKRRWLMCRTPAAGTSAPLCRCREE
Sbjct: 1 MSSAKLETPAPRGAWDTQRYRSCSARLTAASGKVARKRRWLMCRTPAAGTSAPLCRCREE 60
Query: 61 SEGPRSPLPLTCKRKRSASAALPAAMHWNDAFWPALTSTSPRREKCGAFAAGLELHRELG 120
SEGPRSPLPLTCKRKRSASAALPAAMHWNDAFWPALTSTSPRREKCGAFAAGLELHRELG
Sbjct: 61 SEGPRSPLPLTCKRKRSASAALPAAMHWNDAFWPALTSTSPRREKCGAFAAGLELHRELG 120
Query: 121 LHPLQAGAAAAHTPYPCAPKSADSQLSLVPLTAVGSSHIPHSTAQGAPINAHVDAQGARA 180
LHPLQAGAAAAHTPYPCAPKSADSQLSLVPLTAVGSSHIPHSTAQGAPINAHVDAQGARA
Sbjct: 121 LHPLQAGAAAAHTPYPCAPKSADSQLSLVPLTAVGSSHIPHSTAQGAPINAHVDAQGARA 180
Query: 181 VPVPAVQEVAELHTVGIILAQALEDDMGSLAWGMLGSVDHQGGFALAPTGSHRTGPGCTR 240
VPVPAVQEVAELHTVGIILAQALEDDMGSLAWGMLGSVDHQGGFALAPTGSHRTGPGCTR
Sbjct: 181 VPVPAVQEVAELHTVGIILAQALEDDMGSLAWGMLGSVDHQGGFALAPTGSHRTGPGCTR 240
Query: 241 RALLGHLPPRRCSQLRSLGLRRAELEGECQHERLGTGHGWSVAARPGARRGGRRPRSPSP 300
RALLGHLPPRRCSQLRSLGLRRAELEGECQHERLGTGHGWSVAARPGARRGGRRPRSPSP
Sbjct: 241 RALLGHLPPRRCSQLRSLGLRRAELEGECQHERLGTGHGWSVAARPGARRGGRRPRSPSP 300
Query: 301 ARGEPEPEPERSGAARSGTGAESRAGAGASGALTSGPAAGSAVSRRSLLATAGAAAGPAA 360
ARGEPEPEPERSGAARSGTGAESRAGAGASGALTSGPAAGSAVSRRSLLATAGAAAGPAA
Sbjct: 301 ARGEPEPEPERSGAARSGTGAESRAGAGASGALTSGPAAGSAVSRRSLLATAGAAAGPAA 360
Query: 361 R 361
R
Sbjct: 361 R 361
>gi|171906567 peripheral benzodiazepine receptor-associated protein 1
isoform b [Homo sapiens]
Length = 1797
Score = 40.8 bits (94), Expect = 0.002
Identities = 49/161 (30%), Positives = 61/161 (37%), Gaps = 26/161 (16%)
Query: 208 GSLAWGMLGSVDHQGGFALAPTGSHRTGPGCTRRALLGHLPPRRCSQLRSL--GLRRA-- 263
G A G LG +GG + RTG + R LG P RRCS+ R+L GL
Sbjct: 1376 GPQASGRLGPTRERGGLPVIE--GPRTGLEASGRGRLG--PSRRCSRGRALEPGLASCLS 1431
Query: 264 --------ELEGECQHERLGTGHGWSVAARPGARRGGR-----RPRSPSPARGEPEPEP- 309
E + E + E G + + PG RPR P A P+P P
Sbjct: 1432 PKCLEISIEYDSEDEQEAGSGGISITSSCYPGDGEAWGTATVGRPRGPPKANSGPKPYPR 1491
Query: 310 ----ERSGAARSGTGAESRAGAGASGALTSGPAAGSAVSRR 346
E+ R G A RA S A +G A G S R
Sbjct: 1492 LPAWEKGEPERRGRSATGRAKEPLSRATETGEARGQDGSGR 1532
Score = 32.0 bits (71), Expect = 0.88
Identities = 27/71 (38%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Query: 292 GRRPRSPSP--ARGEPEPEP-----ERSGAARSGTGAESRAGAGASGALTSGPAAGSAVS 344
G P SPS A+G E P E +GAA GT E A G GPAA S ++
Sbjct: 1069 GAPPASPSREMAKGSHEDPPAPCSQEEAGAAVLGTSEERTASTSTLGEKDPGPAAPS-LA 1127
Query: 345 RRSLLATAGAA 355
++ TAG A
Sbjct: 1128 KQEAEWTAGEA 1138
Score = 29.3 bits (64), Expect = 5.7
Identities = 48/190 (25%), Positives = 66/190 (34%), Gaps = 31/190 (16%)
Query: 177 GARAVPVPAVQEVAELHTVGIILAQALEDDMGSLAWGMLGSVDHQGGFALAPTGSHRTGP 236
GA++ P P + ++ IL Q LE + L S+ + ++G
Sbjct: 1235 GAKSQPDPFCETDSDEE----ILEQILELPLQQFCSKKLFSIPEEEEEEEEDEEEEKSGA 1290
Query: 237 GCTRR-------ALLG----HLPPRRCSQLRSLGLRRAELEGECQHERLGTGHGWSVAAR 285
GC+ R ALLG PRR Q + G+C + G G S
Sbjct: 1291 GCSSRDPGPPEPALLGLGCDSGQPRRPGQCPLSP--ESSRAGDCLEDMPGLVGGSS---- 1344
Query: 286 PGARRGGRRPRSPSPARGEPEPEP------ERSGAARSGTGAESRAGAGASGALTSGPAA 339
RRGG P P R P+P +G SG +R G + GP
Sbjct: 1345 --RRRGGGSPEKPPSRRRPPDPREHCSRLLSNNGPQASGRLGPTRERGGL--PVIEGPRT 1400
Query: 340 GSAVSRRSLL 349
G S R L
Sbjct: 1401 GLEASGRGRL 1410
>gi|171906559 peripheral benzodiazepine receptor-associated protein 1
isoform a [Homo sapiens]
Length = 1857
Score = 40.8 bits (94), Expect = 0.002
Identities = 49/161 (30%), Positives = 61/161 (37%), Gaps = 26/161 (16%)
Query: 208 GSLAWGMLGSVDHQGGFALAPTGSHRTGPGCTRRALLGHLPPRRCSQLRSL--GLRRA-- 263
G A G LG +GG + RTG + R LG P RRCS+ R+L GL
Sbjct: 1436 GPQASGRLGPTRERGGLPVIE--GPRTGLEASGRGRLG--PSRRCSRGRALEPGLASCLS 1491
Query: 264 --------ELEGECQHERLGTGHGWSVAARPGARRGGR-----RPRSPSPARGEPEPEP- 309
E + E + E G + + PG RPR P A P+P P
Sbjct: 1492 PKCLEISIEYDSEDEQEAGSGGISITSSCYPGDGEAWGTATVGRPRGPPKANSGPKPYPR 1551
Query: 310 ----ERSGAARSGTGAESRAGAGASGALTSGPAAGSAVSRR 346
E+ R G A RA S A +G A G S R
Sbjct: 1552 LPAWEKGEPERRGRSATGRAKEPLSRATETGEARGQDGSGR 1592
Score = 32.0 bits (71), Expect = 0.88
Identities = 27/71 (38%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Query: 292 GRRPRSPSP--ARGEPEPEP-----ERSGAARSGTGAESRAGAGASGALTSGPAAGSAVS 344
G P SPS A+G E P E +GAA GT E A G GPAA S ++
Sbjct: 1129 GAPPASPSREMAKGSHEDPPAPCSQEEAGAAVLGTSEERTASTSTLGEKDPGPAAPS-LA 1187
Query: 345 RRSLLATAGAA 355
++ TAG A
Sbjct: 1188 KQEAEWTAGEA 1198
Score = 29.3 bits (64), Expect = 5.7
Identities = 48/190 (25%), Positives = 66/190 (34%), Gaps = 31/190 (16%)
Query: 177 GARAVPVPAVQEVAELHTVGIILAQALEDDMGSLAWGMLGSVDHQGGFALAPTGSHRTGP 236
GA++ P P + ++ IL Q LE + L S+ + ++G
Sbjct: 1295 GAKSQPDPFCETDSDEE----ILEQILELPLQQFCSKKLFSIPEEEEEEEEDEEEEKSGA 1350
Query: 237 GCTRR-------ALLG----HLPPRRCSQLRSLGLRRAELEGECQHERLGTGHGWSVAAR 285
GC+ R ALLG PRR Q + G+C + G G S
Sbjct: 1351 GCSSRDPGPPEPALLGLGCDSGQPRRPGQCPLSP--ESSRAGDCLEDMPGLVGGSS---- 1404
Query: 286 PGARRGGRRPRSPSPARGEPEPEP------ERSGAARSGTGAESRAGAGASGALTSGPAA 339
RRGG P P R P+P +G SG +R G + GP
Sbjct: 1405 --RRRGGGSPEKPPSRRRPPDPREHCSRLLSNNGPQASGRLGPTRERGGL--PVIEGPRT 1460
Query: 340 GSAVSRRSLL 349
G S R L
Sbjct: 1461 GLEASGRGRL 1470
>gi|24497501 forkhead box A1 [Homo sapiens]
Length = 472
Score = 40.4 bits (93), Expect = 0.002
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 285 RPGARRGGRRPRSPSPARGEPEPEPERSGAARSGTGAESRAGA-GASGALTSGPAAGSAV 343
+PGA GG S A+G PE + SGA+ + G G +G L PA G A
Sbjct: 271 QPGAGGGGGSGSGGSGAKGGPESRKDPSGASNPSADSPLHRGVHGKTGQLEGAPAPGPAA 330
Query: 344 SRRSLLATAGAAAGPAA 360
S ++L + A G A+
Sbjct: 331 SPQTLDHSGATATGGAS 347
>gi|239753407 PREDICTED: hypothetical protein [Homo sapiens]
Length = 182
Score = 38.9 bits (89), Expect = 0.007
Identities = 33/89 (37%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 276 TGHGWSVAARPGARRGGRRPRSPSPARGEPEPEPERSGAARSGT-GAESRAGAGASGALT 334
TG G A R G + G R S AR P P S ++ SG+ G+ G+G++G T
Sbjct: 16 TGGGPQAARRSGVQGGQRNSTS---ARAPPPPPLAPSSSSSSGSSGSSGGGGSGSAGQPT 72
Query: 335 SGP--AAGSAVSRRSLLATAGAAAGPAAR 361
G A GSA +RR+ G A G A R
Sbjct: 73 LGSMLAVGSA-ARRASERAGGRAGGTALR 100
>gi|209977067 OTU domain containing 5 isoform c [Homo sapiens]
Length = 349
Score = 38.9 bits (89), Expect = 0.007
Identities = 29/87 (33%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Query: 63 GPRSPLPLTCKRKRSASAALPAAMHWNDAFWPALTSTSPRREKCGAFAAGLELHRELGLH 122
GP P + + +AA W TS SPR+ + ELH ELG+
Sbjct: 201 GPSQPRKASATCSSATAAASSGLEEW--------TSRSPRQRSSASSPEHPELHAELGMK 252
Query: 123 PLQAGA--AAAHTPYPCAPKSADSQLS 147
P G A A P PCAP SQ S
Sbjct: 253 PPSPGTVLALAKPPSPCAP-GTSSQFS 278
>gi|33457350 OTU domain containing 5 isoform a [Homo sapiens]
Length = 571
Score = 38.9 bits (89), Expect = 0.007
Identities = 29/87 (33%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Query: 63 GPRSPLPLTCKRKRSASAALPAAMHWNDAFWPALTSTSPRREKCGAFAAGLELHRELGLH 122
GP P + + +AA W TS SPR+ + ELH ELG+
Sbjct: 423 GPSQPRKASATCSSATAAASSGLEEW--------TSRSPRQRSSASSPEHPELHAELGMK 474
Query: 123 PLQAGA--AAAHTPYPCAPKSADSQLS 147
P G A A P PCAP SQ S
Sbjct: 475 PPSPGTVLALAKPPSPCAP-GTSSQFS 500
Score = 34.7 bits (78), Expect = 0.14
Identities = 30/88 (34%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query: 275 GTGHGWSVAARPGARRGGR-RPRSPSPARGEPEP---EPERSGAARSGTGAESRAGAGAS 330
G H W++A PGA G R + SP P G P + GAA +G GA + G
Sbjct: 76 GALHRWALAVPPGAVAGPRPQQASPPPCGGPGGPGGGPGDALGAAAAGVGA-AGVVVGVG 134
Query: 331 GAL-TSGPAAGSAVSRRSLLATAGAAAG 357
GA+ G +G S+R A A G
Sbjct: 135 GAVGVGGCCSGPGHSKRRRQAPGVGAVG 162
>gi|209977021 OTU domain containing 5 isoform b [Homo sapiens]
Length = 566
Score = 38.9 bits (89), Expect = 0.007
Identities = 29/87 (33%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Query: 63 GPRSPLPLTCKRKRSASAALPAAMHWNDAFWPALTSTSPRREKCGAFAAGLELHRELGLH 122
GP P + + +AA W TS SPR+ + ELH ELG+
Sbjct: 418 GPSQPRKASATCSSATAAASSGLEEW--------TSRSPRQRSSASSPEHPELHAELGMK 469
Query: 123 PLQAGA--AAAHTPYPCAPKSADSQLS 147
P G A A P PCAP SQ S
Sbjct: 470 PPSPGTVLALAKPPSPCAP-GTSSQFS 495
Score = 34.7 bits (78), Expect = 0.14
Identities = 30/88 (34%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query: 275 GTGHGWSVAARPGARRGGR-RPRSPSPARGEPEP---EPERSGAARSGTGAESRAGAGAS 330
G H W++A PGA G R + SP P G P + GAA +G GA + G
Sbjct: 76 GALHRWALAVPPGAVAGPRPQQASPPPCGGPGGPGGGPGDALGAAAAGVGA-AGVVVGVG 134
Query: 331 GAL-TSGPAAGSAVSRRSLLATAGAAAG 357
GA+ G +G S+R A A G
Sbjct: 135 GAVGVGGCCSGPGHSKRRRQAPGVGAVG 162
>gi|209977019 OTU domain containing 5 isoform b [Homo sapiens]
Length = 566
Score = 38.9 bits (89), Expect = 0.007
Identities = 29/87 (33%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Query: 63 GPRSPLPLTCKRKRSASAALPAAMHWNDAFWPALTSTSPRREKCGAFAAGLELHRELGLH 122
GP P + + +AA W TS SPR+ + ELH ELG+
Sbjct: 418 GPSQPRKASATCSSATAAASSGLEEW--------TSRSPRQRSSASSPEHPELHAELGMK 469
Query: 123 PLQAGA--AAAHTPYPCAPKSADSQLS 147
P G A A P PCAP SQ S
Sbjct: 470 PPSPGTVLALAKPPSPCAP-GTSSQFS 495
Score = 34.7 bits (78), Expect = 0.14
Identities = 30/88 (34%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query: 275 GTGHGWSVAARPGARRGGR-RPRSPSPARGEPEP---EPERSGAARSGTGAESRAGAGAS 330
G H W++A PGA G R + SP P G P + GAA +G GA + G
Sbjct: 76 GALHRWALAVPPGAVAGPRPQQASPPPCGGPGGPGGGPGDALGAAAAGVGA-AGVVVGVG 134
Query: 331 GAL-TSGPAAGSAVSRRSLLATAGAAAG 357
GA+ G +G S+R A A G
Sbjct: 135 GAVGVGGCCSGPGHSKRRRQAPGVGAVG 162
>gi|23503317 coiled-coil domain containing 96 [Homo sapiens]
Length = 555
Score = 38.9 bits (89), Expect = 0.007
Identities = 26/65 (40%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 277 GHGWSVAARPGA-RRGGRRPRSPSPARGEPEPEPERSGAARSGTGAESRAGAGASGALTS 335
G G S+AARP + P SP P E EPE E A S G + A A LT+
Sbjct: 16 GDGESLAARPSKIKASSGPPTSPEPGELESEPEEEEEEQAASQGGTAADEQAEAPKGLTA 75
Query: 336 GPAAG 340
AAG
Sbjct: 76 AEAAG 80
>gi|239753721 PREDICTED: hypothetical protein [Homo sapiens]
Length = 342
Score = 38.5 bits (88), Expect = 0.009
Identities = 43/142 (30%), Positives = 50/142 (35%), Gaps = 12/142 (8%)
Query: 224 FALAPTGSHRTGPGCTRRALLGHLPPRRCSQLRSLGLRR----AELEGECQHERLGTGHG 279
+A P T GC R R S LR+ R G R G G
Sbjct: 81 WAPGPLREQGTRRGCRRSLEQPRERARGQSSLRAAAHHRHNPGRRRGGGSPAAREGDAAG 140
Query: 280 WSVAARPGAR-RGGRRPRSPSPARGEPEPEPERSGAARSGTGAESRAGAGASGALTSGPA 338
W +A G R RGGR SP+P G P AA G E + A L P
Sbjct: 141 WLLAPGLGPRLRGGRGGWSPAPKAGSPM-------AAAPGRTCEGKRTAPRRMLLPDSPY 193
Query: 339 AGSAVSRRSLLATAGAAAGPAA 360
AG R+ L A A+ P A
Sbjct: 194 AGRPQRARTSLCAAPASRRPPA 215
>gi|239748254 PREDICTED: hypothetical protein XP_002346600 [Homo
sapiens]
Length = 342
Score = 38.5 bits (88), Expect = 0.009
Identities = 43/142 (30%), Positives = 50/142 (35%), Gaps = 12/142 (8%)
Query: 224 FALAPTGSHRTGPGCTRRALLGHLPPRRCSQLRSLGLRR----AELEGECQHERLGTGHG 279
+A P T GC R R S LR+ R G R G G
Sbjct: 81 WAPGPLREQGTRRGCRRSLEQPRERARGQSSLRAAAHHRHNPGRRRGGGSPAAREGDAAG 140
Query: 280 WSVAARPGAR-RGGRRPRSPSPARGEPEPEPERSGAARSGTGAESRAGAGASGALTSGPA 338
W +A G R RGGR SP+P G P AA G E + A L P
Sbjct: 141 WLLAPGLGPRLRGGRGGWSPAPKAGSPM-------AAAPGRTCEGKRTAPRRMLLPDSPY 193
Query: 339 AGSAVSRRSLLATAGAAAGPAA 360
AG R+ L A A+ P A
Sbjct: 194 AGRPQRARTSLCAAPASRRPPA 215
>gi|239742155 PREDICTED: hypothetical protein XP_002342442 [Homo
sapiens]
Length = 342
Score = 38.5 bits (88), Expect = 0.009
Identities = 43/142 (30%), Positives = 50/142 (35%), Gaps = 12/142 (8%)
Query: 224 FALAPTGSHRTGPGCTRRALLGHLPPRRCSQLRSLGLRR----AELEGECQHERLGTGHG 279
+A P T GC R R S LR+ R G R G G
Sbjct: 81 WAPGPLREQGTRRGCRRSLEQPRERARGQSSLRAAAHHRHNPGRRRGGGSPAAREGDAAG 140
Query: 280 WSVAARPGAR-RGGRRPRSPSPARGEPEPEPERSGAARSGTGAESRAGAGASGALTSGPA 338
W +A G R RGGR SP+P G P AA G E + A L P
Sbjct: 141 WLLAPGLGPRLRGGRGGWSPAPKAGSPM-------AAAPGRTCEGKRTAPRRMLLPDSPY 193
Query: 339 AGSAVSRRSLLATAGAAAGPAA 360
AG R+ L A A+ P A
Sbjct: 194 AGRPQRARTSLCAAPASRRPPA 215
>gi|169206080 PREDICTED: hypothetical protein LOC100132234 [Homo
sapiens]
Length = 202
Score = 38.1 bits (87), Expect = 0.012
Identities = 53/180 (29%), Positives = 67/180 (37%), Gaps = 31/180 (17%)
Query: 209 SLAWGMLGSV----DHQGGFALAP-TGSHRTGPGCTRRALLGHLPPRRCSQLRSLG---- 259
SLA G GSV + GF P +G R PG R L+ RR +S
Sbjct: 18 SLARGKSGSVFVGDGTEPGFGAQPGSGGDRVCPGGRPRLLMA--VKRRSGGFKSHSATER 75
Query: 260 LRRAELEGECQHERLGTGHGWSVAARPGARRGGRRPRSPSPARGEPE------------- 306
+ R+ L C RL S A P ARR G+ PR P A G P
Sbjct: 76 VERSRLARACYARRLPPRPTRSPA--PLARRPGKPPRRPKGAAGHPSAPPAAAPAAPAQP 133
Query: 307 --PEPERSGAARSGTGAESRAGAG---ASGALTSGPAAGSAVSRRSLLATAGAAAGPAAR 361
P PE + R + + G G S + PA G A +R++ AAA R
Sbjct: 134 PAPRPESQLSDRPQSWEQKPRGPGRSARSAGAAAPPAGGLAQARQARRRRPRAAAALTGR 193
>gi|169206459 PREDICTED: hypothetical protein LOC100132234 [Homo
sapiens]
Length = 202
Score = 38.1 bits (87), Expect = 0.012
Identities = 53/180 (29%), Positives = 67/180 (37%), Gaps = 31/180 (17%)
Query: 209 SLAWGMLGSV----DHQGGFALAP-TGSHRTGPGCTRRALLGHLPPRRCSQLRSLG---- 259
SLA G GSV + GF P +G R PG R L+ RR +S
Sbjct: 18 SLARGKSGSVFVGDGTEPGFGAQPGSGGDRVCPGGRPRLLMA--VKRRSGGFKSHSATER 75
Query: 260 LRRAELEGECQHERLGTGHGWSVAARPGARRGGRRPRSPSPARGEPE------------- 306
+ R+ L C RL S A P ARR G+ PR P A G P
Sbjct: 76 VERSRLARACYARRLPPRPTRSPA--PLARRPGKPPRRPKGAAGHPSAPPAAAPAAPAQP 133
Query: 307 --PEPERSGAARSGTGAESRAGAG---ASGALTSGPAAGSAVSRRSLLATAGAAAGPAAR 361
P PE + R + + G G S + PA G A +R++ AAA R
Sbjct: 134 PAPRPESQLSDRPQSWEQKPRGPGRSARSAGAAAPPAGGLAQARQARRRRPRAAAALTGR 193
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 38.1 bits (87), Expect = 0.012
Identities = 29/78 (37%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Query: 287 GARRGGRRP---RSPSPARGEPEPEPERSGAARSGTGAESRAGAGASGALTSGPAAGSAV 343
G + G +R RSPSP+ G P+R+G G+G S A G G+ S P S+
Sbjct: 286 GRKTGSQRSSGSRSPSPSGGSGWGSPQRNG----GSGQRSGAHGGRPGSAHSPPDKPSSP 341
Query: 344 SRRSLLATAGAAAGPAAR 361
S R A AA P AR
Sbjct: 342 SPRVRDKAAAAAPTPPAR 359
Score = 34.3 bits (77), Expect = 0.18
Identities = 31/93 (33%), Positives = 41/93 (44%), Gaps = 11/93 (11%)
Query: 249 PRRCSQLRSLGLRRAELEGECQHERLGTGHGWSVAARPGARRGGRRPRSPSPARGEPEPE 308
PR + G R A G + R S A+ P RRG RRPR P+P RG
Sbjct: 366 PRSAPSSQGRGGRAAGGAGRRRRRRRRRRRSRSSASAP-RRRGRRRPR-PAPPRGSSR-- 421
Query: 309 PERSGAARSGTGAESRAGAGASGALTSGPAAGS 341
+R+ + ++S +G GA G GP GS
Sbjct: 422 ----SLSRARSSSDSGSGRGAPG---PGPEPGS 447
Score = 29.3 bits (64), Expect = 5.7
Identities = 31/108 (28%), Positives = 36/108 (33%), Gaps = 39/108 (36%)
Query: 250 RRCSQLRSLGLRRAELEGECQHERLGTGHGWSVAARPGAR------RGGR---------R 294
R+ RS G R G G GW R G GGR +
Sbjct: 287 RKTGSQRSSGSRSPSPSG---------GSGWGSPQRNGGSGQRSGAHGGRPGSAHSPPDK 337
Query: 295 PRSPSP--------------ARGEPEPEPERSGAARSGTGAESRAGAG 328
P SPSP ARG+ P P RS + G G + GAG
Sbjct: 338 PSSPSPRVRDKAAAAAPTPPARGKESPSP-RSAPSSQGRGGRAAGGAG 384
>gi|169205915 PREDICTED: hypothetical protein LOC100132234 [Homo
sapiens]
Length = 202
Score = 37.7 bits (86), Expect = 0.016
Identities = 53/180 (29%), Positives = 67/180 (37%), Gaps = 31/180 (17%)
Query: 209 SLAWGMLGSV----DHQGGFALAP-TGSHRTGPGCTRRALLGHLPPRRCSQLRSLG---- 259
SLA G GSV + GF P +G R PG R L+ RR +S
Sbjct: 18 SLARGKSGSVFVGDGTEPGFGAQPGSGGDRVCPGGRPRLLMA--VKRRSGGFKSHSATER 75
Query: 260 LRRAELEGECQHERLGTGHGWSVAARPGARRGGRRPRSPSPARGEPE------------- 306
+ R+ L C RL S A P ARR G+ PR P A G P
Sbjct: 76 VERSRLARACYARRLPPRPTRSPA--PLARRPGKPPRRPKGAAGHPSAPPAAAPAAPAQP 133
Query: 307 --PEPERSGAARSGTGAESRAGAG---ASGALTSGPAAGSAVSRRSLLATAGAAAGPAAR 361
P PE + R + + G G S + PA G A +R++ AAA R
Sbjct: 134 PAPRPESQLSDRPQSWEQRPRGPGRSARSAGAAAPPAGGLAQARQARRRRPRAAAALTGR 193
>gi|19923352 NK3 homeobox 1 [Homo sapiens]
Length = 234
Score = 37.4 bits (85), Expect = 0.021
Identities = 25/57 (43%), Positives = 29/57 (50%), Gaps = 13/57 (22%)
Query: 283 AARPGARRGGRRPRSPSPARGEPEPEPERSGAARSGTGAESRAGAGASGALTSGPAA 339
A R G R +R R P P EPEPEPE G SRAGA + L++GP A
Sbjct: 39 AQRQGGRTSSQRQRDPEP---EPEPEPE---------GGRSRAGA-QNDQLSTGPRA 82
>gi|239751791 PREDICTED: hypothetical protein [Homo sapiens]
Length = 650
Score = 37.4 bits (85), Expect = 0.021
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Query: 279 GWSVAARPGARRGGRRPRSPSPARGEPEPEPERSGAARSGTGAESRAGAGASGALTSGPA 338
G + + RP R GG RPR PARG+ P +R S + A AS P
Sbjct: 201 GPTSSRRPWGRAGGLRPRGKRPARGKKRPSSQRR--------CSSPSAARASATSAPRPT 252
Query: 339 AGSAVSRRS 347
A S+V++ S
Sbjct: 253 APSSVAQPS 261
>gi|239746282 PREDICTED: hypothetical protein XP_002343723 [Homo
sapiens]
Length = 725
Score = 37.4 bits (85), Expect = 0.021
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Query: 279 GWSVAARPGARRGGRRPRSPSPARGEPEPEPERSGAARSGTGAESRAGAGASGALTSGPA 338
G + + RP R GG RPR PARG+ P +R S + A AS P
Sbjct: 201 GPTSSRRPWGRAGGLRPRGKRPARGKKRPSSQRR--------CSSPSAARASATSAPRPT 252
Query: 339 AGSAVSRRS 347
A S+V++ S
Sbjct: 253 APSSVAQPS 261
>gi|239746104 PREDICTED: hypothetical protein XP_002344198 [Homo
sapiens]
Length = 398
Score = 37.4 bits (85), Expect = 0.021
Identities = 48/147 (32%), Positives = 57/147 (38%), Gaps = 35/147 (23%)
Query: 227 APTGSHRTGPGCTRRALLGHLPPRRCSQL------------RSLGLRRAELEGECQ-HER 273
+PT R PG T A+ G P RC + + L RA L Q E
Sbjct: 36 SPTPRSRVSPGVTSLAV-GPGNPTRCQRSGVPYEGPGAPGGQQLRKSRARLPRTRQGRED 94
Query: 274 LGTGHGWSVAARPG----------ARRGGRRPRSPSPAR---GEPEPEPERSGAA---RS 317
G G A PG AR G R + +P R GEP+ P RSG + RS
Sbjct: 95 AGVGRRNRDPAEPGSLRPTSLGFPARAGQGRVQGAAPGRKLRGEPKTPPGRSGPSGGVRS 154
Query: 318 GTG-----AESRAGAGASGALTSGPAA 339
G G AE + GAG S GP A
Sbjct: 155 GAGHRAAAAEHQLGAGFSVRNGPGPPA 181
>gi|150170729 microtubule associated serine/threonine kinase 3 [Homo
sapiens]
Length = 1309
Score = 37.4 bits (85), Expect = 0.021
Identities = 32/100 (32%), Positives = 37/100 (37%), Gaps = 25/100 (25%)
Query: 271 HERLGTGHGWSVAARPGARRGGRR--------------------PRSPSPARGEPEPEPE 310
H R + HG + P + GRR PRSPSP G P P P
Sbjct: 1155 HTRPSSLHGLAAKLGPPRPKTGRRKSTSSIPPSPLACPPISAPPPRSPSPLPGHP-PAPA 1213
Query: 311 RSGAARSGTGAESRAGA----GASGALTSGPAAGSAVSRR 346
RS R G A+ G +G T GP A V RR
Sbjct: 1214 RSPRLRRGQSADKLGTGERLDGEAGRRTRGPEAELVVMRR 1253
Score = 29.6 bits (65), Expect = 4.4
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 12/74 (16%)
Query: 287 GARRGGRRPRSPSPAR---GEPEPEPERSGAARSGTGAESRAGAGASGALTSGPAAGSAV 343
GAR RP R G +P PE+S A+ SG +G G+ G + ++V
Sbjct: 849 GARHSTPRPLDAGRGRRLGGPRDPAPEKSRASSSG-----GSGGGSGGRVPK----SASV 899
Query: 344 SRRSLLATAGAAAG 357
S SL+ TA +G
Sbjct: 900 SALSLIITADDGSG 913
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 37.0 bits (84), Expect = 0.027
Identities = 82/352 (23%), Positives = 129/352 (36%), Gaps = 65/352 (18%)
Query: 44 RTPAAGTSAPLCRCREESEGPRSP---LPLTCKRKRSASAALPAAMHWNDAFWPALTS-- 98
RTP A SA L GPRS P+ R+A+A PA++ + PAL+
Sbjct: 2328 RTPQAPASANLV-------GPRSAHATAPVNIAGSRTAAALAPASLT-SARMAPALSGAN 2379
Query: 99 -TSPRREKCGAFAAGLELHRELG--LHPLQAGAAAAHTPYPCAPKSADSQLSLVPLTAVG 155
TSPR L + + P A + TP P AP + P
Sbjct: 2380 LTSPR--------VPLSAYERVSGRTSPPLLDRARSRTP-PSAPSQSRMTSERAPS---- 2426
Query: 156 SSHIPHSTAQGAPINAHVD-AQGARAVPVPAV----QEVAELHTVGIILAQALEDDMGSL 210
P S AP + + AQ PVP+ T + +Q+L G++
Sbjct: 2427 ----PSSRMGQAPSQSLLPPAQDQPRSPVPSAFSDQSRCLIAQTTPVAGSQSLSS--GAV 2480
Query: 211 AWGMLGSVDHQG-------GFALAPTGSHRTGPGCTRRALLGHLPP---RRCSQLRSLGL 260
A + DH G G + G G + + L L P RR S S
Sbjct: 2481 ATTTSSAGDHNGMLSVPAPGVPHSDVGEPPASTGAQQPSALAALQPAKERRSSSSSSSSS 2540
Query: 261 RRAELEGECQHERLGTG------HGWSVAARPGARRGGRRPRSPSPARGE-------PEP 307
+ +G G S+ +P +R SP+PA E PEP
Sbjct: 2541 SSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQPEVAL--KRVPSPTPAPKEAVREGRPPEP 2598
Query: 308 EPERSGAARSGTGAESRAGAGASGALTSGPAAGSAVSRRSLLATAGAAAGPA 359
P + S + + S + + +S + +S ++ S+ S S +++ +++ P+
Sbjct: 2599 TPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPS 2650
Score = 31.6 bits (70), Expect = 1.2
Identities = 40/140 (28%), Positives = 49/140 (35%), Gaps = 14/140 (10%)
Query: 227 APTGSHRTGPGCTRRALLGHLPPRRCSQLRSLGLRRAELEGECQHERLGTGHGWSVAARP 286
A G R+ R P RR S+ R+ RR+ R G S + P
Sbjct: 568 ATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSR-------SRTPARRGRSRSRTP 620
Query: 287 GARRGGRRPRSPSPARGEPEPEPERSGAARSGTGA-----ESRAGAGASGALTSGPAAGS 341
RR R RSP R RSG +RS T A SR A + + PA S
Sbjct: 621 ARRRS--RTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPARRGRSRSRTPARRS 678
Query: 342 AVSRRSLLATAGAAAGPAAR 361
SR A G + R
Sbjct: 679 GRSRSRTPARRGRSRSRTPR 698
Score = 30.8 bits (68), Expect = 2.0
Identities = 41/141 (29%), Positives = 52/141 (36%), Gaps = 10/141 (7%)
Query: 227 APTGSHRTGPGCTRRALLGHLPPRRCSQLRSLGLRRAELEGECQHERLGTGHGWSVAARP 286
+PT +R+ R H P RR + RS A + R T G S + P
Sbjct: 456 SPTSKNRSHGRAKRDKSHSHTPSRRMGRSRS----PATAKRGRSRSRTPTKRGHSRSRSP 511
Query: 287 GARRGG---RRPRSPSPARGEPEPEPERSGAARS-GTGAESRAGAGASGALTSGPAAGSA 342
RR R RS SP R P+R G +RS T R+ + G S A
Sbjct: 512 QWRRSRSAQRWGRSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRG 571
Query: 343 VSRRSLLATAGAAAG--PAAR 361
SR A G + PA R
Sbjct: 572 RSRSRTPARRGRSRSRTPARR 592
Score = 29.3 bits (64), Expect = 5.7
Identities = 28/92 (30%), Positives = 36/92 (39%), Gaps = 18/92 (19%)
Query: 249 PRRCSQLRSLGLRRAELEGECQHERLGTGHGWSVA------ARPGARRGGRRPRSPSPAR 302
P+R RS R + G + R G H S A +R ARRG R R+P+ R
Sbjct: 537 PQRPGWSRS---RNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRR 593
Query: 303 GEPEP---------EPERSGAARSGTGAESRA 325
P R G +RS T A R+
Sbjct: 594 SRSRTPTRRRSRSRTPARRGRSRSRTPARRRS 625
>gi|92859678 small nuclear RNA activating complex, polypeptide 4,
190kDa [Homo sapiens]
Length = 1469
Score = 37.0 bits (84), Expect = 0.027
Identities = 45/151 (29%), Positives = 62/151 (41%), Gaps = 18/151 (11%)
Query: 46 PAAGTSAPLCRCREESEGPRSPLPLTCKRKR-SASAALPAAMHWNDAFWPALTSTSPRRE 104
P +G AP + + G + K KR S ALP A +++A T+P
Sbjct: 951 PLSGPGAPAA-AKPGTSGSWQEAGTSAKDKRLSTMQALPLAPVFSEA-----EGTAPAAS 1004
Query: 105 KCGAFAAGLELHR--ELGLHPLQAGAAAAHTPYPCAPKSADSQLSLVPL-------TAVG 155
+ A G E GL QA AA+ P AP + S PL T +G
Sbjct: 1005 QAPALGPGQISVSCPESGLGQSQAPAASRKQGLPEAPPFLPAAPSPTPLPVQPLSLTHIG 1064
Query: 156 SSHIPHSTAQGAPINAHVDAQGARAVPVPAV 186
H+ +T+ P+ + AQG VPVPAV
Sbjct: 1065 GPHV--ATSVPLPVTWVLTAQGLLPVPVPAV 1093
Score = 28.5 bits (62), Expect = 9.8
Identities = 27/104 (25%), Positives = 36/104 (34%), Gaps = 25/104 (24%)
Query: 280 WSVAARPGARRGGRRPRSPSPARGEPEPEPERSGA----------------------ARS 317
WS + G+ G S S + E EPE++ A AR
Sbjct: 518 WSSTSSSGSSSGSSGGSSSSSSSSSEEDEPEQAQAGEGDRALLSPQYMVPDMDLWVPARQ 577
Query: 318 GTGAESRAGAGA---SGALTSGPAAGSAVSRRSLLATAGAAAGP 358
T R GAGA A + P GS+ S+ + AA P
Sbjct: 578 STSQPWRGGAGAWLGGPAASLSPPKGSSASQGGSKEASTTAAAP 621
>gi|71274172 ankyrin repeat domain 56 [Homo sapiens]
Length = 793
Score = 37.0 bits (84), Expect = 0.027
Identities = 28/76 (36%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Query: 287 GARRGGRRPRSPSPARGEPEPEPERSGAARSGTGAESRAGAGASGALTSGPAAGSAVS-R 345
GARRG + P R E EPE E +GAA A G+ G GS S
Sbjct: 109 GARRGEPPQQQPRRRRREKEPEEEPAGAAARAADAACNGLPGSDSRRAPGKGGGSKGSPG 168
Query: 346 RSLLATAGAAAGPAAR 361
+ A AAAG AR
Sbjct: 169 QRPPVPAAAAAGAQAR 184
>gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein
[Homo sapiens]
Length = 3969
Score = 36.6 bits (83), Expect = 0.036
Identities = 30/98 (30%), Positives = 40/98 (40%), Gaps = 18/98 (18%)
Query: 280 WSVAARPGARRGG----RR-----PRSPSPARGEPEPEPERSG---------AARSGTGA 321
W ARPG GG RR PR PA P P G A + A
Sbjct: 7 WRFPARPGTTGGGGGGGRRGLGGAPRQRVPALLLPPGPPVGGGGPGAPPSPPAVAAAAAA 66
Query: 322 ESRAGAGASGALTSGPAAGSAVSRRSLLATAGAAAGPA 359
+GAG G + AA S+ + S +++ A++GPA
Sbjct: 67 AGSSGAGVPGGAAAASAASSSSASSSSSSSSSASSGPA 104
>gi|145309302 cell division cycle 2-like 5 isoform 1 [Homo sapiens]
Length = 1512
Score = 36.6 bits (83), Expect = 0.036
Identities = 43/158 (27%), Positives = 61/158 (38%), Gaps = 24/158 (15%)
Query: 175 AQGARAVPVPAVQEVAELHTVGIILAQALEDDMGSLAWGMLGSVDHQGGFALAPTGSHRT 234
+ G P+ ++V+ G++L A + A G GS GG + +G+ R
Sbjct: 135 SSGGGVTPLVEYEDVSSQSEQGLLLGGASAATAATAAGGTGGS----GGSPASSSGTQRR 190
Query: 235 GPGCTRRALLGHLPPRRCSQLRSLGLRRAELEGECQHERLGTGHGWSVAARPGARRGGRR 294
G G RR PRR RS R E E H R G S A+ +
Sbjct: 191 GEGSERR-------PRR--DRRSSSGRSKERHRE--HRRRDGQRGGSEAS---------K 230
Query: 295 PRSPSPARGEPEPEPERSGAARSGTGAESRAGAGASGA 332
RS GE E +SG++ S G A A +S +
Sbjct: 231 SRSRHSHSGEERAEVAKSGSSSSSGGRRKSASATSSSS 268
Score = 29.6 bits (65), Expect = 4.4
Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 18/93 (19%)
Query: 284 ARPGARRGGRRPRSPSPARGEPE--------PEPERSGAARSGTGA--------ESRAGA 327
AR R GGR+ R P G+ P+P++ G + +G E +
Sbjct: 93 ARGKRRAGGRQKRRRGPRAGQEAEKRRVFSLPQPQQDGGGGASSGGGVTPLVEYEDVSSQ 152
Query: 328 GASGALTSGPAAGSAVSRRSLLATAGAAAGPAA 360
G L G +A +A + T G+ PA+
Sbjct: 153 SEQGLLLGGASAATAATAAG--GTGGSGGSPAS 183
>gi|145309300 cell division cycle 2-like 5 isoform 2 [Homo sapiens]
Length = 1452
Score = 36.6 bits (83), Expect = 0.036
Identities = 43/158 (27%), Positives = 61/158 (38%), Gaps = 24/158 (15%)
Query: 175 AQGARAVPVPAVQEVAELHTVGIILAQALEDDMGSLAWGMLGSVDHQGGFALAPTGSHRT 234
+ G P+ ++V+ G++L A + A G GS GG + +G+ R
Sbjct: 135 SSGGGVTPLVEYEDVSSQSEQGLLLGGASAATAATAAGGTGGS----GGSPASSSGTQRR 190
Query: 235 GPGCTRRALLGHLPPRRCSQLRSLGLRRAELEGECQHERLGTGHGWSVAARPGARRGGRR 294
G G RR PRR RS R E E H R G S A+ +
Sbjct: 191 GEGSERR-------PRR--DRRSSSGRSKERHRE--HRRRDGQRGGSEAS---------K 230
Query: 295 PRSPSPARGEPEPEPERSGAARSGTGAESRAGAGASGA 332
RS GE E +SG++ S G A A +S +
Sbjct: 231 SRSRHSHSGEERAEVAKSGSSSSSGGRRKSASATSSSS 268
Score = 29.6 bits (65), Expect = 4.4
Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 18/93 (19%)
Query: 284 ARPGARRGGRRPRSPSPARGEPE--------PEPERSGAARSGTGA--------ESRAGA 327
AR R GGR+ R P G+ P+P++ G + +G E +
Sbjct: 93 ARGKRRAGGRQKRRRGPRAGQEAEKRRVFSLPQPQQDGGGGASSGGGVTPLVEYEDVSSQ 152
Query: 328 GASGALTSGPAAGSAVSRRSLLATAGAAAGPAA 360
G L G +A +A + T G+ PA+
Sbjct: 153 SEQGLLLGGASAATAATAAG--GTGGSGGSPAS 183
>gi|239756566 PREDICTED: hypothetical protein [Homo sapiens]
Length = 214
Score = 36.2 bits (82), Expect = 0.047
Identities = 39/111 (35%), Positives = 46/111 (41%), Gaps = 12/111 (10%)
Query: 251 RCSQLRSLGLRRAELEGE----CQHERLGTGHGWSVAARPGARRGGR-RPRSPSPARGEP 305
R Q RSLG A + G CQ G G + R A GR RPR P RG+P
Sbjct: 98 RSFQPRSLGGSLAGIAGPRPSPCQAHDCERGGGGRPSHRAAAVDQGRPRPRVP---RGQP 154
Query: 306 EPEPERSGAARSGTGAESRAGAGASGALTSGPAAGSAVSRRSLLATAGAAA 356
P S AA G G + +GA G L G A G R +T +A
Sbjct: 155 LPGLHPSAAA-PGVGGRA---SGAGGLLGEGAAGGGGAHLRHSCSTGRGSA 201
>gi|239750574 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1297
Score = 36.2 bits (82), Expect = 0.047
Identities = 75/330 (22%), Positives = 118/330 (35%), Gaps = 40/330 (12%)
Query: 47 AAGTSAPLCRCREESEGPRSPLPLTCKRKRSASAALPAAMHWNDAFWPALTSTSPRREKC 106
A +AP R E G + + C + +A A + A + + W + R
Sbjct: 646 APAAAAPTAR--EGRAGRHGHVAVVCPQV-AAGAPVGADLDVSVVLWVGVVGHLGRGRGA 702
Query: 107 GAFAAGLELHRELGLHP---LQAGAAA-AHTPYPCAPKSADSQLSLVPLTAVGSSHIPHS 162
G A RE G H +Q G H P P L+ + +G +P
Sbjct: 703 GR-AEAARAAREGGPHQGVFIQRGRGGLGHRPLPGWRGQGVGPLAQPSVQVLG--RVPRD 759
Query: 163 TAQGA------PINAHVDAQGARAVPVPAVQEVAELHTVGIILAQALEDDMGSLAW-GML 215
A GA P++ HV + A V + + G+ ++ + +AW G +
Sbjct: 760 PAVGAATVAQGPVHGHVPVELTAAAAVSGRGRLRD----GLGRVASVAAEGAQVAWAGAV 815
Query: 216 GSVDHQGGFALAPTGSHRTGPGCTRRALLGHLPPRRCSQLR---------SLGLRRAELE 266
H+ G A G G A++ + RR R + G + A
Sbjct: 816 LVQGHEAGVAGGARGGGAAAGGPLAGAVVQRMRQRRVRAGRRRVGARAVAAAGRQGAGAG 875
Query: 267 GECQHERLGTGHGWSVAARPGARRGGRRPRSPSPARGEPEPEPERSGAARSGTGAESRAG 326
G + R G GHG +V R R+ +R +P+ A + R+ G R G
Sbjct: 876 GGGRRVRHGHGHGAAVLQRAPCRQ--QRHLAPAAAAAAAQ-------GVRAAQGRAHRPG 926
Query: 327 AGASGALTSGPAA-GSAVSRRSLLATAGAA 355
A + + P A G RR+ +A AG A
Sbjct: 927 AQGAPSHRHRPGARGRRSRRRAAVALAGGA 956
Score = 30.0 bits (66), Expect = 3.4
Identities = 31/96 (32%), Positives = 35/96 (36%), Gaps = 10/96 (10%)
Query: 271 HERLGTGHGWSVAARPGARRGGRRPRSPSPARGEPEPEPERSGA-----ARSGTGAESRA 325
H +LGT V G GGR +PAR E P R G R G
Sbjct: 565 HGQLGTAPHAHVPTVLGGALGGRAGLVAAPARREC-PARRRGGCWPRRPRRRHGGGGGGG 623
Query: 326 GAGASGALTSGPAAGSAVSRRSLLATAGAAAGPAAR 361
G G L G A G+ + A AAA P AR
Sbjct: 624 GPGLQDLLGGGHAGGA----HGHVVVAPAAAAPTAR 655
Score = 28.5 bits (62), Expect = 9.8
Identities = 31/100 (31%), Positives = 35/100 (35%), Gaps = 17/100 (17%)
Query: 277 GHGWSVAARPGARRGGRRPRSPSPARGEPEPEPERSGAARSGTGAESRAGAGASGA---- 332
GH VA GAR GG P R A R GA + A AG GA
Sbjct: 819 GHEAGVAG--GARGGGAAAGGPLAGAVVQRMRQRRVRAGRRRVGARAVAAAGRQGAGAGG 876
Query: 333 ----LTSGPAAGSAV-------SRRSLLATAGAAAGPAAR 361
+ G G+AV +R L A AAA R
Sbjct: 877 GGRRVRHGHGHGAAVLQRAPCRQQRHLAPAAAAAAAQGVR 916
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.129 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,694,520
Number of Sequences: 37866
Number of extensions: 952455
Number of successful extensions: 8959
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 597
Number of HSP's that attempted gapping in prelim test: 7514
Number of HSP's gapped (non-prelim): 1834
length of query: 361
length of database: 18,247,518
effective HSP length: 104
effective length of query: 257
effective length of database: 14,309,454
effective search space: 3677529678
effective search space used: 3677529678
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.