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Search of human proteins with 239752651
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239752651 PREDICTED: similar to hCG2042721 [Homo sapiens]
(168 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752651 PREDICTED: similar to hCG2042721 [Homo sapiens] 335 8e-93
gi|239740993 PREDICTED: hypothetical protein XP_002342057 [Homo ... 332 1e-91
gi|239747606 PREDICTED: hypothetical protein XP_002347888 [Homo ... 330 3e-91
gi|239741478 PREDICTED: hypothetical protein XP_002342228 [Homo ... 328 1e-90
gi|62243734 signal transducing adaptor family member 2 isoform 1... 39 0.002
gi|169216486 PREDICTED: hCG_1742852 [Homo sapiens] 38 0.005
gi|169216528 PREDICTED: hCG_1742852 [Homo sapiens] 38 0.005
gi|217035093 cyclic nucleotide gated channel alpha 1 isoform 1 [... 37 0.006
gi|239747074 PREDICTED: hypothetical protein XP_002343911 [Homo ... 37 0.006
gi|169216761 PREDICTED: hCG_1742852 [Homo sapiens] 37 0.006
gi|237858668 hypothetical protein LOC123207 isoform d [Homo sapi... 37 0.010
gi|54112407 protein kinase CHK2 isoform c [Homo sapiens] 36 0.018
gi|78482627 ring finger protein 30 isoform 1 [Homo sapiens] 33 0.088
gi|4506473 v-rel reticuloendotheliosis viral oncogene homolog [H... 33 0.12
gi|169213800 PREDICTED: hypothetical protein [Homo sapiens] 33 0.12
gi|169214229 PREDICTED: hypothetical protein [Homo sapiens] 33 0.12
gi|169213573 PREDICTED: hypothetical protein [Homo sapiens] 33 0.12
gi|61744475 solute carrier family 3, member 2 isoform a [Homo sa... 33 0.12
gi|195963398 suppressor of G2 allele of SKP1 isoform a [Homo sap... 33 0.15
gi|194473995 zinc finger protein 195 isoform 2 [Homo sapiens] 32 0.26
gi|194473688 zinc finger protein 195 isoform 1 [Homo sapiens] 32 0.26
gi|62198241 cutA divalent cation tolerance homolog isoform 1 [Ho... 31 0.44
gi|58533176 zinc finger, matrin type 1 isoform 1 [Homo sapiens] 30 0.75
gi|169213867 PREDICTED: hypothetical protein LOC100128682 [Homo ... 30 0.97
gi|169214305 PREDICTED: hypothetical protein LOC100128682 [Homo ... 30 0.97
gi|169213267 PREDICTED: hypothetical protein LOC100128682 [Homo ... 30 0.97
gi|66277202 podocalyxin-like isoform 1 precursor [Homo sapiens] 30 0.97
gi|28212280 hypothetical protein LOC283579 [Homo sapiens] 30 0.97
gi|33188429 tetratricopeptide repeat protein isoform 1 [Homo sap... 30 1.3
gi|58294160 breast carcinoma amplified sequence 4 isoform a [Hom... 29 1.7
>gi|239752651 PREDICTED: similar to hCG2042721 [Homo sapiens]
Length = 168
Score = 335 bits (860), Expect = 8e-93
Identities = 168/168 (100%), Positives = 168/168 (100%)
Query: 1 MPKGWGVRSSTFLPLWLPVKIELHQVQFHSSSQMIFSTLRSELYKLLALCQHAVVPMGKF 60
MPKGWGVRSSTFLPLWLPVKIELHQVQFHSSSQMIFSTLRSELYKLLALCQHAVVPMGKF
Sbjct: 1 MPKGWGVRSSTFLPLWLPVKIELHQVQFHSSSQMIFSTLRSELYKLLALCQHAVVPMGKF 60
Query: 61 LGKTKTQSQGQVVIFSEKGKAIIYLSLPRTVPIYTCIFSQSVGCLFILLIISLNFLLFIY 120
LGKTKTQSQGQVVIFSEKGKAIIYLSLPRTVPIYTCIFSQSVGCLFILLIISLNFLLFIY
Sbjct: 61 LGKTKTQSQGQVVIFSEKGKAIIYLSLPRTVPIYTCIFSQSVGCLFILLIISLNFLLFIY 120
Query: 121 FIETDLIMLPRVILDLPASSDPPTLVSQSAGITDVNYHTQSTCRRFSV 168
FIETDLIMLPRVILDLPASSDPPTLVSQSAGITDVNYHTQSTCRRFSV
Sbjct: 121 FIETDLIMLPRVILDLPASSDPPTLVSQSAGITDVNYHTQSTCRRFSV 168
>gi|239740993 PREDICTED: hypothetical protein XP_002342057 [Homo
sapiens]
Length = 168
Score = 332 bits (850), Expect = 1e-91
Identities = 167/168 (99%), Positives = 167/168 (99%)
Query: 1 MPKGWGVRSSTFLPLWLPVKIELHQVQFHSSSQMIFSTLRSELYKLLALCQHAVVPMGKF 60
MPKGWGVRSSTFLPLWLPVKIELHQVQFHSSSQMIFSTLRSELYKLLALCQHAVVPMGKF
Sbjct: 1 MPKGWGVRSSTFLPLWLPVKIELHQVQFHSSSQMIFSTLRSELYKLLALCQHAVVPMGKF 60
Query: 61 LGKTKTQSQGQVVIFSEKGKAIIYLSLPRTVPIYTCIFSQSVGCLFILLIISLNFLLFIY 120
LGKTKTQSQGQVVIFSEKGKAIIYLSLPRTVPIYTCIFSQSVGCLFILLIISLNFLLFIY
Sbjct: 61 LGKTKTQSQGQVVIFSEKGKAIIYLSLPRTVPIYTCIFSQSVGCLFILLIISLNFLLFIY 120
Query: 121 FIETDLIMLPRVILDLPASSDPPTLVSQSAGITDVNYHTQSTCRRFSV 168
FIETDLIMLPRVILDL ASSDPPTLVSQSAGITDVNYHTQSTCRRFSV
Sbjct: 121 FIETDLIMLPRVILDLLASSDPPTLVSQSAGITDVNYHTQSTCRRFSV 168
>gi|239747606 PREDICTED: hypothetical protein XP_002347888 [Homo
sapiens]
Length = 168
Score = 330 bits (846), Expect = 3e-91
Identities = 166/168 (98%), Positives = 166/168 (98%)
Query: 1 MPKGWGVRSSTFLPLWLPVKIELHQVQFHSSSQMIFSTLRSELYKLLALCQHAVVPMGKF 60
MPKGWGVRSSTFLPLWLPVKIELHQVQFHSSSQMIFSTLRSELYKLLALCQHAVVPMGKF
Sbjct: 1 MPKGWGVRSSTFLPLWLPVKIELHQVQFHSSSQMIFSTLRSELYKLLALCQHAVVPMGKF 60
Query: 61 LGKTKTQSQGQVVIFSEKGKAIIYLSLPRTVPIYTCIFSQSVGCLFILLIISLNFLLFIY 120
LGKTKTQSQGQVVIFSEKGKAIIYLSLPRTVPIYTCIFSQSVGCLFILLIIS NFLLFIY
Sbjct: 61 LGKTKTQSQGQVVIFSEKGKAIIYLSLPRTVPIYTCIFSQSVGCLFILLIISFNFLLFIY 120
Query: 121 FIETDLIMLPRVILDLPASSDPPTLVSQSAGITDVNYHTQSTCRRFSV 168
FIETDLIMLPRVILDL ASSDPPTLVSQSAGITDVNYHTQSTCRRFSV
Sbjct: 121 FIETDLIMLPRVILDLLASSDPPTLVSQSAGITDVNYHTQSTCRRFSV 168
>gi|239741478 PREDICTED: hypothetical protein XP_002342228 [Homo
sapiens]
Length = 168
Score = 328 bits (841), Expect = 1e-90
Identities = 165/168 (98%), Positives = 165/168 (98%)
Query: 1 MPKGWGVRSSTFLPLWLPVKIELHQVQFHSSSQMIFSTLRSELYKLLALCQHAVVPMGKF 60
MPKGWGVRSSTFLPLWLPVKIELHQVQFHSSSQMIFSTLRSELYKLLALCQHAVVPMGKF
Sbjct: 1 MPKGWGVRSSTFLPLWLPVKIELHQVQFHSSSQMIFSTLRSELYKLLALCQHAVVPMGKF 60
Query: 61 LGKTKTQSQGQVVIFSEKGKAIIYLSLPRTVPIYTCIFSQSVGCLFILLIISLNFLLFIY 120
LGKTKTQ QGQVVIFSEKGKAIIYLSLPRTVPIYTCIFSQSVGCLFILLIIS NFLLFIY
Sbjct: 61 LGKTKTQPQGQVVIFSEKGKAIIYLSLPRTVPIYTCIFSQSVGCLFILLIISFNFLLFIY 120
Query: 121 FIETDLIMLPRVILDLPASSDPPTLVSQSAGITDVNYHTQSTCRRFSV 168
FIETDLIMLPRVILDL ASSDPPTLVSQSAGITDVNYHTQSTCRRFSV
Sbjct: 121 FIETDLIMLPRVILDLLASSDPPTLVSQSAGITDVNYHTQSTCRRFSV 168
>gi|62243734 signal transducing adaptor family member 2 isoform 1
[Homo sapiens]
Length = 449
Score = 38.9 bits (89), Expect = 0.002
Identities = 18/26 (69%), Positives = 21/26 (80%)
Query: 134 LDLPASSDPPTLVSQSAGITDVNYHT 159
L+L SSDPPT SQSAGIT V++HT
Sbjct: 370 LELLTSSDPPTSASQSAGITGVSHHT 395
>gi|169216486 PREDICTED: hCG_1742852 [Homo sapiens]
Length = 402
Score = 37.7 bits (86), Expect = 0.005
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 118 FIYFIETDLIMLPRVILDLPASSDPPTLVSQSAGITDVNY 157
F+ +ET + + + L+L S DPPT SQSAGIT V++
Sbjct: 350 FVVLVETVFLHVDQAGLELLISGDPPTSASQSAGITGVSH 389
>gi|169216528 PREDICTED: hCG_1742852 [Homo sapiens]
Length = 402
Score = 37.7 bits (86), Expect = 0.005
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 118 FIYFIETDLIMLPRVILDLPASSDPPTLVSQSAGITDVNY 157
F+ +ET + + + L+L S DPPT SQSAGIT V++
Sbjct: 350 FVVLVETVFLHVDQAGLELLISGDPPTSASQSAGITGVSH 389
>gi|217035093 cyclic nucleotide gated channel alpha 1 isoform 1
[Homo sapiens]
Length = 759
Score = 37.4 bits (85), Expect = 0.006
Identities = 25/67 (37%), Positives = 35/67 (52%)
Query: 89 RTVPIYTCIFSQSVGCLFILLIISLNFLLFIYFIETDLIMLPRVILDLPASSDPPTLVSQ 148
R+ P C + S C L S L+F++ +E + + L+L SSD PT SQ
Sbjct: 4 RSSPRLECSGAISAHCSLHLPDSSDFQLIFVFLVEMGFHHVGQAGLELLISSDLPTSASQ 63
Query: 149 SAGITDV 155
SAGITD+
Sbjct: 64 SAGITDM 70
>gi|239747074 PREDICTED: hypothetical protein XP_002343911 [Homo
sapiens]
Length = 402
Score = 37.4 bits (85), Expect = 0.006
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 118 FIYFIETDLIMLPRVILDLPASSDPPTLVSQSAGITDVNY 157
F+ +ET + + + L+L S DPPT SQSAGIT V +
Sbjct: 350 FVVLVETVFLHVDQAGLELLISGDPPTSASQSAGITGVTH 389
>gi|169216761 PREDICTED: hCG_1742852 [Homo sapiens]
Length = 402
Score = 37.4 bits (85), Expect = 0.006
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 118 FIYFIETDLIMLPRVILDLPASSDPPTLVSQSAGITDVNY 157
F+ +ET + + + L+L S DPPT SQSAGIT V +
Sbjct: 350 FVVLVETVFLHVDQAGLELLISGDPPTSASQSAGITGVTH 389
>gi|237858668 hypothetical protein LOC123207 isoform d [Homo
sapiens]
Length = 167
Score = 36.6 bits (83), Expect = 0.010
Identities = 18/27 (66%), Positives = 21/27 (77%)
Query: 134 LDLPASSDPPTLVSQSAGITDVNYHTQ 160
L+L ASSD P SQSAGIT V++HTQ
Sbjct: 133 LELLASSDLPASASQSAGITGVSHHTQ 159
>gi|54112407 protein kinase CHK2 isoform c [Homo sapiens]
Length = 586
Score = 35.8 bits (81), Expect = 0.018
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 122 IETDLIMLPRVILDLPASSDPPTLVSQSAGITDVNYHTQSTC 163
+ET+ + + L+L SSDPP SQSAGI V +H + C
Sbjct: 106 LETESGHVTQSDLELLLSSDPPASASQSAGIRGVRHHPRPVC 147
>gi|78482627 ring finger protein 30 isoform 1 [Homo sapiens]
Length = 400
Score = 33.5 bits (75), Expect = 0.088
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 10/40 (25%)
Query: 125 DLIMLPRV----------ILDLPASSDPPTLVSQSAGITD 154
DL +LPR+ LDLP+SSDPP L SQ+ I D
Sbjct: 174 DLTLLPRLECSGTNTTYCSLDLPSSSDPPILASQNTKIID 213
>gi|4506473 v-rel reticuloendotheliosis viral oncogene homolog [Homo
sapiens]
Length = 619
Score = 33.1 bits (74), Expect = 0.12
Identities = 19/36 (52%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 122 IETDLIMLPRVILDLPASSDPPTLVSQSAGITDVNY 157
+ET + + L+L S DPPTL SQSAGIT VN+
Sbjct: 308 VETGFRHVDQDGLELLTSGDPPTLASQSAGIT-VNF 342
>gi|169213800 PREDICTED: hypothetical protein [Homo sapiens]
Length = 142
Score = 33.1 bits (74), Expect = 0.12
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 134 LDLPASSDPPTLVSQSAGITDVNYHTQS 161
L+L SSDPPT SQ+A IT V++ QS
Sbjct: 11 LELLTSSDPPTSASQNAEITGVSHRAQS 38
>gi|169214229 PREDICTED: hypothetical protein [Homo sapiens]
Length = 142
Score = 33.1 bits (74), Expect = 0.12
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 134 LDLPASSDPPTLVSQSAGITDVNYHTQS 161
L+L SSDPPT SQ+A IT V++ QS
Sbjct: 11 LELLTSSDPPTSASQNAEITGVSHRAQS 38
>gi|169213573 PREDICTED: hypothetical protein [Homo sapiens]
Length = 142
Score = 33.1 bits (74), Expect = 0.12
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 134 LDLPASSDPPTLVSQSAGITDVNYHTQS 161
L+L SSDPPT SQ+A IT V++ QS
Sbjct: 11 LELLTSSDPPTSASQNAEITGVSHRAQS 38
>gi|61744475 solute carrier family 3, member 2 isoform a [Homo
sapiens]
Length = 661
Score = 33.1 bits (74), Expect = 0.12
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 122 IETDLIMLPRVILDLPASSDPPTLVSQSAGITDVNYH 158
IET + + L L ASSDPP L S++A +T+ +H
Sbjct: 68 IETGSDCVTQAGLQLLASSDPPALASKNAEVTETGFH 104
>gi|195963398 suppressor of G2 allele of SKP1 isoform a [Homo
sapiens]
Length = 365
Score = 32.7 bits (73), Expect = 0.15
Identities = 20/38 (52%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 122 IETDLIMLPRVILDLPASSDPPTLVSQSAGIT--DVNY 157
IET + + L L SSDPP L SQSAGIT D N+
Sbjct: 110 IETGFHRVGQAGLQLLTSSDPPALDSQSAGITGADANF 147
>gi|194473995 zinc finger protein 195 isoform 2 [Homo sapiens]
Length = 606
Score = 32.0 bits (71), Expect = 0.26
Identities = 16/27 (59%), Positives = 18/27 (66%)
Query: 134 LDLPASSDPPTLVSQSAGITDVNYHTQ 160
L+L SSD P SQSAGIT VN+ Q
Sbjct: 87 LELLGSSDLPASASQSAGITGVNHRAQ 113
>gi|194473688 zinc finger protein 195 isoform 1 [Homo sapiens]
Length = 629
Score = 32.0 bits (71), Expect = 0.26
Identities = 16/27 (59%), Positives = 18/27 (66%)
Query: 134 LDLPASSDPPTLVSQSAGITDVNYHTQ 160
L+L SSD P SQSAGIT VN+ Q
Sbjct: 87 LELLGSSDLPASASQSAGITGVNHRAQ 113
>gi|62198241 cutA divalent cation tolerance homolog isoform 1 [Homo
sapiens]
Length = 198
Score = 31.2 bits (69), Expect = 0.44
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 88 PRTVPIYTCIFSQSVGCLFILLIISLNFLLFIYFIETDLIMLPRVILDLPASSDPPTLVS 147
P + + +FS V L++S ++ + + + L++LPRV+L + AS PPT S
Sbjct: 15 PSSTVTWCALFSNHVAATQASLLLSFVWMPALLPVASRLLLLPRVLLTM-ASGSPPTQPS 73
Query: 148 QSA 150
++
Sbjct: 74 PAS 76
>gi|58533176 zinc finger, matrin type 1 isoform 1 [Homo sapiens]
Length = 638
Score = 30.4 bits (67), Expect = 0.75
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 134 LDLPASSDPPTLVSQSAGITDVNYHTQSTCRRFS 167
L LP SSD P SQ AG TD ++ Q F+
Sbjct: 21 LHLPGSSDSPASASQIAGTTDAIWNEQEKAELFT 54
>gi|169213867 PREDICTED: hypothetical protein LOC100128682 [Homo
sapiens]
Length = 299
Score = 30.0 bits (66), Expect = 0.97
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 136 LPASSDPPTLVSQSAGITDVNYHTQ 160
L +SD PTL SQS IT V++H Q
Sbjct: 192 LLTASDLPTLASQSVAITGVSHHAQ 216
>gi|169214305 PREDICTED: hypothetical protein LOC100128682 [Homo
sapiens]
Length = 299
Score = 30.0 bits (66), Expect = 0.97
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 136 LPASSDPPTLVSQSAGITDVNYHTQ 160
L +SD PTL SQS IT V++H Q
Sbjct: 192 LLTASDLPTLASQSVAITGVSHHAQ 216
>gi|169213267 PREDICTED: hypothetical protein LOC100128682 [Homo
sapiens]
Length = 299
Score = 30.0 bits (66), Expect = 0.97
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 136 LPASSDPPTLVSQSAGITDVNYHTQ 160
L +SD PTL SQS IT V++H Q
Sbjct: 192 LLTASDLPTLASQSVAITGVSHHAQ 216
>gi|66277202 podocalyxin-like isoform 1 precursor [Homo sapiens]
Length = 558
Score = 30.0 bits (66), Expect = 0.97
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 122 IETDLIMLPRVILDLPASSDPPTLVSQSAGITDVNYHTQST 162
+ET + + L+L S D PTL SQSAGIT + +Q T
Sbjct: 236 LETVFHHVSQAGLELLTSGDLPTLASQSAGITASSVISQRT 276
>gi|28212280 hypothetical protein LOC283579 [Homo sapiens]
Length = 122
Score = 30.0 bits (66), Expect = 0.97
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 134 LDLPASSDPPTLVSQSAGITDVNY 157
L+L SS+PP SQSAGIT V++
Sbjct: 41 LELLGSSNPPASASQSAGITGVSH 64
>gi|33188429 tetratricopeptide repeat protein isoform 1 [Homo sapiens]
Length = 1079
Score = 29.6 bits (65), Expect = 1.3
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 118 FIYFIETDLIMLPRVILDLPASSDPPTLVSQSAGITDVNYHTQ 160
F F+ET + + L+L S SQSAGIT V++H +
Sbjct: 1037 FCIFVETGFHHVGQACLELLTSGGLLASASQSAGITGVSHHAR 1079
>gi|58294160 breast carcinoma amplified sequence 4 isoform a [Homo
sapiens]
Length = 211
Score = 29.3 bits (64), Expect = 1.7
Identities = 15/25 (60%), Positives = 16/25 (64%)
Query: 131 RVILDLPASSDPPTLVSQSAGITDV 155
R L LP SSD P SQ AGIT+V
Sbjct: 173 RCNLRLPGSSDSPASASQVAGITEV 197
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.327 0.140 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,761,983
Number of Sequences: 37866
Number of extensions: 208394
Number of successful extensions: 808
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 758
Number of HSP's gapped (non-prelim): 51
length of query: 168
length of database: 18,247,518
effective HSP length: 95
effective length of query: 73
effective length of database: 14,650,248
effective search space: 1069468104
effective search space used: 1069468104
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Search text |
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.