Guide to the Human Genome
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Name: LOC100287934 Sequence: fasta or formatted (168aa) NCBI GI: 239740993
Description:

PREDICTED: hypothetical protein XP_002342057

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.0          5           1
 C cysteine            2.4          4           1
 D aspartate           2.4          4           1
 E glutamate           2.4          4           1
 F phenylalanine       6.5         11           1
 G glycine             4.8          8           1
 H histidine           2.4          4           1
 I isoleucine          8.9         15           2
 K lysine              4.8          8           1
 L leucine            14.3         24           2
 M methionine          2.4          4           1
 N asparagine          1.2          2           1
 P proline             5.4          9           2
 Q glutamine           6.0         10           1
 R arginine            3.6          6           2
 S serine             11.3         19           3
 T threonine           6.5         11           1
 V valine              7.7         13           2
 W tryptophan          1.2          2           1
 Y tyrosine            3.0          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342057 
LOC100289755          0.997   PREDICTED: hypothetical protein XP_002347888 
LOC100292430          0.994   PREDICTED: similar to hCG2042721 
LOC100287497          0.990   PREDICTED: hypothetical protein XP_002342228 
STAP2                 0.055   signal transducing adaptor family member 2 isoform 1...
LOC100128260          0.049   PREDICTED: hCG_1742852 
LOC100128260          0.049   PREDICTED: hCG_1742852 
CNGA1                 0.049   cyclic nucleotide gated channel alpha 1 isoform 1 [...
LOC100288773          0.049   PREDICTED: hypothetical protein XP_002343911 
LOC100128260          0.049   PREDICTED: hCG_1742852 
C15orf40              0.045   hypothetical protein LOC123207 isoform d 
CHEK2                 0.045   protein kinase CHK2 isoform c 
REL                   0.036   v-rel reticuloendotheliosis viral oncogene homolog [H...
LOC100132815          0.036   PREDICTED: hypothetical protein 
LOC100132815          0.036   PREDICTED: hypothetical protein 
LOC100132815          0.036   PREDICTED: hypothetical protein 
SLC3A2                0.036   solute carrier family 3, member 2 isoform a 
SUGT1                 0.032   suppressor of G2 allele of SKP1 isoform a 
ZNF195                0.032   zinc finger protein 195 isoform 2 
ZNF195                0.032   zinc finger protein 195 isoform 1 
LOC100128682          0.026   PREDICTED: hypothetical protein LOC100128682 
LOC100128682          0.026   PREDICTED: hypothetical protein LOC100128682 
LOC100128682          0.026   PREDICTED: hypothetical protein LOC100128682 
PODXL                 0.026   podocalyxin-like isoform 1 precursor 
C14orf178             0.026   hypothetical protein LOC283579 
UTY                   0.023   tetratricopeptide repeat protein isoform 1 
C16orf89              0.023   hypothetical protein LOC146556 isoform 1 
LOC100294407          0.019   PREDICTED: similar to hCG2039376 
CUTA                  0.019   cutA divalent cation tolerance homolog isoform 1 [Ho...
SLC3A2                0.019   solute carrier family 3, member 2 isoform c 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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