Guide to the Human Genome
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Name: LOC100287258 Sequence: fasta or formatted (191aa) NCBI GI: 239508831
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {191aa} PREDICTED: hypothetical protein XP_002342766
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         16           1
 C cysteine            2.6          5           1
 D aspartate           2.1          4           1
 E glutamate           0.0          0           0
 F phenylalanine       2.1          4           1
 G glycine             3.1          6           1
 H histidine           5.2         10           1
 I isoleucine          1.6          3           1
 K lysine              1.6          3           1
 L leucine            15.2         29           2
 M methionine          1.0          2           1
 N asparagine          1.6          3           1
 P proline            13.1         25           2
 Q glutamine           9.4         18           2
 R arginine            3.7          7           1
 S serine             18.8         36           3
 T threonine           4.7          9           2
 V valine              2.6          5           1
 W tryptophan          1.6          3           1
 Y tyrosine            1.6          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100287258          1.000   PREDICTED: hypothetical protein XP_002342766 
LOC100288155          0.959   PREDICTED: hypothetical protein XP_002342801, parti...
LOC100288155          0.959   PREDICTED: hypothetical protein, partial 
LOC730826             0.926   PREDICTED: hypothetical protein 
LOC100128326          0.913   PREDICTED: hypothetical protein 
LOC100128326          0.913   PREDICTED: hypothetical protein 
LOC100128326          0.913   PREDICTED: hypothetical protein 
LOC100133331          0.883   PREDICTED: hypothetical protein 
LOC100290352          0.831   PREDICTED: hypothetical protein XP_002347695, parti...
LOC731275             0.540   PREDICTED: hypothetical protein 
LOC100132062          0.540   PREDICTED: hypothetical protein 
LOC100133161          0.534   PREDICTED: hypothetical protein 
LOC100132287          0.534   PREDICTED: hypothetical protein 
LOC100132062          0.526   PREDICTED: hypothetical protein 
LOC728417             0.346   PREDICTED: hypothetical protein 
LOC728417             0.346   PREDICTED: hypothetical protein 
LOC728417             0.346   PREDICTED: hypothetical protein isoform 1 
LOC728417             0.335   PREDICTED: hypothetical protein isoform 2 
LOC100294359          0.327   PREDICTED: hypothetical protein 
LOC100129904          0.308   PREDICTED: hypothetical protein 
LOC100129904          0.308   PREDICTED: hypothetical protein 
LOC100129904          0.308   PREDICTED: hypothetical protein 
LOC100129904          0.308   PREDICTED: hypothetical protein 
LOC100292470          0.180   PREDICTED: similar to hCG1779533 
LOC729218             0.180   PREDICTED: hypothetical protein 
LOC100132050          0.166   PREDICTED: similar to hCG1779533 
LOC100132050          0.166   PREDICTED: similar to hCG1779533 
LOC100293878          0.153   PREDICTED: similar to hCG1779533 
LOC729737             0.136   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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