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Search of human proteins with 239752439
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239752439 PREDICTED: hypothetical protein XP_002348274 [Homo
sapiens]
(169 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752439 PREDICTED: hypothetical protein XP_002348274 [Homo ... 353 5e-98
gi|239746959 PREDICTED: hypothetical protein XP_002343897 [Homo ... 353 5e-98
gi|5174543 myocyte enhancer factor 2B isoform b [Homo sapiens] 37 0.008
gi|224809412 myocyte enhancer factor 2B isoform a [Homo sapiens] 37 0.008
gi|13489085 ubiquitin-conjugating enzyme E2G 1 [Homo sapiens] 36 0.018
gi|116805344 proline rich, lacrimal 1 [Homo sapiens] 35 0.040
gi|46488919 astrotactin 2 isoform c [Homo sapiens] 34 0.068
gi|46488917 astrotactin 2 isoform b [Homo sapiens] 34 0.068
gi|46488915 astrotactin 2 isoform a [Homo sapiens] 34 0.068
gi|4505195 mitogen-activated protein kinase kinase kinase 11 [Ho... 34 0.068
gi|239752594 PREDICTED: hypothetical protein, partial [Homo sapi... 33 0.12
gi|113426932 PREDICTED: similar to N-ethylmaleimide-sensitive fa... 31 0.44
gi|239740963 PREDICTED: similar to N-ethylmaleimide-sensitive fa... 31 0.44
gi|31543392 peroxisome proliferator-activated receptor gamma, co... 31 0.44
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 30 0.76
gi|31543452 PX domain containing serine/threonine kinase [Homo s... 30 0.76
gi|54860079 nadrin isoform 1 [Homo sapiens] 30 0.76
gi|54860105 nadrin isoform 2 [Homo sapiens] 30 0.76
gi|38158015 mastermind-like 3 [Homo sapiens] 30 0.76
gi|4557892 lecithin-cholesterol acyltransferase precursor [Homo ... 30 0.99
gi|71043876 undifferentiated embryonic cell transcription factor... 30 0.99
gi|169212085 PREDICTED: similar to poly(A) binding protein inter... 30 1.3
gi|169207312 PREDICTED: hypothetical protein [Homo sapiens] 30 1.3
gi|239752553 PREDICTED: similar to poly(A) binding protein inter... 30 1.3
gi|239750650 PREDICTED: hypothetical protein [Homo sapiens] 30 1.3
gi|239749931 PREDICTED: FLJ43861 protein [Homo sapiens] 30 1.3
gi|169179021 PREDICTED: hypothetical protein [Homo sapiens] 30 1.3
gi|89041275 PREDICTED: similar to poly(A) binding protein intera... 30 1.3
gi|89037350 PREDICTED: hypothetical protein [Homo sapiens] 30 1.3
gi|169181246 PREDICTED: hypothetical protein [Homo sapiens] 30 1.3
>gi|239752439 PREDICTED: hypothetical protein XP_002348274 [Homo
sapiens]
Length = 169
Score = 353 bits (905), Expect = 5e-98
Identities = 169/169 (100%), Positives = 169/169 (100%)
Query: 1 MSLKGHRVSPQGRPKSGERGRRRLTFCLYGSQKPGSPWLPLFLVQSLLLSNPSPLFSPST 60
MSLKGHRVSPQGRPKSGERGRRRLTFCLYGSQKPGSPWLPLFLVQSLLLSNPSPLFSPST
Sbjct: 1 MSLKGHRVSPQGRPKSGERGRRRLTFCLYGSQKPGSPWLPLFLVQSLLLSNPSPLFSPST 60
Query: 61 PPPAQSDCATLNRTKPNQTKPNQTRPDTPSRGIPERPNWDNRMHLISHATECTSAEMGVL 120
PPPAQSDCATLNRTKPNQTKPNQTRPDTPSRGIPERPNWDNRMHLISHATECTSAEMGVL
Sbjct: 61 PPPAQSDCATLNRTKPNQTKPNQTRPDTPSRGIPERPNWDNRMHLISHATECTSAEMGVL 120
Query: 121 ALARQCDLSPPFSLPALHQARARPARASVFRPGTPAGSQQRACARSQAT 169
ALARQCDLSPPFSLPALHQARARPARASVFRPGTPAGSQQRACARSQAT
Sbjct: 121 ALARQCDLSPPFSLPALHQARARPARASVFRPGTPAGSQQRACARSQAT 169
>gi|239746959 PREDICTED: hypothetical protein XP_002343897 [Homo
sapiens]
Length = 169
Score = 353 bits (905), Expect = 5e-98
Identities = 169/169 (100%), Positives = 169/169 (100%)
Query: 1 MSLKGHRVSPQGRPKSGERGRRRLTFCLYGSQKPGSPWLPLFLVQSLLLSNPSPLFSPST 60
MSLKGHRVSPQGRPKSGERGRRRLTFCLYGSQKPGSPWLPLFLVQSLLLSNPSPLFSPST
Sbjct: 1 MSLKGHRVSPQGRPKSGERGRRRLTFCLYGSQKPGSPWLPLFLVQSLLLSNPSPLFSPST 60
Query: 61 PPPAQSDCATLNRTKPNQTKPNQTRPDTPSRGIPERPNWDNRMHLISHATECTSAEMGVL 120
PPPAQSDCATLNRTKPNQTKPNQTRPDTPSRGIPERPNWDNRMHLISHATECTSAEMGVL
Sbjct: 61 PPPAQSDCATLNRTKPNQTKPNQTRPDTPSRGIPERPNWDNRMHLISHATECTSAEMGVL 120
Query: 121 ALARQCDLSPPFSLPALHQARARPARASVFRPGTPAGSQQRACARSQAT 169
ALARQCDLSPPFSLPALHQARARPARASVFRPGTPAGSQQRACARSQAT
Sbjct: 121 ALARQCDLSPPFSLPALHQARARPARASVFRPGTPAGSQQRACARSQAT 169
>gi|5174543 myocyte enhancer factor 2B isoform b [Homo sapiens]
Length = 365
Score = 37.0 bits (84), Expect = 0.008
Identities = 43/167 (25%), Positives = 64/167 (38%), Gaps = 21/167 (12%)
Query: 1 MSLKGHRVSP-QGRPKSGERGRRRLTFCLYGSQKPGSPWLPLFLVQSLLLSNPSPLFSPS 59
+ L G + P +G + GE+ RR + + G P LP + + PSP
Sbjct: 93 IGLDGPELEPDEGPEEPGEKFRRL-------AGEGGDPALPRPRLYPAAPAMPSPDVVYG 145
Query: 60 TPPPAQSDCATLNRTKPNQTKPNQTRPDTPSRGIPERPNWDNRMHLISHATECTSAEMGV 119
PP D + L P Q++P+ RP P G P + + SH T T + +
Sbjct: 146 ALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAG---PPGLVHPLFSPSHLTSKTPPPLYL 202
Query: 120 LALARQCDLSPPFSLP--------ALHQARARPARASVFRPGTPAGS 158
R+ DL + P +L+ P S PG P GS
Sbjct: 203 PTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNP--CSTATPGPPLGS 247
>gi|224809412 myocyte enhancer factor 2B isoform a [Homo sapiens]
Length = 368
Score = 37.0 bits (84), Expect = 0.008
Identities = 43/167 (25%), Positives = 64/167 (38%), Gaps = 21/167 (12%)
Query: 1 MSLKGHRVSP-QGRPKSGERGRRRLTFCLYGSQKPGSPWLPLFLVQSLLLSNPSPLFSPS 59
+ L G + P +G + GE+ RR + + G P LP + + PSP
Sbjct: 93 IGLDGPELEPDEGPEEPGEKFRRL-------AGEGGDPALPRPRLYPAAPAMPSPDVVYG 145
Query: 60 TPPPAQSDCATLNRTKPNQTKPNQTRPDTPSRGIPERPNWDNRMHLISHATECTSAEMGV 119
PP D + L P Q++P+ RP P G P + + SH T T + +
Sbjct: 146 ALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAG---PPGLVHPLFSPSHLTSKTPPPLYL 202
Query: 120 LALARQCDLSPPFSLP--------ALHQARARPARASVFRPGTPAGS 158
R+ DL + P +L+ P S PG P GS
Sbjct: 203 PTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNP--CSTATPGPPLGS 247
>gi|13489085 ubiquitin-conjugating enzyme E2G 1 [Homo sapiens]
Length = 170
Score = 35.8 bits (81), Expect = 0.018
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 29 YGSQKPGSPWLPLFLVQSLLLSNPSPLFSPSTPPPAQSDCA 69
YG +KP WLP+ V+++++S S L P+ PA D A
Sbjct: 102 YGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAA 142
>gi|116805344 proline rich, lacrimal 1 [Homo sapiens]
Length = 248
Score = 34.7 bits (78), Expect = 0.040
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 7/61 (11%)
Query: 33 KPGSPWLPLFLVQSLLLSNPSPLFSPSTP-------PPAQSDCATLNRTKPNQTKPNQTR 85
KP P +P FL L +SNP P + +T PP + T TKP T + T
Sbjct: 121 KPPFPPIPFFLAIYLPISNPEPQINITTADTTITTNPPTTATATTSTSTKPTMTISSSTV 180
Query: 86 P 86
P
Sbjct: 181 P 181
>gi|46488919 astrotactin 2 isoform c [Homo sapiens]
Length = 1339
Score = 33.9 bits (76), Expect = 0.068
Identities = 26/60 (43%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Query: 1 MSLKGHRVSPQGRPKSGERGRRRLTFCLYGSQKPGSPWLPLFLVQSLLLSNPSPLFSPST 60
M+ G R+SP P SG RGR RL F PG P L L+ LLL P PL + +T
Sbjct: 1 MAAAGARLSPG--PGSGLRGRPRLCF------HPGPPPLLPLLLLFLLLLPPPPLLAGAT 52
>gi|46488917 astrotactin 2 isoform b [Homo sapiens]
Length = 1335
Score = 33.9 bits (76), Expect = 0.068
Identities = 26/60 (43%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Query: 1 MSLKGHRVSPQGRPKSGERGRRRLTFCLYGSQKPGSPWLPLFLVQSLLLSNPSPLFSPST 60
M+ G R+SP P SG RGR RL F PG P L L+ LLL P PL + +T
Sbjct: 1 MAAAGARLSPG--PGSGLRGRPRLCF------HPGPPPLLPLLLLFLLLLPPPPLLAGAT 52
>gi|46488915 astrotactin 2 isoform a [Homo sapiens]
Length = 1288
Score = 33.9 bits (76), Expect = 0.068
Identities = 26/60 (43%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Query: 1 MSLKGHRVSPQGRPKSGERGRRRLTFCLYGSQKPGSPWLPLFLVQSLLLSNPSPLFSPST 60
M+ G R+SP P SG RGR RL F PG P L L+ LLL P PL + +T
Sbjct: 1 MAAAGARLSPG--PGSGLRGRPRLCF------HPGPPPLLPLLLLFLLLLPPPPLLAGAT 52
>gi|4505195 mitogen-activated protein kinase kinase kinase 11 [Homo
sapiens]
Length = 847
Score = 33.9 bits (76), Expect = 0.068
Identities = 40/121 (33%), Positives = 49/121 (40%), Gaps = 30/121 (24%)
Query: 14 PKSGE--RGRRRLTFCLYGSQKPGSPWLPLFLVQSLLLSNPSPLFSPSTPPPAQSDCATL 71
PK GE GRRR S+ + W L + SPL SPSTPP L
Sbjct: 571 PKPGEAQNGRRR-------SRMDEATWY-------LDSDDSSPLGSPSTPP-------AL 609
Query: 72 NRTKPNQTKPNQTRPDTPSRGIP-ERPNWDNRMHLISHATECTSAEMGVLALARQCDLSP 130
N P + P+ P R +P ER + LI A +A + L L R DL P
Sbjct: 610 NGNPPRPS----LEPEEPKRPVPAERGSSSGTPKLIQRALLRGTALLASLGLGR--DLQP 663
Query: 131 P 131
P
Sbjct: 664 P 664
>gi|239752594 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 673
Score = 33.1 bits (74), Expect = 0.12
Identities = 25/88 (28%), Positives = 31/88 (35%), Gaps = 12/88 (13%)
Query: 7 RVSPQGRPKSGERGRRRLTFCLYGSQKPGSPWLPLFLVQSLLLSNPSPLFSPSTPPPAQS 66
R SP G P S + T + + SP + P SP+ PP S
Sbjct: 597 RTSPTGMPSSALLTKMDSTASITRTPPRASP------------TETPPRASPTGTPPRAS 644
Query: 67 DCATLNRTKPNQTKPNQTRPDTPSRGIP 94
T R P T P + TPSR P
Sbjct: 645 PTGTPPRASPTGTPPRASPTGTPSRASP 672
>gi|113426932 PREDICTED: similar to N-ethylmaleimide-sensitive
factor [Homo sapiens]
Length = 563
Score = 31.2 bits (69), Expect = 0.44
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 7/46 (15%)
Query: 128 LSPPFSLPALHQARARPARASV------FRPGTPAGSQQ-RACARS 166
++PP P QA A PARA RPGT A S++ ACAR+
Sbjct: 1 MAPPLCPPRAPQAAAEPARAPCGARTPGTRPGTRASSRRLHACARA 46
>gi|239740963 PREDICTED: similar to N-ethylmaleimide-sensitive
factor [Homo sapiens]
Length = 405
Score = 31.2 bits (69), Expect = 0.44
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 7/46 (15%)
Query: 128 LSPPFSLPALHQARARPARASV------FRPGTPAGSQQ-RACARS 166
++PP P QA A PARA RPGT A S++ ACAR+
Sbjct: 1 MAPPLCPPRAPQAAAEPARAPCGARTPGTRPGTRASSRRLHACARA 46
>gi|31543392 peroxisome proliferator-activated receptor gamma,
coactivator 1 beta [Homo sapiens]
Length = 1023
Score = 31.2 bits (69), Expect = 0.44
Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 17/109 (15%)
Query: 68 CATLNRTKPNQTKPNQTRPDTPSRGIPERPNWDNRMHLISHATECTSAEMGVLA--LARQ 125
C + P +P PS+ + RP W H ++ + AE +L LA+
Sbjct: 298 CLPQRKLPPQTPEPLPKACSNPSQQVRSRP-WSR------HHSKASWAEFSILRELLAQD 350
Query: 126 --CDLSPPFSLPA------LHQARARPARASVFRPGTPAGSQQRACARS 166
CD+S P+ L ++R RP + S PG P+ ++ A S
Sbjct: 351 VLCDVSKPYRLATPVYASLTPRSRPRPPKDSQASPGRPSSVEEVRIAAS 399
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 30.4 bits (67), Expect = 0.76
Identities = 38/137 (27%), Positives = 45/137 (32%), Gaps = 10/137 (7%)
Query: 40 PLFLVQSLLLSNPSP-----LFSPSTPPPAQSDCATLNRTKPNQTKPNQTRPDTPSRG-- 92
PL L L+ P P SP PPPA A + P +T P P P G
Sbjct: 749 PLALGSPRLVRRPPPGPAPAAASPGPPPPASPPGAPASPRAP-RTSPYGGLPAAPLAGPA 807
Query: 93 IPERPNWDNRMHLISHATECTSAEMGVLALARQCDLSPPF--SLPALHQARARPARASVF 150
+P R L + G A R S P PA A P R
Sbjct: 808 LPARRLSRASRPLSASQPSLPHGAPGPAASTRPASSSTPRLGPTPAARAAAPSPDRRDSA 867
Query: 151 RPGTPAGSQQRACARSQ 167
PG G + ARS+
Sbjct: 868 SPGAAGGLDPQDSARSR 884
>gi|31543452 PX domain containing serine/threonine kinase [Homo
sapiens]
Length = 578
Score = 30.4 bits (67), Expect = 0.76
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 53 SPLFSPSTP-PPAQSDCATLNRTKPNQTKPNQTRP----DTPSRGIPERPNWDNRMHLIS 107
SPL SPS+P PP+ S + L P P P + P++ + N +R L+S
Sbjct: 495 SPLTSPSSPTPPSTSGISALPPPPPPPPPPAAPLPPASTEAPAQLSSQAVNGMSRGALLS 554
Query: 108 HATECTSAEMGVLALARQCDLSPP 131
+ + G L A+ CD S P
Sbjct: 555 ---SIQNFQKGTLRKAKTCDHSAP 575
>gi|54860079 nadrin isoform 1 [Homo sapiens]
Length = 881
Score = 30.4 bits (67), Expect = 0.76
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 17/76 (22%)
Query: 32 QKPGSPWLPLFLVQSLLLSNP-SPLFSPSTPPPAQSDCAT-LNRTKPNQ----------- 78
Q PG P P L S+ SP+ +P+ PPP AT L TKPN
Sbjct: 684 QPPGQPSAPSQLSAPRRYSSSLSPIQAPNHPPPQPPTQATPLMHTKPNSQGPPNPMALPS 743
Query: 79 ----TKPNQTRPDTPS 90
+P+ T P TP+
Sbjct: 744 EHGLEQPSHTPPQTPT 759
>gi|54860105 nadrin isoform 2 [Homo sapiens]
Length = 803
Score = 30.4 bits (67), Expect = 0.76
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 17/76 (22%)
Query: 32 QKPGSPWLPLFLVQSLLLSNP-SPLFSPSTPPPAQSDCAT-LNRTKPNQ----------- 78
Q PG P P L S+ SP+ +P+ PPP AT L TKPN
Sbjct: 606 QPPGQPSAPSQLSAPRRYSSSLSPIQAPNHPPPQPPTQATPLMHTKPNSQGPPNPMALPS 665
Query: 79 ----TKPNQTRPDTPS 90
+P+ T P TP+
Sbjct: 666 EHGLEQPSHTPPQTPT 681
>gi|38158015 mastermind-like 3 [Homo sapiens]
Length = 1133
Score = 30.4 bits (67), Expect = 0.76
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 40 PLFLVQSLLLSNPSPLFSPSTPPPAQS--DCATLNRTKPNQTKPNQTRPDTPSRG 92
P F S S PS +P+ P PA S +CA + PNQ P P G
Sbjct: 383 PPFSTVSTATSLPSVASTPAAPNPASSPANCAVQSPQTPNQAHTPGQAPPRPGNG 437
>gi|4557892 lecithin-cholesterol acyltransferase precursor [Homo
sapiens]
Length = 440
Score = 30.0 bits (66), Expect = 0.99
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 19/69 (27%)
Query: 34 PGSPWLPLFLVQSLLLSNPSP------LFSPSTPPPAQSDCATLNRTKP---------NQ 78
PGSPW + L+ LLL +P LF P T P A+ N T+P NQ
Sbjct: 4 PGSPWQWVTLLLGLLLPPAAPFWLLNVLFPPHTTPKAELS----NHTRPVILVPGCLGNQ 59
Query: 79 TKPNQTRPD 87
+ +PD
Sbjct: 60 LEAKLDKPD 68
>gi|71043876 undifferentiated embryonic cell transcription factor 1
[Homo sapiens]
Length = 341
Score = 30.0 bits (66), Expect = 0.99
Identities = 33/114 (28%), Positives = 45/114 (39%), Gaps = 8/114 (7%)
Query: 52 PSPLFSPSTPPPAQSDCATLNRTKPNQTKPNQTRPDTPSR----GIPERPNWDNRMHLIS 107
P PL P+ P PA D RT + RP +PS G+P P R +
Sbjct: 8 PPPLAPPAPPSPASPDPEP--RTPGDAPGTPPRRPASPSALGELGLPVSPGSAQRTPWSA 65
Query: 108 HATECTSAEMGVLALARQCDLSPPFSLPALHQARARPARASVFRPGTPAGSQQR 161
TE + A+ R L +LP + A A+ V R TPA ++R
Sbjct: 66 RETELLLGTLLQPAVWRALLLDRRQALPTYRRVSAALAQQQVRR--TPAQCRRR 117
>gi|169212085 PREDICTED: similar to poly(A) binding protein
interacting protein 1 [Homo sapiens]
Length = 516
Score = 29.6 bits (65), Expect = 1.3
Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 14/71 (19%)
Query: 33 KPGSPWLPLFLVQSLLLSNPSPLFSPSTPPPAQSDC---ATLNRTKPNQTKPNQTR---- 85
+P P P FL P PL P T PP + C A+ R P P QTR
Sbjct: 81 QPPQPKAPGFL-------QPPPLRQPRTTPPPGAQCEVPASPQRPSPPGALPEQTRSLRA 133
Query: 86 PDTPSRGIPER 96
P + IP++
Sbjct: 134 PPSSQDKIPQQ 144
>gi|169207312 PREDICTED: hypothetical protein [Homo sapiens]
Length = 414
Score = 29.6 bits (65), Expect = 1.3
Identities = 27/86 (31%), Positives = 32/86 (37%), Gaps = 5/86 (5%)
Query: 13 RPKSGERGRRRLTFCLYGSQKPGSPWLPLFLVQSLLLSNPSPLFSPSTPPPAQSDCATLN 72
RP SG R R L SQ PG P + + L NPSP P P P + A +
Sbjct: 112 RPVSGVRPPPRGRVGL--SQAPGRPLGACARAKGIRLVNPSP---PRPPEPIPASAAVTS 166
Query: 73 RTKPNQTKPNQTRPDTPSRGIPERPN 98
+ T RG ER N
Sbjct: 167 GLTARGPNTSATPGPQKGRGSAERTN 192
>gi|239752553 PREDICTED: similar to poly(A) binding protein
interacting protein 1 [Homo sapiens]
Length = 457
Score = 29.6 bits (65), Expect = 1.3
Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 14/71 (19%)
Query: 33 KPGSPWLPLFLVQSLLLSNPSPLFSPSTPPPAQSDC---ATLNRTKPNQTKPNQTR---- 85
+P P P FL P PL P T PP + C A+ R P P QTR
Sbjct: 22 QPPQPKAPGFL-------QPPPLRQPRTTPPPGAQCEVPASPQRPSPPGALPEQTRSLRA 74
Query: 86 PDTPSRGIPER 96
P + IP++
Sbjct: 75 PPSSQDKIPQQ 85
>gi|239750650 PREDICTED: hypothetical protein [Homo sapiens]
Length = 414
Score = 29.6 bits (65), Expect = 1.3
Identities = 27/86 (31%), Positives = 32/86 (37%), Gaps = 5/86 (5%)
Query: 13 RPKSGERGRRRLTFCLYGSQKPGSPWLPLFLVQSLLLSNPSPLFSPSTPPPAQSDCATLN 72
RP SG R R L SQ PG P + + L NPSP P P P + A +
Sbjct: 112 RPVSGVRPPPRGRVGL--SQAPGRPLGACARAKGIRLVNPSP---PRPPEPIPASAAVTS 166
Query: 73 RTKPNQTKPNQTRPDTPSRGIPERPN 98
+ T RG ER N
Sbjct: 167 GLTARGPNTSATPGPQKGRGSAERTN 192
>gi|239749931 PREDICTED: FLJ43861 protein [Homo sapiens]
Length = 642
Score = 29.6 bits (65), Expect = 1.3
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 58 PSTPPPAQSDCAT--LNRTKPNQTKPNQTRPDTPSRGIPERPNWDNRMHLISHATECTSA 115
P++P Q D A L+ T P + + + P +P R +P R D + H++ + A
Sbjct: 272 PNSPCAGQVDAAHTYLSPTHPARERWTLSAPASPQRALPGRGEVDTK-HVLGNLLPTHGA 330
Query: 116 EMGVLALARQCDLSPPFSLPALHQARARPA 145
Q S P+SL +H A PA
Sbjct: 331 V--------QAAASQPWSLLGVHSPIATPA 352
>gi|169179021 PREDICTED: hypothetical protein [Homo sapiens]
Length = 176
Score = 29.6 bits (65), Expect = 1.3
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 12/66 (18%)
Query: 32 QKPGSPWLPLFLVQSLLLSNPSPLFSPSTPPPAQSDCATLNRTKPNQTKPNQTRPDTPSR 91
++ GSP LPL S + P S P A R P +T+ +++RP+ P+R
Sbjct: 47 RRSGSPALPL----SAPCGSRGPWLPGSLAPAA--------RANPERTRASRSRPEVPAR 94
Query: 92 GIPERP 97
RP
Sbjct: 95 HYQTRP 100
>gi|89041275 PREDICTED: similar to poly(A) binding protein
interacting protein 1 [Homo sapiens]
Length = 488
Score = 29.6 bits (65), Expect = 1.3
Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 14/71 (19%)
Query: 33 KPGSPWLPLFLVQSLLLSNPSPLFSPSTPPPAQSDC---ATLNRTKPNQTKPNQTR---- 85
+P P P FL P PL P T PP + C A+ R P P QTR
Sbjct: 53 QPPQPKAPGFL-------QPPPLRQPRTTPPPGAQCEVPASPQRPSPPGALPEQTRSLRA 105
Query: 86 PDTPSRGIPER 96
P + IP++
Sbjct: 106 PPSSQDKIPQQ 116
>gi|89037350 PREDICTED: hypothetical protein [Homo sapiens]
Length = 414
Score = 29.6 bits (65), Expect = 1.3
Identities = 27/86 (31%), Positives = 32/86 (37%), Gaps = 5/86 (5%)
Query: 13 RPKSGERGRRRLTFCLYGSQKPGSPWLPLFLVQSLLLSNPSPLFSPSTPPPAQSDCATLN 72
RP SG R R L SQ PG P + + L NPSP P P P + A +
Sbjct: 112 RPVSGVRPPPRGRVGL--SQAPGRPLGACARAKGIRLVNPSP---PRPPEPIPASAAVTS 166
Query: 73 RTKPNQTKPNQTRPDTPSRGIPERPN 98
+ T RG ER N
Sbjct: 167 GLTARGPNTSATPGPQKGRGSAERTN 192
>gi|169181246 PREDICTED: hypothetical protein [Homo sapiens]
Length = 176
Score = 29.6 bits (65), Expect = 1.3
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 12/66 (18%)
Query: 32 QKPGSPWLPLFLVQSLLLSNPSPLFSPSTPPPAQSDCATLNRTKPNQTKPNQTRPDTPSR 91
++ GSP LPL S + P S P A R P +T+ +++RP+ P+R
Sbjct: 47 RRSGSPALPL----SAPCGSRGPWLPGSLAPAA--------RANPERTRASRSRPEVPAR 94
Query: 92 GIPERP 97
RP
Sbjct: 95 HYQTRP 100
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.130 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,632,594
Number of Sequences: 37866
Number of extensions: 475834
Number of successful extensions: 2558
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 106
Number of HSP's that attempted gapping in prelim test: 2228
Number of HSP's gapped (non-prelim): 411
length of query: 169
length of database: 18,247,518
effective HSP length: 95
effective length of query: 74
effective length of database: 14,650,248
effective search space: 1084118352
effective search space used: 1084118352
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.