Guide to the Human Genome
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Name: LOC100290268 Sequence: fasta or formatted (169aa) NCBI GI: 239752439
Description:

PREDICTED: hypothetical protein XP_002348274

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.9         15           1
 C cysteine            3.0          5           1
 D aspartate           2.4          4           1
 E glutamate           2.4          4           1
 F phenylalanine       3.0          5           1
 G glycine             5.9         10           1
 H histidine           2.4          4           1
 I isoleucine          1.2          2           1
 K lysine              3.0          5           1
 L leucine            10.1         17           3
 M methionine          1.8          3           1
 N asparagine          3.6          6           1
 P proline            13.6         23           3
 Q glutamine           6.5         11           2
 R arginine           10.7         18           3
 S serine             11.2         19           1
 T threonine           6.5         11           1
 V valine              2.4          4           1
 W tryptophan          1.2          2           1
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002348274 
LOC100288011          1.000   PREDICTED: hypothetical protein XP_002343897 
LOC729991-MEF2B       0.037   myocyte enhancer factor 2B isoform b 
MEF2B                 0.037   myocyte enhancer factor 2B isoform a 
UBE2G1                0.034   ubiquitin-conjugating enzyme E2G 1 
PROL1                 0.030   proline rich, lacrimal 1 
ASTN2                 0.027   astrotactin 2 isoform c 
ASTN2                 0.027   astrotactin 2 isoform b 
ASTN2                 0.027   astrotactin 2 isoform a 
MAP3K11               0.027   mitogen-activated protein kinase kinase kinase 11 [Ho...
LOC100133756          0.024   PREDICTED: hypothetical protein, partial 
LOC728806             0.018   PREDICTED: similar to N-ethylmaleimide-sensitive fa...
LOC100294345          0.018   PREDICTED: similar to N-ethylmaleimide-sensitive fa...
PPARGC1B              0.018   peroxisome proliferator-activated receptor gamma, co...
HCN2                  0.015   hyperpolarization activated cyclic nucleotide-gated...
PXK                   0.015   PX domain containing serine/threonine kinase 
ARHGAP17              0.015   nadrin isoform 1 
ARHGAP17              0.015   nadrin isoform 2 
MAML3                 0.015   mastermind-like 3 
LCAT                  0.015   lecithin-cholesterol acyltransferase precursor 
UTF1                  0.015   undifferentiated embryonic cell transcription factor...
LOC645139             0.015   PREDICTED: similar to poly(A) binding protein inter...
LOC645602             0.015   PREDICTED: hypothetical protein 
LOC645139             0.015   PREDICTED: similar to poly(A) binding protein inter...
LOC645602             0.015   PREDICTED: hypothetical protein 
LOC399829             0.015   PREDICTED: FLJ43861 protein 
LOC100132701          0.015   PREDICTED: hypothetical protein 
LOC645139             0.015   PREDICTED: similar to poly(A) binding protein intera...
LOC645602             0.015   PREDICTED: hypothetical protein 
LOC100132701          0.015   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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