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Search of human proteins with 239752423
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239752423 PREDICTED: hypothetical protein [Homo sapiens]
(199 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752423 PREDICTED: hypothetical protein [Homo sapiens] 409 e-115
gi|214832074 LIM domain only 2 isoform 1 [Homo sapiens] 33 0.16
gi|239749560 PREDICTED: hypothetical protein XP_002347086 [Homo ... 33 0.21
gi|239743710 PREDICTED: hypothetical protein XP_002342931 [Homo ... 33 0.21
gi|239743072 PREDICTED: hypothetical protein [Homo sapiens] 32 0.27
gi|239508718 PREDICTED: hypothetical protein [Homo sapiens] 32 0.27
gi|20070163 voltage-dependent calcium channel alpha 1G subunit i... 32 0.36
gi|38505292 voltage-dependent calcium channel alpha 1G subunit i... 32 0.36
gi|38505290 voltage-dependent calcium channel alpha 1G subunit i... 32 0.36
gi|38505288 voltage-dependent calcium channel alpha 1G subunit i... 32 0.36
gi|38505286 voltage-dependent calcium channel alpha 1G subunit i... 32 0.36
gi|38505284 voltage-dependent calcium channel alpha 1G subunit i... 32 0.36
gi|38505282 voltage-dependent calcium channel alpha 1G subunit i... 32 0.36
gi|38505280 voltage-dependent calcium channel alpha 1G subunit i... 32 0.36
gi|38505278 voltage-dependent calcium channel alpha 1G subunit i... 32 0.36
gi|38505276 voltage-dependent calcium channel alpha 1G subunit i... 32 0.36
gi|38505274 voltage-dependent calcium channel alpha 1G subunit i... 32 0.36
gi|38505272 voltage-dependent calcium channel alpha 1G subunit i... 32 0.36
gi|38505270 voltage-dependent calcium channel alpha 1G subunit i... 32 0.36
gi|38505268 voltage-dependent calcium channel alpha 1G subunit i... 32 0.36
gi|88759346 GATA zinc finger domain containing 1 [Homo sapiens] 32 0.36
gi|134288906 tripartite motif-containing 67 [Homo sapiens] 32 0.36
gi|239756847 PREDICTED: hypothetical protein [Homo sapiens] 31 0.61
gi|239752392 PREDICTED: hypothetical protein XP_002348220 [Homo ... 31 0.61
gi|239751347 PREDICTED: hypothetical protein XP_002347811 [Homo ... 31 0.61
gi|239746909 PREDICTED: hypothetical protein XP_002343871 [Homo ... 31 0.61
gi|239745846 PREDICTED: hypothetical protein XP_002343564 [Homo ... 31 0.61
gi|28872803 myeloid translocation gene on chromosome 16 isoform ... 31 0.61
gi|31652242 transcription factor 20 isoform 2 [Homo sapiens] 30 1.0
gi|31652244 transcription factor 20 isoform 1 [Homo sapiens] 30 1.0
>gi|239752423 PREDICTED: hypothetical protein [Homo sapiens]
Length = 199
Score = 409 bits (1051), Expect = e-115
Identities = 199/199 (100%), Positives = 199/199 (100%)
Query: 1 MDGDGCGSAGDIAAARGGGRRGGRAPVATLAAASNTADPPQSTRPQARGSPGLEVLVLLP 60
MDGDGCGSAGDIAAARGGGRRGGRAPVATLAAASNTADPPQSTRPQARGSPGLEVLVLLP
Sbjct: 1 MDGDGCGSAGDIAAARGGGRRGGRAPVATLAAASNTADPPQSTRPQARGSPGLEVLVLLP 60
Query: 61 SKDSLHLGQKAPVIIEEGALLLDVGDHPLQGGPCEAGDEERHLQGVAGERVLVHEHVGAR 120
SKDSLHLGQKAPVIIEEGALLLDVGDHPLQGGPCEAGDEERHLQGVAGERVLVHEHVGAR
Sbjct: 61 SKDSLHLGQKAPVIIEEGALLLDVGDHPLQGGPCEAGDEERHLQGVAGERVLVHEHVGAR 120
Query: 121 LHDELRESVGIAVKRLGKGNRVPPATRRRPDRQGQEGLYQLHPTVHRCSSLRWTSMGSTR 180
LHDELRESVGIAVKRLGKGNRVPPATRRRPDRQGQEGLYQLHPTVHRCSSLRWTSMGSTR
Sbjct: 121 LHDELRESVGIAVKRLGKGNRVPPATRRRPDRQGQEGLYQLHPTVHRCSSLRWTSMGSTR 180
Query: 181 LCRGQYRGVAGNACPRRPA 199
LCRGQYRGVAGNACPRRPA
Sbjct: 181 LCRGQYRGVAGNACPRRPA 199
>gi|214832074 LIM domain only 2 isoform 1 [Homo sapiens]
Length = 227
Score = 33.1 bits (74), Expect = 0.16
Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 8 SAGDIAAARGGGRR---GGRAPVATLAAASNTADPPQSTRPQARGSPGLEVLVLLPSKDS 64
S GD GGG R G RAP A A+ A PP T P + S +E L PS++
Sbjct: 28 SGGD--GGGGGGARAPEGVRAPAAGQPRATKGAPPPPGTPPPSPMSSAIERKSLDPSEEP 85
Query: 65 L-HLGQKAPVIIEEGALLLDVGD 86
+ + Q P ++ G ++GD
Sbjct: 86 VDEVLQIPPSLLTCGGCQQNIGD 108
>gi|239749560 PREDICTED: hypothetical protein XP_002347086 [Homo
sapiens]
Length = 443
Score = 32.7 bits (73), Expect = 0.21
Identities = 44/163 (26%), Positives = 58/163 (35%), Gaps = 48/163 (29%)
Query: 7 GSAGDIAAARGGGRRGGRAPVATLAAASNTADPPQSTRPQARGS---PGLEVLVLLPSKD 63
G G A +GG G APV + A +S TA P S + S PG +L +
Sbjct: 91 GRGGGTRAGQGGRGAWGEAPVGSAALSSPTASPGCSEEVHGQRSSFRPGWS--RVLAKEV 148
Query: 64 SLHLGQKAPVI----IEEGALLL----DVGDHPLQGG----------PC----------- 94
L +AP I IEEG +L VG QGG PC
Sbjct: 149 GGELKPEAPSIGAKSIEEGEEVLGAEDSVGQREGQGGWDDAPAVLHHPCVWPPLHSCCLT 208
Query: 95 --------------EAGDEERHLQGVAGERVLVHEHVGARLHD 123
+ G EE+H+ G G + H R+H+
Sbjct: 209 RPVYYPLTRVAAGAQGGAEEQHILGQRGVQKAHGAHPATRIHE 251
>gi|239743710 PREDICTED: hypothetical protein XP_002342931 [Homo
sapiens]
Length = 522
Score = 32.7 bits (73), Expect = 0.21
Identities = 44/163 (26%), Positives = 58/163 (35%), Gaps = 48/163 (29%)
Query: 7 GSAGDIAAARGGGRRGGRAPVATLAAASNTADPPQSTRPQARGS---PGLEVLVLLPSKD 63
G G A +GG G APV + A +S TA P S + S PG +L +
Sbjct: 91 GRGGGTRAGQGGRGAWGEAPVGSAALSSPTASPGCSEEVHGQRSSFRPGWS--RVLAKEV 148
Query: 64 SLHLGQKAPVI----IEEGALLL----DVGDHPLQGG----------PC----------- 94
L +AP I IEEG +L VG QGG PC
Sbjct: 149 GGELKPEAPSIGAKSIEEGEEVLGAEDSVGQREGQGGWDDAPAVLHHPCVWPPLHSCCLT 208
Query: 95 --------------EAGDEERHLQGVAGERVLVHEHVGARLHD 123
+ G EE+H+ G G + H R+H+
Sbjct: 209 RPVYYPLTRVAAGAQGGAEEQHILGQRGVQKAHGAHPATRIHE 251
>gi|239743072 PREDICTED: hypothetical protein [Homo sapiens]
Length = 837
Score = 32.3 bits (72), Expect = 0.27
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 9/56 (16%)
Query: 4 DGCGSA---------GDIAAARGGGRRGGRAPVATLAAASNTADPPQSTRPQARGS 50
DGC +A GD +AR GG R R S T P+++ P+ARGS
Sbjct: 683 DGCSAAFLVLDSARKGDRRSARRGGPRSWRPSARASWVRSTTPRGPEASSPRARGS 738
>gi|239508718 PREDICTED: hypothetical protein [Homo sapiens]
Length = 837
Score = 32.3 bits (72), Expect = 0.27
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 9/56 (16%)
Query: 4 DGCGSA---------GDIAAARGGGRRGGRAPVATLAAASNTADPPQSTRPQARGS 50
DGC +A GD +AR GG R R S T P+++ P+ARGS
Sbjct: 683 DGCSAAFLVLDSARKGDRRSARRGGPRSWRPSARASWVRSTTPRGPEASSPRARGS 738
>gi|20070163 voltage-dependent calcium channel alpha 1G subunit
isoform 1 [Homo sapiens]
Length = 2377
Score = 32.0 bits (71), Expect = 0.36
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 23 GRAPVATLAAASNTADPPQSTRPQARGSPGLEVLVLLPSKDS 64
G P L+ S T DPP+S P+ SPG+ + PS DS
Sbjct: 2299 GSRPKKKLSPPSITIDPPESQGPRTPPSPGICLRRRAPSSDS 2340
>gi|38505292 voltage-dependent calcium channel alpha 1G subunit
isoform 3 [Homo sapiens]
Length = 2343
Score = 32.0 bits (71), Expect = 0.36
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 23 GRAPVATLAAASNTADPPQSTRPQARGSPGLEVLVLLPSKDS 64
G P L+ S T DPP+S P+ SPG+ + PS DS
Sbjct: 2265 GSRPKKKLSPPSITIDPPESQGPRTPPSPGICLRRRAPSSDS 2306
>gi|38505290 voltage-dependent calcium channel alpha 1G subunit
isoform 13 [Homo sapiens]
Length = 2243
Score = 32.0 bits (71), Expect = 0.36
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 23 GRAPVATLAAASNTADPPQSTRPQARGSPGLEVLVLLPSKDS 64
G P L+ S T DPP+S P+ SPG+ + PS DS
Sbjct: 2165 GSRPKKKLSPPSITIDPPESQGPRTPPSPGICLRRRAPSSDS 2206
>gi|38505288 voltage-dependent calcium channel alpha 1G subunit
isoform 12 [Homo sapiens]
Length = 2250
Score = 32.0 bits (71), Expect = 0.36
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 23 GRAPVATLAAASNTADPPQSTRPQARGSPGLEVLVLLPSKDS 64
G P L+ S T DPP+S P+ SPG+ + PS DS
Sbjct: 2172 GSRPKKKLSPPSITIDPPESQGPRTPPSPGICLRRRAPSSDS 2213
>gi|38505286 voltage-dependent calcium channel alpha 1G subunit
isoform 10 [Homo sapiens]
Length = 2266
Score = 32.0 bits (71), Expect = 0.36
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 23 GRAPVATLAAASNTADPPQSTRPQARGSPGLEVLVLLPSKDS 64
G P L+ S T DPP+S P+ SPG+ + PS DS
Sbjct: 2188 GSRPKKKLSPPSITIDPPESQGPRTPPSPGICLRRRAPSSDS 2229
>gi|38505284 voltage-dependent calcium channel alpha 1G subunit
isoform 4 [Homo sapiens]
Length = 2332
Score = 32.0 bits (71), Expect = 0.36
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 23 GRAPVATLAAASNTADPPQSTRPQARGSPGLEVLVLLPSKDS 64
G P L+ S T DPP+S P+ SPG+ + PS DS
Sbjct: 2254 GSRPKKKLSPPSITIDPPESQGPRTPPSPGICLRRRAPSSDS 2295
>gi|38505282 voltage-dependent calcium channel alpha 1G subunit
isoform 8 [Homo sapiens]
Length = 2284
Score = 32.0 bits (71), Expect = 0.36
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 23 GRAPVATLAAASNTADPPQSTRPQARGSPGLEVLVLLPSKDS 64
G P L+ S T DPP+S P+ SPG+ + PS DS
Sbjct: 2206 GSRPKKKLSPPSITIDPPESQGPRTPPSPGICLRRRAPSSDS 2247
>gi|38505280 voltage-dependent calcium channel alpha 1G subunit
isoform 6 [Homo sapiens]
Length = 2306
Score = 32.0 bits (71), Expect = 0.36
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 23 GRAPVATLAAASNTADPPQSTRPQARGSPGLEVLVLLPSKDS 64
G P L+ S T DPP+S P+ SPG+ + PS DS
Sbjct: 2228 GSRPKKKLSPPSITIDPPESQGPRTPPSPGICLRRRAPSSDS 2269
>gi|38505278 voltage-dependent calcium channel alpha 1G subunit
isoform 11 [Homo sapiens]
Length = 2261
Score = 32.0 bits (71), Expect = 0.36
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 23 GRAPVATLAAASNTADPPQSTRPQARGSPGLEVLVLLPSKDS 64
G P L+ S T DPP+S P+ SPG+ + PS DS
Sbjct: 2183 GSRPKKKLSPPSITIDPPESQGPRTPPSPGICLRRRAPSSDS 2224
>gi|38505276 voltage-dependent calcium channel alpha 1G subunit
isoform 5 [Homo sapiens]
Length = 2321
Score = 32.0 bits (71), Expect = 0.36
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 23 GRAPVATLAAASNTADPPQSTRPQARGSPGLEVLVLLPSKDS 64
G P L+ S T DPP+S P+ SPG+ + PS DS
Sbjct: 2243 GSRPKKKLSPPSITIDPPESQGPRTPPSPGICLRRRAPSSDS 2284
>gi|38505274 voltage-dependent calcium channel alpha 1G subunit
isoform 7 [Homo sapiens]
Length = 2298
Score = 32.0 bits (71), Expect = 0.36
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 23 GRAPVATLAAASNTADPPQSTRPQARGSPGLEVLVLLPSKDS 64
G P L+ S T DPP+S P+ SPG+ + PS DS
Sbjct: 2220 GSRPKKKLSPPSITIDPPESQGPRTPPSPGICLRRRAPSSDS 2261
>gi|38505272 voltage-dependent calcium channel alpha 1G subunit
isoform 9 [Homo sapiens]
Length = 2273
Score = 32.0 bits (71), Expect = 0.36
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 23 GRAPVATLAAASNTADPPQSTRPQARGSPGLEVLVLLPSKDS 64
G P L+ S T DPP+S P+ SPG+ + PS DS
Sbjct: 2195 GSRPKKKLSPPSITIDPPESQGPRTPPSPGICLRRRAPSSDS 2236
>gi|38505270 voltage-dependent calcium channel alpha 1G subunit
isoform 2 [Homo sapiens]
Length = 2354
Score = 32.0 bits (71), Expect = 0.36
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 23 GRAPVATLAAASNTADPPQSTRPQARGSPGLEVLVLLPSKDS 64
G P L+ S T DPP+S P+ SPG+ + PS DS
Sbjct: 2276 GSRPKKKLSPPSITIDPPESQGPRTPPSPGICLRRRAPSSDS 2317
>gi|38505268 voltage-dependent calcium channel alpha 1G subunit
isoform 14 [Homo sapiens]
Length = 2171
Score = 32.0 bits (71), Expect = 0.36
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 23 GRAPVATLAAASNTADPPQSTRPQARGSPGLEVLVLLPSKDS 64
G P L+ S T DPP+S P+ SPG+ + PS DS
Sbjct: 2093 GSRPKKKLSPPSITIDPPESQGPRTPPSPGICLRRRAPSSDS 2134
>gi|88759346 GATA zinc finger domain containing 1 [Homo sapiens]
Length = 269
Score = 32.0 bits (71), Expect = 0.36
Identities = 20/40 (50%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 3 GDGCGSAGDIAAARGGGRRGGRAPVATLAAASNTADPPQS 42
G G G AG AA GG GG AT AS +A PPQS
Sbjct: 38 GAGSGGAGSGAAGGTGGSGGGGFGAATF--ASTSATPPQS 75
>gi|134288906 tripartite motif-containing 67 [Homo sapiens]
Length = 783
Score = 32.0 bits (71), Expect = 0.36
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 3 GDGCGSAGDIAA-ARGGGRRGGRAPVATLAAASNTADPPQSTRPQARGSPGLEVLVLLPS 61
G CG AG AA GGG GG L+ S T S P + G+ VL ++P+
Sbjct: 74 GPACGGAGGSAAGGLGGGAGGGGDHADKLSLYSETDSGYGSYTPSLKSPNGVRVLPMVPA 133
>gi|239756847 PREDICTED: hypothetical protein [Homo sapiens]
Length = 84
Score = 31.2 bits (69), Expect = 0.61
Identities = 21/58 (36%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Query: 13 AAARGGGRRGGRAPVATLAAASNTADPPQSTRPQARGS----PGLEVLVLLPSKDSLH 66
AA GGGRR G A S + DP T P+ S PGL L + S H
Sbjct: 27 AAGEGGGRRSGHKSAWQSAGGSESGDPSAPTLPRLHQSAISPPGLRKTTTLLNYCSNH 84
>gi|239752392 PREDICTED: hypothetical protein XP_002348220 [Homo
sapiens]
Length = 189
Score = 31.2 bits (69), Expect = 0.61
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Query: 3 GDGCGSAGDIAAARGGGRR----GGRAPVATLAAASNTADPPQSTRPQARGSPGLEVL 56
G C A ARGGG+R G RAP A + + P+ TRP+ R G V+
Sbjct: 63 GTACPLALGRGGARGGGQRKSRSGARAPGQPAEAGLSAS--PEKTRPEGRAERGRAVV 118
>gi|239751347 PREDICTED: hypothetical protein XP_002347811 [Homo
sapiens]
Length = 84
Score = 31.2 bits (69), Expect = 0.61
Identities = 21/58 (36%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Query: 13 AAARGGGRRGGRAPVATLAAASNTADPPQSTRPQARGS----PGLEVLVLLPSKDSLH 66
AA GGGRR G A S + DP T P+ S PGL L + S H
Sbjct: 27 AAGEGGGRRSGHKSAWQSAGGSESGDPSAPTLPRLHQSAISPPGLRKTTTLLNYCSNH 84
>gi|239746909 PREDICTED: hypothetical protein XP_002343871 [Homo
sapiens]
Length = 189
Score = 31.2 bits (69), Expect = 0.61
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Query: 3 GDGCGSAGDIAAARGGGRR----GGRAPVATLAAASNTADPPQSTRPQARGSPGLEVL 56
G C A ARGGG+R G RAP A + + P+ TRP+ R G V+
Sbjct: 63 GTACPLALGRGGARGGGQRKSRSGARAPGQPAEAGLSAS--PEKTRPEGRAERGRAVV 118
>gi|239745846 PREDICTED: hypothetical protein XP_002343564 [Homo
sapiens]
Length = 84
Score = 31.2 bits (69), Expect = 0.61
Identities = 21/58 (36%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Query: 13 AAARGGGRRGGRAPVATLAAASNTADPPQSTRPQARGS----PGLEVLVLLPSKDSLH 66
AA GGGRR G A S + DP T P+ S PGL L + S H
Sbjct: 27 AAGEGGGRRSGHKSAWQSAGGSESGDPSAPTLPRLHQSAISPPGLRKTTTLLNYCSNH 84
>gi|28872803 myeloid translocation gene on chromosome 16 isoform
MTG16a [Homo sapiens]
Length = 653
Score = 31.2 bits (69), Expect = 0.61
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 8 SAGDIAAARGGGRRGGRAPVATLAAASNTADPPQSTRPQARGSP 51
SAG +A G R+GG APV A AS D P + Q R +P
Sbjct: 36 SAG--CSAPRGPRKGGPAPVDRKAKASAMPDSPAEVKTQPRSTP 77
>gi|31652242 transcription factor 20 isoform 2 [Homo sapiens]
Length = 1938
Score = 30.4 bits (67), Expect = 1.0
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 7 GSAGDIAAARGGGRRGGRAPVATLAAASNTADPPQSTRPQA 47
GS+G + GGGRRG A A +A+ ++ Q R +A
Sbjct: 46 GSSGSSGSGSGGGRRGAAAAAAAMASETSGHQGYQGFRKEA 86
>gi|31652244 transcription factor 20 isoform 1 [Homo sapiens]
Length = 1960
Score = 30.4 bits (67), Expect = 1.0
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 7 GSAGDIAAARGGGRRGGRAPVATLAAASNTADPPQSTRPQA 47
GS+G + GGGRRG A A +A+ ++ Q R +A
Sbjct: 46 GSSGSSGSGSGGGRRGAAAAAAAMASETSGHQGYQGFRKEA 86
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.137 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,471,942
Number of Sequences: 37866
Number of extensions: 485329
Number of successful extensions: 2368
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 2290
Number of HSP's gapped (non-prelim): 123
length of query: 199
length of database: 18,247,518
effective HSP length: 97
effective length of query: 102
effective length of database: 14,574,516
effective search space: 1486600632
effective search space used: 1486600632
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.