Guide to the Human Genome
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Search of human proteins with 239752365

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239752365 PREDICTED: hypothetical protein XP_002348214 [Homo
sapiens]
         (183 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239757849 PREDICTED: hypothetical protein [Homo sapiens]           377   e-105
gi|239752365 PREDICTED: hypothetical protein XP_002348214 [Homo ...   377   e-105
gi|239746879 PREDICTED: hypothetical protein XP_002343873 [Homo ...   377   e-105
gi|21493022 A kinase (PRKA) anchor protein 12 isoform 1 [Homo sa...    31   0.68 
gi|21493024 A kinase (PRKA) anchor protein 12 isoform 2 [Homo sa...    31   0.68 
gi|71043500 beta 1,4-N-acetylgalactosaminyltransferase-transfera...    30   1.2  
gi|239758117 PREDICTED: hypothetical protein [Homo sapiens]            29   2.0  
gi|4501951 adenosine A2b receptor [Homo sapiens]                       29   2.0  
gi|194688142 SEBOX homeobox isoform 1 [Homo sapiens]                   29   2.6  
gi|140972151 SEBOX homeobox isoform 2 [Homo sapiens]                   29   2.6  
gi|24308277 SPARC related modular calcium binding 2 [Homo sapiens]     29   2.6  
gi|169184020 PREDICTED: hypothetical protein [Homo sapiens]            28   4.4  
gi|169179745 PREDICTED: hypothetical protein [Homo sapiens]            28   4.4  
gi|169180144 PREDICTED: hypothetical protein [Homo sapiens]            28   4.4  
gi|90403581 meiosis defective 1 [Homo sapiens]                         28   4.4  
gi|195546915 hypothetical protein LOC125704 [Homo sapiens]             28   5.7  
gi|7706143 armadillo repeat containing, X-linked 1 [Homo sapiens]      28   5.7  
gi|155722994 zinc finger CCCH-type containing 3 [Homo sapiens]         28   5.7  
gi|169173188 PREDICTED: similar to hCG1644362 [Homo sapiens]           27   7.5  
gi|239749350 PREDICTED: similar to hCG1644362 [Homo sapiens]           27   7.5  
gi|239743486 PREDICTED: hypothetical protein LOC645960 [Homo sap...    27   7.5  
gi|126116565 MYC binding protein 2 [Homo sapiens]                      27   7.5  
gi|122937384 transmembrane protein 218 [Homo sapiens]                  27   7.5  
gi|149944593 hypothetical protein LOC23349 [Homo sapiens]              27   7.5  
gi|42734375 ankyrin repeat and sterile alpha motif domain contai...    27   7.5  
gi|4885065 amyloid precursor-like protein 1 isoform 2 precursor ...    27   9.8  
gi|67782338 amyloid precursor-like protein 1 isoform 1 precursor...    27   9.8  
gi|157743257 POU domain, class 6, transcription factor 2 [Homo s...    27   9.8  
gi|8923582 zinc finger protein 446 [Homo sapiens]                      27   9.8  

>gi|239757849 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 183

 Score =  377 bits (968), Expect = e-105
 Identities = 183/183 (100%), Positives = 183/183 (100%)

Query: 1   MWLSGCVGTRARRRDAEPVSSGNGLRAMAVLTKRLALPCSAAPSLLLFLSALFLPQLRLL 60
           MWLSGCVGTRARRRDAEPVSSGNGLRAMAVLTKRLALPCSAAPSLLLFLSALFLPQLRLL
Sbjct: 1   MWLSGCVGTRARRRDAEPVSSGNGLRAMAVLTKRLALPCSAAPSLLLFLSALFLPQLRLL 60

Query: 61  RLYWVLEFSFAGSPHQGFHGEGTRPRAQSHPWRGQEAVCCCVKRPGQPSGSEVKSQSELI 120
           RLYWVLEFSFAGSPHQGFHGEGTRPRAQSHPWRGQEAVCCCVKRPGQPSGSEVKSQSELI
Sbjct: 61  RLYWVLEFSFAGSPHQGFHGEGTRPRAQSHPWRGQEAVCCCVKRPGQPSGSEVKSQSELI 120

Query: 121 HSANACSSSSQEPREEWPRARAQENVVFWPSAVGEALATSGVGLQQLLPQKTCCYSRLAM 180
           HSANACSSSSQEPREEWPRARAQENVVFWPSAVGEALATSGVGLQQLLPQKTCCYSRLAM
Sbjct: 121 HSANACSSSSQEPREEWPRARAQENVVFWPSAVGEALATSGVGLQQLLPQKTCCYSRLAM 180

Query: 181 KSQ 183
           KSQ
Sbjct: 181 KSQ 183


>gi|239752365 PREDICTED: hypothetical protein XP_002348214 [Homo
           sapiens]
          Length = 183

 Score =  377 bits (968), Expect = e-105
 Identities = 183/183 (100%), Positives = 183/183 (100%)

Query: 1   MWLSGCVGTRARRRDAEPVSSGNGLRAMAVLTKRLALPCSAAPSLLLFLSALFLPQLRLL 60
           MWLSGCVGTRARRRDAEPVSSGNGLRAMAVLTKRLALPCSAAPSLLLFLSALFLPQLRLL
Sbjct: 1   MWLSGCVGTRARRRDAEPVSSGNGLRAMAVLTKRLALPCSAAPSLLLFLSALFLPQLRLL 60

Query: 61  RLYWVLEFSFAGSPHQGFHGEGTRPRAQSHPWRGQEAVCCCVKRPGQPSGSEVKSQSELI 120
           RLYWVLEFSFAGSPHQGFHGEGTRPRAQSHPWRGQEAVCCCVKRPGQPSGSEVKSQSELI
Sbjct: 61  RLYWVLEFSFAGSPHQGFHGEGTRPRAQSHPWRGQEAVCCCVKRPGQPSGSEVKSQSELI 120

Query: 121 HSANACSSSSQEPREEWPRARAQENVVFWPSAVGEALATSGVGLQQLLPQKTCCYSRLAM 180
           HSANACSSSSQEPREEWPRARAQENVVFWPSAVGEALATSGVGLQQLLPQKTCCYSRLAM
Sbjct: 121 HSANACSSSSQEPREEWPRARAQENVVFWPSAVGEALATSGVGLQQLLPQKTCCYSRLAM 180

Query: 181 KSQ 183
           KSQ
Sbjct: 181 KSQ 183


>gi|239746879 PREDICTED: hypothetical protein XP_002343873 [Homo
           sapiens]
          Length = 183

 Score =  377 bits (968), Expect = e-105
 Identities = 183/183 (100%), Positives = 183/183 (100%)

Query: 1   MWLSGCVGTRARRRDAEPVSSGNGLRAMAVLTKRLALPCSAAPSLLLFLSALFLPQLRLL 60
           MWLSGCVGTRARRRDAEPVSSGNGLRAMAVLTKRLALPCSAAPSLLLFLSALFLPQLRLL
Sbjct: 1   MWLSGCVGTRARRRDAEPVSSGNGLRAMAVLTKRLALPCSAAPSLLLFLSALFLPQLRLL 60

Query: 61  RLYWVLEFSFAGSPHQGFHGEGTRPRAQSHPWRGQEAVCCCVKRPGQPSGSEVKSQSELI 120
           RLYWVLEFSFAGSPHQGFHGEGTRPRAQSHPWRGQEAVCCCVKRPGQPSGSEVKSQSELI
Sbjct: 61  RLYWVLEFSFAGSPHQGFHGEGTRPRAQSHPWRGQEAVCCCVKRPGQPSGSEVKSQSELI 120

Query: 121 HSANACSSSSQEPREEWPRARAQENVVFWPSAVGEALATSGVGLQQLLPQKTCCYSRLAM 180
           HSANACSSSSQEPREEWPRARAQENVVFWPSAVGEALATSGVGLQQLLPQKTCCYSRLAM
Sbjct: 121 HSANACSSSSQEPREEWPRARAQENVVFWPSAVGEALATSGVGLQQLLPQKTCCYSRLAM 180

Query: 181 KSQ 183
           KSQ
Sbjct: 181 KSQ 183


>gi|21493022 A kinase (PRKA) anchor protein 12 isoform 1 [Homo
           sapiens]
          Length = 1782

 Score = 30.8 bits (68), Expect = 0.68
 Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 13/88 (14%)

Query: 72  GSPHQGFHGEGTRPRAQSHPWRGQEAVCCCVKRPGQPSGSEVKSQSELIHSANACSSSS- 130
           G   +G   +G + R    PW   + +    KR  +PS S+ + + + + SA   S+ S 
Sbjct: 590 GEAEEGATSDGEKKREGVTPWASFKKMVTPKKRVRRPSESDKEDELDKVKSATLSSTEST 649

Query: 131 ------------QEPREEWPRARAQENV 146
                       +EP+ E P+ +   +V
Sbjct: 650 ASEMQEEMKGSVEEPKPEEPKRKVDTSV 677


>gi|21493024 A kinase (PRKA) anchor protein 12 isoform 2 [Homo
           sapiens]
          Length = 1684

 Score = 30.8 bits (68), Expect = 0.68
 Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 13/88 (14%)

Query: 72  GSPHQGFHGEGTRPRAQSHPWRGQEAVCCCVKRPGQPSGSEVKSQSELIHSANACSSSS- 130
           G   +G   +G + R    PW   + +    KR  +PS S+ + + + + SA   S+ S 
Sbjct: 492 GEAEEGATSDGEKKREGVTPWASFKKMVTPKKRVRRPSESDKEDELDKVKSATLSSTEST 551

Query: 131 ------------QEPREEWPRARAQENV 146
                       +EP+ E P+ +   +V
Sbjct: 552 ASEMQEEMKGSVEEPKPEEPKRKVDTSV 579


>gi|71043500 beta 1,4-N-acetylgalactosaminyltransferase-transferase
           3 [Homo sapiens]
          Length = 998

 Score = 30.0 bits (66), Expect = 1.2
 Identities = 13/39 (33%), Positives = 18/39 (46%)

Query: 80  GEGTRPRAQSHPWRGQEAVCCCVKRPGQPSGSEVKSQSE 118
           G+  RP+A    W G+E V     + GQ  G E   + E
Sbjct: 575 GDRMRPQAPGRGWHGEEEVVAAAGQEGQVEGEEEGEEEE 613


>gi|239758117 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 465

 Score = 29.3 bits (64), Expect = 2.0
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 4/65 (6%)

Query: 72  GSPHQGFHGEGTRPRAQSHPWRGQEAVCCCVKRP--GQPSGSEVKSQSELIHSANACSSS 129
           G  H+G  G   +P  ++  WRGQ+A     K+P     +G E + +     +A A + S
Sbjct: 274 GEKHRG--GGDKKPLRKNSRWRGQKAAAAGGKKPQKAAAAGGERRKKLRRQKAAVARAKS 331

Query: 130 SQEPR 134
            ++PR
Sbjct: 332 PKKPR 336


>gi|4501951 adenosine A2b receptor [Homo sapiens]
          Length = 332

 Score = 29.3 bits (64), Expect = 2.0
 Identities = 11/44 (25%), Positives = 21/44 (47%)

Query: 59  LLRLYWVLEFSFAGSPHQGFHGEGTRPRAQSHPWRGQEAVCCCV 102
           ++ + WVL F    +P  G++ + +     + PW G     CC+
Sbjct: 125 VIAVLWVLAFGIGLTPFLGWNSKDSATNNCTEPWDGTTNESCCL 168


>gi|194688142 SEBOX homeobox isoform 1 [Homo sapiens]
          Length = 216

 Score = 28.9 bits (63), Expect = 2.6
 Identities = 24/86 (27%), Positives = 33/86 (38%), Gaps = 14/86 (16%)

Query: 85  PRAQSHPWRGQEAVCCCVKRPGQPSGSEVKSQSELIHSANACSSSSQEPREEWPRARAQE 144
           P     PW  Q         PGQP  S    Q   +   ++C +    PR+ W  A+A  
Sbjct: 123 PDTLQQPWDPQ--------MPGQPPPSSGTPQRTSVCRHSSCPAPGLSPRQGWEGAKA-- 172

Query: 145 NVVFWPSAVGEALATSGVGLQQLLPQ 170
            V  W SA    +  S   L++  PQ
Sbjct: 173 -VAPWGSAGASEVHPS---LERATPQ 194


>gi|140972151 SEBOX homeobox isoform 2 [Homo sapiens]
          Length = 215

 Score = 28.9 bits (63), Expect = 2.6
 Identities = 24/86 (27%), Positives = 33/86 (38%), Gaps = 14/86 (16%)

Query: 85  PRAQSHPWRGQEAVCCCVKRPGQPSGSEVKSQSELIHSANACSSSSQEPREEWPRARAQE 144
           P     PW  Q         PGQP  S    Q   +   ++C +    PR+ W  A+A  
Sbjct: 122 PDTLQQPWDPQ--------MPGQPPPSSGTPQRTSVCRHSSCPAPGLSPRQGWEGAKA-- 171

Query: 145 NVVFWPSAVGEALATSGVGLQQLLPQ 170
            V  W SA    +  S   L++  PQ
Sbjct: 172 -VAPWGSAGASEVHPS---LERATPQ 193


>gi|24308277 SPARC related modular calcium binding 2 [Homo sapiens]
          Length = 457

 Score = 28.9 bits (63), Expect = 2.6
 Identities = 15/55 (27%), Positives = 30/55 (54%)

Query: 117 SELIHSANACSSSSQEPREEWPRARAQENVVFWPSAVGEALATSGVGLQQLLPQK 171
           ++++H+A+  SSSS    E  P    +E VV W   + +  ++  +G +++ P K
Sbjct: 333 TDMVHAASDPSSSSGRLSEPDPSHTLEERVVHWYFKLLDKNSSGDIGKKEIKPFK 387


>gi|169184020 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 132

 Score = 28.1 bits (61), Expect = 4.4
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 83  TRPRA-QSHPWRGQEAVCCCVKRPGQPSGSEVKSQ 116
           +RP A QS P+     VCC   +PG+P+ S ++ +
Sbjct: 77  SRPTALQSPPYSSSPQVCCGSTKPGRPTRSCIQQE 111


>gi|169179745 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 132

 Score = 28.1 bits (61), Expect = 4.4
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 83  TRPRA-QSHPWRGQEAVCCCVKRPGQPSGSEVKSQ 116
           +RP A QS P+     VCC   +PG+P+ S ++ +
Sbjct: 77  SRPTALQSPPYSSSPQVCCGSTKPGRPTRSCIQQE 111


>gi|169180144 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 132

 Score = 28.1 bits (61), Expect = 4.4
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 83  TRPRA-QSHPWRGQEAVCCCVKRPGQPSGSEVKSQ 116
           +RP A QS P+     VCC   +PG+P+ S ++ +
Sbjct: 77  SRPTALQSPPYSSSPQVCCGSTKPGRPTRSCIQQE 111


>gi|90403581 meiosis defective 1 [Homo sapiens]
          Length = 1274

 Score = 28.1 bits (61), Expect = 4.4
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 12/67 (17%)

Query: 11   ARRRDAEPVSSGNGLRAMAVLTKRLALPCSAAPSLLLFLSALFLPQLRLLRLYWVLEFSF 70
            +++R A  + S  GL  M +L K LAL  + A S          P+  LL   W+L  SF
Sbjct: 972  SQKRAAAVLLSSTGL--MELLEKMLALTLAKADS----------PRTALLCSAWLLTASF 1019

Query: 71   AGSPHQG 77
            +   H+G
Sbjct: 1020 SAQQHKG 1026


>gi|195546915 hypothetical protein LOC125704 [Homo sapiens]
          Length = 419

 Score = 27.7 bits (60), Expect = 5.7
 Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 19/76 (25%)

Query: 44  SLLLFLSALFLPQLRLLRLYWVLEFSFAGSPHQGFHGEGTRPRAQSHPWRGQEAVCCCVK 103
           SLL  LS   LP L     ++ +EF  AGSPH                     A+    +
Sbjct: 200 SLLQDLSPHVLPVLGSCGHFYAVEFLAAGSPH-------------------HRALFPLDR 240

Query: 104 RPGQPSGSEVKSQSEL 119
            PG P G + K+ S++
Sbjct: 241 APGAPGGGQAKAISDI 256


>gi|7706143 armadillo repeat containing, X-linked 1 [Homo sapiens]
          Length = 453

 Score = 27.7 bits (60), Expect = 5.7
 Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 9/87 (10%)

Query: 82  GTRPRAQSHPWRGQEAVCCCVKRPGQPSGSEVKSQSELIHSANACSSSSQEPREEWPRAR 141
           G R  A S P  G     C   R G  +G     +S+      A S S++ P   WP  R
Sbjct: 134 GNRTLAPSLPCPGGRGGGCHPTRSGSRAGGRASGKSK----GKARSKSTRAPATTWPVRR 189

Query: 142 AQENVVFWPSAVGEALATSGVGLQQLL 168
            + N   +P  + + L  S   LQ++L
Sbjct: 190 GKFN---FPYKIDDIL--SAPDLQKVL 211


>gi|155722994 zinc finger CCCH-type containing 3 [Homo sapiens]
          Length = 948

 Score = 27.7 bits (60), Expect = 5.7
 Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 18/64 (28%)

Query: 80  GEGTRPRAQSHPWRG---------QEAVCCCVKRPGQPSGSEVKSQSELIHSANACSSSS 130
           GEG  PR Q  P R          ++ +  C K PG+P          ++ S  +   S 
Sbjct: 162 GEGEPPRGQLQPSRPTRARGTCSVEDPLLVCQKEPGKP---------RMVKSVGSVGDSP 212

Query: 131 QEPR 134
           +EPR
Sbjct: 213 REPR 216


>gi|169173188 PREDICTED: similar to hCG1644362 [Homo sapiens]
          Length = 226

 Score = 27.3 bits (59), Expect = 7.5
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 2/32 (6%)

Query: 81  EGTRPRAQSHPWRGQEAVCCCVKRPGQPSGSE 112
           E  RPR  + PW+ Q +  C ++RP +  G +
Sbjct: 128 ELARPRPPTSPWKAQAS--CALQRPSRAQGQD 157


>gi|239749350 PREDICTED: similar to hCG1644362 [Homo sapiens]
          Length = 226

 Score = 27.3 bits (59), Expect = 7.5
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 2/32 (6%)

Query: 81  EGTRPRAQSHPWRGQEAVCCCVKRPGQPSGSE 112
           E  RPR  + PW+ Q +  C ++RP +  G +
Sbjct: 128 ELARPRPPTSPWKAQAS--CALQRPSRAQGQD 157


>gi|239743486 PREDICTED: hypothetical protein LOC645960 [Homo
           sapiens]
          Length = 226

 Score = 27.3 bits (59), Expect = 7.5
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 2/32 (6%)

Query: 81  EGTRPRAQSHPWRGQEAVCCCVKRPGQPSGSE 112
           E  RPR  + PW+ Q +  C ++RP +  G +
Sbjct: 128 ELARPRPPTSPWKAQAS--CALQRPSRAQGQD 157


>gi|126116565 MYC binding protein 2 [Homo sapiens]
          Length = 4640

 Score = 27.3 bits (59), Expect = 7.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 70  FAGSPHQGFHGEGTRPRAQSHPWRGQEAV 98
           F GS  +G  GE T+ R QS P++ ++ +
Sbjct: 567 FTGSASKGEDGESTKSRRQSKPYKPKKII 595


>gi|122937384 transmembrane protein 218 [Homo sapiens]
          Length = 115

 Score = 27.3 bits (59), Expect = 7.5
 Identities = 15/31 (48%), Positives = 21/31 (67%)

Query: 45  LLLFLSALFLPQLRLLRLYWVLEFSFAGSPH 75
           LL FLSA+FL  L L+ +++VLE  +A   H
Sbjct: 83  LLAFLSAIFLGGLFLVLIHYVLEPIYAKPLH 113


>gi|149944593 hypothetical protein LOC23349 [Homo sapiens]
          Length = 400

 Score = 27.3 bits (59), Expect = 7.5
 Identities = 33/117 (28%), Positives = 44/117 (37%), Gaps = 7/117 (5%)

Query: 43  PSLLLFLSALFLPQLR----LLRLYWVLEFSFAGSPHQGFHGEGTRPRAQSHPWRGQEAV 98
           P  L   S L L QLR    LLRL  V E   A +    F   G+         R  +  
Sbjct: 266 PDFLSHESLLLLQQLRPQNSLLRLLTVKERERARA---AFLARGSGSTVSEAECRRAQHS 322

Query: 99  CCCVKRPGQPSGSEVKSQSELIHSANACSSSSQEPREEWPRARAQENVVFWPSAVGE 155
             C + P  PS S   S    I  ++  SSSS+   +       +   V WP+ + E
Sbjct: 323 WFCKRFPEAPSCSVSISHVGPIADSSPASSSSKSQDKTLLPTEQESRFVDWPTFLQE 379


>gi|42734375 ankyrin repeat and sterile alpha motif domain
           containing 3 [Homo sapiens]
          Length = 656

 Score = 27.3 bits (59), Expect = 7.5
 Identities = 18/60 (30%), Positives = 25/60 (41%)

Query: 77  GFHGEGTRPRAQSHPWRGQEAVCCCVKRPGQPSGSEVKSQSELIHSANACSSSSQEPREE 136
           G  G   RPR +  P RG        + P +  G   +  +  I+  +  SSSS   REE
Sbjct: 279 GLGGRAPRPRYEQAPPRGYVTFNSSGENPLEEEGLCCRDVTSPINERDVESSSSSSSREE 338


>gi|4885065 amyloid precursor-like protein 1 isoform 2 precursor
           [Homo sapiens]
          Length = 650

 Score = 26.9 bits (58), Expect = 9.8
 Identities = 17/58 (29%), Positives = 23/58 (39%)

Query: 79  HGEGTRPRAQSHPWRGQEAVCCCVKRPGQPSGSEVKSQSELIHSANACSSSSQEPREE 136
           HG G      S  +RG E VCC       PSG+ V   S       +    +++  EE
Sbjct: 189 HGSGMLLPCGSDRFRGVEYVCCPPPGTPDPSGTAVGDPSTRSWPPGSRVEGAEDEEEE 246


>gi|67782338 amyloid precursor-like protein 1 isoform 1 precursor
           [Homo sapiens]
          Length = 651

 Score = 26.9 bits (58), Expect = 9.8
 Identities = 17/58 (29%), Positives = 23/58 (39%)

Query: 79  HGEGTRPRAQSHPWRGQEAVCCCVKRPGQPSGSEVKSQSELIHSANACSSSSQEPREE 136
           HG G      S  +RG E VCC       PSG+ V   S       +    +++  EE
Sbjct: 189 HGSGMLLPCGSDRFRGVEYVCCPPPGTPDPSGTAVGDPSTRSWPPGSRVEGAEDEEEE 246


>gi|157743257 POU domain, class 6, transcription factor 2 [Homo
           sapiens]
          Length = 691

 Score = 26.9 bits (58), Expect = 9.8
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 104 RPGQPSGSEVKSQSELIHSANACSSSSQEP 133
           +P Q S  +  SQ  L+H A++ +S SQ P
Sbjct: 414 QPSQTSVGQAASQGNLLHLAHSQASMSQSP 443


>gi|8923582 zinc finger protein 446 [Homo sapiens]
          Length = 450

 Score = 26.9 bits (58), Expect = 9.8
 Identities = 26/110 (23%), Positives = 38/110 (34%), Gaps = 11/110 (10%)

Query: 72  GSPHQGFHGEGTRPRAQSHPWRGQEAVCCCVKRPGQPSGSEVKSQS--------ELIHSA 123
           GSPH     E      Q     G   + C VK      G EV   S        E  H  
Sbjct: 136 GSPHPSGTVESPGEGPQDTRIEGSVQLSCSVKEEPNVDGQEVAPSSPPLAAQSPEGNHGH 195

Query: 124 NACSSSSQEP---REEWPRARAQENVVFWPSAVGEALATSGVGLQQLLPQ 170
              +S+S  P   +EEW      +  ++W + + +      +GL    P+
Sbjct: 196 QEPASTSFHPPRIQEEWGLLDRSQKELYWDAMLEKYGTVVSLGLPPHQPE 245


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.131    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,437,333
Number of Sequences: 37866
Number of extensions: 347169
Number of successful extensions: 1054
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1038
Number of HSP's gapped (non-prelim): 31
length of query: 183
length of database: 18,247,518
effective HSP length: 96
effective length of query: 87
effective length of database: 14,612,382
effective search space: 1271277234
effective search space used: 1271277234
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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