Guide to the Human Genome
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Name: LOC100134320 Sequence: fasta or formatted (93aa) NCBI GI: 239757778
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.8         10           1
 C cysteine            1.1          1           1
 D aspartate           0.0          0           0
 E glutamate           0.0          0           0
 F phenylalanine       1.1          1           1
 G glycine            12.9         12           2
 H histidine           0.0          0           0
 I isoleucine          2.2          2           1
 K lysine              1.1          1           1
 L leucine             2.2          2           1
 M methionine          1.1          1           1
 N asparagine          2.2          2           1
 P proline            12.9         12           2
 Q glutamine           1.1          1           1
 R arginine           12.9         12           3
 S serine             14.0         13           1
 T threonine          22.6         21           2
 V valine              1.1          1           1
 W tryptophan          1.1          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100294420          0.120   PREDICTED: similar to mucin 2 
MUC2                  0.102   mucin 2 precursor 
MAPT                  0.102   microtubule-associated protein tau isoform 6 
MAPT                  0.090   microtubule-associated protein tau isoform 2 
MAPT                  0.090   microtubule-associated protein tau isoform 4 
MAPT                  0.090   microtubule-associated protein tau isoform 3 
MAPT                  0.090   microtubule-associated protein tau isoform 1 
MAPT                  0.090   microtubule-associated protein tau isoform 5 
FOXA3                 0.084   forkhead box A3 
MUC5AC                0.084   mucin 5AC 
MUC5B                 0.084   mucin 5, subtype B, tracheobronchial 
LOC100131251          0.078   PREDICTED: hypothetical protein 
LOC100131251          0.078   PREDICTED: hypothetical protein 
LOC100293770          0.072   PREDICTED: hypothetical protein 
LOC100133756          0.072   PREDICTED: hypothetical protein, partial 
LOC100288201          0.072   PREDICTED: hypothetical protein 
LOC100288201          0.072   PREDICTED: hypothetical protein XP_002343260 
LOC100134147          0.066   PREDICTED: hypothetical protein 
LOC100291523          0.066   PREDICTED: hypothetical protein XP_002348200 
LOC100131514          0.066   PREDICTED: similar to intestinal mucin MUC3B 
LOC100288052          0.066   PREDICTED: hypothetical protein XP_002344236 
MUC6                  0.060   mucin 6, gastric 
LOC100292958          0.060   PREDICTED: hypothetical protein 
LOC100288311          0.060   PREDICTED: hypothetical protein 
LOC100288311          0.060   PREDICTED: hypothetical protein XP_002342972 
IQSEC2                0.060   IQ motif and Sec7 domain 2 isoform1 
CLASP1                0.060   CLIP-associating protein 1 isoform 2 
LOC100132635          0.060   PREDICTED: similar to mucin 5, partial 
CIC                   0.060   capicua homolog 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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