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Search of human proteins with 239752299
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239752299 PREDICTED: hypothetical protein [Homo sapiens]
(61 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752299 PREDICTED: hypothetical protein [Homo sapiens] 135 9e-33
gi|239757780 PREDICTED: hypothetical protein [Homo sapiens] 120 2e-28
gi|239746810 PREDICTED: hypothetical protein [Homo sapiens] 120 2e-28
gi|21703710 scotin [Homo sapiens] 114 2e-26
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re... 38 0.002
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re... 38 0.002
gi|148237270 hypermethylated in cancer 1 isoform 2 [Homo sapiens] 37 0.003
gi|61676186 hypermethylated in cancer 1 isoform 1 [Homo sapiens] 37 0.003
gi|17402900 far upstream element-binding protein [Homo sapiens] 37 0.003
gi|4557317 annexin A11 [Homo sapiens] 36 0.006
gi|22165433 annexin A11 [Homo sapiens] 36 0.006
gi|22165431 annexin A11 [Homo sapiens] 36 0.006
gi|21389357 MAPK-interacting and spindle-stabilizing protein [Ho... 35 0.010
gi|148762978 similar to CG15216-PA [Homo sapiens] 35 0.010
gi|55741677 SET domain containing 1A [Homo sapiens] 35 0.017
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 35 0.017
gi|33286446 opioid growth factor receptor [Homo sapiens] 34 0.022
gi|42544130 splicing factor 1 isoform 1 [Homo sapiens] 34 0.022
gi|130492454 zinc finger RNA binding protein 2 isoform 1 [Homo s... 34 0.022
gi|10092601 eukaryotic translation initiation factor 4 gamma, 3 ... 34 0.022
gi|153792074 proline rich 12 [Homo sapiens] 34 0.022
gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens] 34 0.029
gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens] 34 0.029
gi|210032580 SET domain containing 1B [Homo sapiens] 33 0.038
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 33 0.038
gi|33286442 BCL6 co-repressor-like 1 [Homo sapiens] 33 0.038
gi|5031681 embryonal Fyn-associated substrate isoform 1 [Homo sa... 33 0.038
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 33 0.049
gi|209180481 Cas-Br-M (murine) ecotropic retroviral transforming... 33 0.049
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 33 0.049
>gi|239752299 PREDICTED: hypothetical protein [Homo sapiens]
Length = 61
Score = 135 bits (339), Expect = 9e-33
Identities = 61/61 (100%), Positives = 61/61 (100%)
Query: 1 MPPKPGMPAASYPVQYPSPYPAQPXGPPAYFETLAGGAATPYPTSQPPSNPDYMDAPKAA 60
MPPKPGMPAASYPVQYPSPYPAQP GPPAYFETLAGGAATPYPTSQPPSNPDYMDAPKAA
Sbjct: 1 MPPKPGMPAASYPVQYPSPYPAQPXGPPAYFETLAGGAATPYPTSQPPSNPDYMDAPKAA 60
Query: 61 P 61
P
Sbjct: 61 P 61
>gi|239757780 PREDICTED: hypothetical protein [Homo sapiens]
Length = 55
Score = 120 bits (302), Expect = 2e-28
Identities = 54/55 (98%), Positives = 54/55 (98%)
Query: 7 MPAASYPVQYPSPYPAQPXGPPAYFETLAGGAATPYPTSQPPSNPDYMDAPKAAP 61
MPAASYPVQYPSPYPAQP GPPAYFETLAGGAATPYPTSQPPSNPDYMDAPKAAP
Sbjct: 1 MPAASYPVQYPSPYPAQPMGPPAYFETLAGGAATPYPTSQPPSNPDYMDAPKAAP 55
>gi|239746810 PREDICTED: hypothetical protein [Homo sapiens]
Length = 55
Score = 120 bits (302), Expect = 2e-28
Identities = 54/55 (98%), Positives = 54/55 (98%)
Query: 7 MPAASYPVQYPSPYPAQPXGPPAYFETLAGGAATPYPTSQPPSNPDYMDAPKAAP 61
MPAASYPVQYPSPYPAQP GPPAYFETLAGGAATPYPTSQPPSNPDYMDAPKAAP
Sbjct: 1 MPAASYPVQYPSPYPAQPMGPPAYFETLAGGAATPYPTSQPPSNPDYMDAPKAAP 55
>gi|21703710 scotin [Homo sapiens]
Length = 240
Score = 114 bits (284), Expect = 2e-26
Identities = 50/60 (83%), Positives = 52/60 (86%)
Query: 1 MPPKPGMPAASYPVQYPSPYPAQPXGPPAYFETLAGGAATPYPTSQPPSNPDYMDAPKAA 60
MPP+PGMPAA YP+QYP PYPAQP GPPAY ETLAGGAA PYP SQPP NP YMDAPKAA
Sbjct: 180 MPPQPGMPAAPYPMQYPPPYPAQPMGPPAYHETLAGGAAAPYPASQPPYNPAYMDAPKAA 239
>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform a [Homo sapiens]
Length = 1590
Score = 38.1 bits (87), Expect = 0.002
Identities = 24/71 (33%), Positives = 30/71 (42%), Gaps = 11/71 (15%)
Query: 2 PPKPGMPAASYPVQ-----YPSPYPAQPXGPPAYFETLAGGAATP--YPTSQP----PSN 50
PP PGM P+ Y SP+P+ P ++GG TP P SQP P +
Sbjct: 101 PPHPGMGPPQSPMDQHSQGYMSPHPSPLGAPEHVSSPMSGGGPTPPQMPPSQPGALIPGD 160
Query: 51 PDYMDAPKAAP 61
P M P P
Sbjct: 161 PQAMSQPNRGP 171
>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform b [Homo sapiens]
Length = 1572
Score = 38.1 bits (87), Expect = 0.002
Identities = 24/71 (33%), Positives = 30/71 (42%), Gaps = 11/71 (15%)
Query: 2 PPKPGMPAASYPVQ-----YPSPYPAQPXGPPAYFETLAGGAATP--YPTSQP----PSN 50
PP PGM P+ Y SP+P+ P ++GG TP P SQP P +
Sbjct: 101 PPHPGMGPPQSPMDQHSQGYMSPHPSPLGAPEHVSSPMSGGGPTPPQMPPSQPGALIPGD 160
Query: 51 PDYMDAPKAAP 61
P M P P
Sbjct: 161 PQAMSQPNRGP 171
>gi|148237270 hypermethylated in cancer 1 isoform 2 [Homo sapiens]
Length = 733
Score = 37.4 bits (85), Expect = 0.003
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 12/62 (19%)
Query: 1 MPPKPGMPAASYPVQYPSPYPAQPXGPPAYFETL----------AGGAATPYPTSQPPSN 50
+PP+P P ++ P Y P A P PP F+ L GG+ +P P +PP
Sbjct: 264 LPPRPDSPPSAGPAAYKEPPLALPSLPPLPFQKLEEAAPPSDPFRGGSGSPGP--EPPGR 321
Query: 51 PD 52
PD
Sbjct: 322 PD 323
>gi|61676186 hypermethylated in cancer 1 isoform 1 [Homo sapiens]
Length = 714
Score = 37.4 bits (85), Expect = 0.003
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 12/62 (19%)
Query: 1 MPPKPGMPAASYPVQYPSPYPAQPXGPPAYFETL----------AGGAATPYPTSQPPSN 50
+PP+P P ++ P Y P A P PP F+ L GG+ +P P +PP
Sbjct: 245 LPPRPDSPPSAGPAAYKEPPLALPSLPPLPFQKLEEAAPPSDPFRGGSGSPGP--EPPGR 302
Query: 51 PD 52
PD
Sbjct: 303 PD 304
>gi|17402900 far upstream element-binding protein [Homo sapiens]
Length = 644
Score = 37.0 bits (84), Expect = 0.003
Identities = 21/52 (40%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 2 PPKPGMPAASY-PVQY-PSPYPAQPXGPPAYFETLAGGAATPYPTSQPPSNP 51
PP PG P Y P Y P P P GPPA + G A P+ Q P +P
Sbjct: 474 PPGPGTPMGPYNPAPYNPGPPGPAPHGPPAPYAPQGWGNAYPHWQQQAPPDP 525
>gi|4557317 annexin A11 [Homo sapiens]
Length = 505
Score = 36.2 bits (82), Expect = 0.006
Identities = 22/58 (37%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 5 PGMPAASYPVQYPSPYPAQPXGPPAYFETLAGGAATP-YPTSQPPSNPDYMDAPKAAP 61
PG P +YP Q P P P Q P+Y G TP P +Q S DAP P
Sbjct: 145 PGQPPVTYPGQPPVPLPGQQQPVPSYPGYPGSGTVTPAVPPTQFGSRGTITDAPGFDP 202
Score = 30.0 bits (66), Expect = 0.42
Identities = 22/67 (32%), Positives = 24/67 (35%), Gaps = 13/67 (19%)
Query: 2 PPKPGMPAASYPV-----QYPSPYPAQPXGPPAYFETLAGGAATPYPTSQP--PSNPDYM 54
PP PG P P+ Q P YP QP T G P P Q PS P Y
Sbjct: 121 PPYPGAPVPGQPMPPPGQQPPGAYPGQPP------VTYPGQPPVPLPGQQQPVPSYPGYP 174
Query: 55 DAPKAAP 61
+ P
Sbjct: 175 GSGTVTP 181
Score = 28.1 bits (61), Expect = 1.6
Identities = 20/45 (44%), Positives = 20/45 (44%), Gaps = 9/45 (20%)
Query: 11 SYPVQYPSPY---PAQPXGPPAYFETLAGGAATPYPTSQPPSNPD 52
SYP P P PA P G P GGAA P P S PP D
Sbjct: 2 SYPGYPPPPGGYPPAAPGGGPW------GGAAYPPPPSMPPIGLD 40
>gi|22165433 annexin A11 [Homo sapiens]
Length = 505
Score = 36.2 bits (82), Expect = 0.006
Identities = 22/58 (37%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 5 PGMPAASYPVQYPSPYPAQPXGPPAYFETLAGGAATP-YPTSQPPSNPDYMDAPKAAP 61
PG P +YP Q P P P Q P+Y G TP P +Q S DAP P
Sbjct: 145 PGQPPVTYPGQPPVPLPGQQQPVPSYPGYPGSGTVTPAVPPTQFGSRGTITDAPGFDP 202
Score = 30.0 bits (66), Expect = 0.42
Identities = 22/67 (32%), Positives = 24/67 (35%), Gaps = 13/67 (19%)
Query: 2 PPKPGMPAASYPV-----QYPSPYPAQPXGPPAYFETLAGGAATPYPTSQP--PSNPDYM 54
PP PG P P+ Q P YP QP T G P P Q PS P Y
Sbjct: 121 PPYPGAPVPGQPMPPPGQQPPGAYPGQPP------VTYPGQPPVPLPGQQQPVPSYPGYP 174
Query: 55 DAPKAAP 61
+ P
Sbjct: 175 GSGTVTP 181
Score = 28.1 bits (61), Expect = 1.6
Identities = 20/45 (44%), Positives = 20/45 (44%), Gaps = 9/45 (20%)
Query: 11 SYPVQYPSPY---PAQPXGPPAYFETLAGGAATPYPTSQPPSNPD 52
SYP P P PA P G P GGAA P P S PP D
Sbjct: 2 SYPGYPPPPGGYPPAAPGGGPW------GGAAYPPPPSMPPIGLD 40
>gi|22165431 annexin A11 [Homo sapiens]
Length = 505
Score = 36.2 bits (82), Expect = 0.006
Identities = 22/58 (37%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 5 PGMPAASYPVQYPSPYPAQPXGPPAYFETLAGGAATP-YPTSQPPSNPDYMDAPKAAP 61
PG P +YP Q P P P Q P+Y G TP P +Q S DAP P
Sbjct: 145 PGQPPVTYPGQPPVPLPGQQQPVPSYPGYPGSGTVTPAVPPTQFGSRGTITDAPGFDP 202
Score = 30.0 bits (66), Expect = 0.42
Identities = 22/67 (32%), Positives = 24/67 (35%), Gaps = 13/67 (19%)
Query: 2 PPKPGMPAASYPV-----QYPSPYPAQPXGPPAYFETLAGGAATPYPTSQP--PSNPDYM 54
PP PG P P+ Q P YP QP T G P P Q PS P Y
Sbjct: 121 PPYPGAPVPGQPMPPPGQQPPGAYPGQPP------VTYPGQPPVPLPGQQQPVPSYPGYP 174
Query: 55 DAPKAAP 61
+ P
Sbjct: 175 GSGTVTP 181
Score = 28.1 bits (61), Expect = 1.6
Identities = 20/45 (44%), Positives = 20/45 (44%), Gaps = 9/45 (20%)
Query: 11 SYPVQYPSPY---PAQPXGPPAYFETLAGGAATPYPTSQPPSNPD 52
SYP P P PA P G P GGAA P P S PP D
Sbjct: 2 SYPGYPPPPGGYPPAAPGGGPW------GGAAYPPPPSMPPIGLD 40
>gi|21389357 MAPK-interacting and spindle-stabilizing protein [Homo
sapiens]
Length = 245
Score = 35.4 bits (80), Expect = 0.010
Identities = 25/63 (39%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Query: 2 PPKPGMPAASYPVQYPSPYPAQPXGPPAYFETLAGGAATP--YPTSQPPSNP-DYMDAPK 58
PP P P A+ PV + + P GPPA + G TP YPT PSNP P
Sbjct: 177 PPPPQAPGAAPPVPWGT-VPPGAWGPPAPYPAPTGSYPTPGLYPT---PSNPFQVPSGPS 232
Query: 59 AAP 61
AP
Sbjct: 233 GAP 235
Score = 29.3 bits (64), Expect = 0.71
Identities = 20/71 (28%), Positives = 26/71 (36%), Gaps = 12/71 (16%)
Query: 3 PKPGMPAASYPVQYPSPYPAQPXGPPAYFETLAGG------------AATPYPTSQPPSN 50
P P MP P Y +P GP + +++ G PYP+ P
Sbjct: 117 PTPNMPFPELPRPYGAPTDPAAAGPLGPWGSMSSGPWAPGMGGQYPTPNMPYPSPGPYPA 176
Query: 51 PDYMDAPKAAP 61
P AP AAP
Sbjct: 177 PPPPQAPGAAP 187
Score = 27.7 bits (60), Expect = 2.1
Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Query: 4 KPGMPAASYPVQYPSPYPAQPXGPPAYFETLAGGAATPY---PTSQPPSNP 51
KPG P +P P P+ P P+ A + P+ PT PS P
Sbjct: 26 KPGQPPQGWPGSNPWNNPSAPSSVPSGLPPSATPSTVPFGPAPTGMYPSVP 76
>gi|148762978 similar to CG15216-PA [Homo sapiens]
Length = 976
Score = 35.4 bits (80), Expect = 0.010
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 8 PAASYPVQYPSPYPAQPX-GP-PAYFETLAGGAATPYPTSQPPSNPDYMDAPKA 59
P ++ YP PYP++ GP P G +P +PPS Y +AP+A
Sbjct: 298 PGPTFDAYYPRPYPSEELSGPSPRRMGGYYAGEVRTFPIQEPPSRSYYGEAPRA 351
>gi|55741677 SET domain containing 1A [Homo sapiens]
Length = 1707
Score = 34.7 bits (78), Expect = 0.017
Identities = 22/58 (37%), Positives = 24/58 (41%), Gaps = 8/58 (13%)
Query: 8 PAASYPVQYPSPYPAQPXGPPAYFETLAGGAATPYPTSQP----PSNPDYMDAPKAAP 61
P A P Q P P P P PP Y +L G YP QP P PD P+ P
Sbjct: 595 PPAPTPPQQPPPPPPPPPPPPPYLASLPLG----YPPHQPAYLLPPRPDGPPPPEYPP 648
Score = 28.5 bits (62), Expect = 1.2
Identities = 15/47 (31%), Positives = 18/47 (38%)
Query: 2 PPKPGMPAASYPVQYPSPYPAQPXGPPAYFETLAGGAATPYPTSQPP 48
P +P P P P P P GPPA ++P P PP
Sbjct: 1115 PARPAGPTEESPPSAPLRPPEPPAGPPAPAPRPDERPSSPIPLLPPP 1161
Score = 27.7 bits (60), Expect = 2.1
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 13/60 (21%)
Query: 2 PPKPGMPAASYPVQYPSPYPA-----QPXGPPAYFETLAGGAATPYPTSQPPSNPDYMDA 56
PP P AS P+ YP PA +P GPP P P PP D++++
Sbjct: 611 PPPPPPYLASLPLGYPPHQPAYLLPPRPDGPPP--------PEYPPPPPPPPHIYDFVNS 662
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 34.7 bits (78), Expect = 0.017
Identities = 18/40 (45%), Positives = 18/40 (45%)
Query: 2 PPKPGMPAASYPVQYPSPYPAQPXGPPAYFETLAGGAATP 41
PP P P P Q P P QP PP AGGAA P
Sbjct: 209 PPLPPPPQPPAPPQQQQPPPPQPQPPPEGGAVRAGGAARP 248
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/45 (40%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 17 PSPYPAQPXGPPAYFETLAGGAATPYPTSQPPSNPDYMDAPKAAP 61
P+P P P G PA A A P P PP P AP AP
Sbjct: 109 PAP-PRAPRGAPA---AAAAAAPPPTPAPPPPPAPVAAAAPARAP 149
Score = 27.3 bits (59), Expect = 2.7
Identities = 26/71 (36%), Positives = 31/71 (43%), Gaps = 19/71 (26%)
Query: 2 PPKPGMPAASYPVQY-----------PSPYPAQPXGPPAYFETLAGGAATPYPTSQPPSN 50
PP P AA+ P + PSP PAQP GP A + A AA P + PP+
Sbjct: 134 PPPPAPVAAAAPARAPRAAAAAATAPPSPGPAQP-GPRA--QRAAPLAAPPPAPAAPPA- 189
Query: 51 PDYMDAPKAAP 61
AP A P
Sbjct: 190 ----VAPPAGP 196
Score = 26.9 bits (58), Expect = 3.5
Identities = 22/66 (33%), Positives = 26/66 (39%), Gaps = 7/66 (10%)
Query: 3 PKPGMPAASYPVQYPSPYPAQPXGP-----PAYFETLAGGAATPYPTSQP--PSNPDYMD 55
P+ AA+ P+P P P P PA A AAT P+ P P
Sbjct: 115 PRGAPAAAAAAAPPPTPAPPPPPAPVAAAAPARAPRAAAAAATAPPSPGPAQPGPRAQRA 174
Query: 56 APKAAP 61
AP AAP
Sbjct: 175 APLAAP 180
>gi|33286446 opioid growth factor receptor [Homo sapiens]
Length = 677
Score = 34.3 bits (77), Expect = 0.022
Identities = 17/59 (28%), Positives = 25/59 (42%)
Query: 3 PKPGMPAASYPVQYPSPYPAQPXGPPAYFETLAGGAATPYPTSQPPSNPDYMDAPKAAP 61
P+P PA P + PS P PA E + TP P+ P+ + ++P P
Sbjct: 544 PRPAGPAGDEPAESPSETPGPRPAGPAGDEPAESPSETPGPSPAGPTRDEPAESPSETP 602
Score = 32.7 bits (73), Expect = 0.064
Identities = 17/59 (28%), Positives = 23/59 (38%)
Query: 3 PKPGMPAASYPVQYPSPYPAQPXGPPAYFETLAGGAATPYPTSQPPSNPDYMDAPKAAP 61
P P PA P + PS P PA E + TP P P+ + ++P P
Sbjct: 524 PSPAGPAGDEPAESPSETPGPRPAGPAGDEPAESPSETPGPRPAGPAGDEPAESPSETP 582
Score = 32.7 bits (73), Expect = 0.064
Identities = 16/59 (27%), Positives = 23/59 (38%)
Query: 3 PKPGMPAASYPVQYPSPYPAQPXGPPAYFETLAGGAATPYPTSQPPSNPDYMDAPKAAP 61
P+P PA P + PS P P E + TP P P+ + ++P P
Sbjct: 564 PRPAGPAGDEPAESPSETPGPSPAGPTRDEPAESPSETPGPRPAGPAGDEPAESPSETP 622
Score = 32.0 bits (71), Expect = 0.11
Identities = 18/58 (31%), Positives = 25/58 (43%)
Query: 3 PKPGMPAASYPVQYPSPYPAQPXGPPAYFETLAGGAATPYPTSQPPSNPDYMDAPKAA 60
P+P PA P + PS P PA E + TP P+ P+ + A +AA
Sbjct: 604 PRPAGPAGDEPAESPSETPGPRPAGPAGDEPAESPSETPGPSPAGPTRDEPAKAGEAA 661
Score = 30.8 bits (68), Expect = 0.24
Identities = 16/59 (27%), Positives = 22/59 (37%)
Query: 3 PKPGMPAASYPVQYPSPYPAQPXGPPAYFETLAGGAATPYPTSQPPSNPDYMDAPKAAP 61
P P P P + PS P PA E + TP P P+ + ++P P
Sbjct: 584 PSPAGPTRDEPAESPSETPGPRPAGPAGDEPAESPSETPGPRPAGPAGDEPAESPSETP 642
>gi|42544130 splicing factor 1 isoform 1 [Homo sapiens]
Length = 639
Score = 34.3 bits (77), Expect = 0.022
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 2 PPKPGMPAASYPVQYPSPYPAQPXGPPAYFETLAG-GAATPYPTSQPPSNP 51
PP P P S + Y P P P P+ F T+ G G A P PP+ P
Sbjct: 583 PPPPPPPPGSAGMMYAPPPPPPPPMDPSNFVTMMGMGVAGMPPFGMPPAPP 633
>gi|130492454 zinc finger RNA binding protein 2 isoform 1 [Homo
sapiens]
Length = 939
Score = 34.3 bits (77), Expect = 0.022
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Query: 2 PPKPGMPAASYPVQYPSPYPAQPXGPPAYFETL------AGGAATPYPTSQPPSNPDYMD 55
P P A+ Y P PAQP PP + L AG ++P S+PP P +
Sbjct: 201 PSYPNYDASVYSAASPFYPPAQPPPPPGPPQQLPPPPAPAGSGSSPRADSKPPL-PSKLP 259
Query: 56 APKAAP 61
PKA P
Sbjct: 260 RPKAGP 265
>gi|10092601 eukaryotic translation initiation factor 4 gamma, 3
[Homo sapiens]
Length = 1585
Score = 34.3 bits (77), Expect = 0.022
Identities = 24/60 (40%), Positives = 25/60 (41%), Gaps = 8/60 (13%)
Query: 2 PPKPGMPAASYPVQYPSPYPAQPXGPPAYFETLAGGAATPYPTSQPPSNPDYMDAPKAAP 61
PP G P YPVQ P P P P P F G TP+ PS P Y AP P
Sbjct: 76 PPYVG-PPQQYPVQPPGPGPFYPGPGPGDFPNAYG---TPF----YPSQPVYQSAPIIVP 127
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 34.3 bits (77), Expect = 0.022
Identities = 21/62 (33%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Query: 2 PPKPGMPAASYPVQYPSPYPAQPXGPPAYFETLAGGAATPYPTSQPPS--NPDYMDAPKA 59
PP P P P P PA P PP T + P P PP+ +P P A
Sbjct: 1461 PPPAPTPQPQPPPPPPPPQPALPSPPPLVAPTPSSPPPPPLPPPPPPAMPSPPPPPPPAA 1520
Query: 60 AP 61
AP
Sbjct: 1521 AP 1522
Score = 29.6 bits (65), Expect = 0.54
Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 2 PPKPGMPAASYPVQYPSPYPAQPXGPPAYFETLAGGAATPYPTSQPPSNPDYMDAPKAAP 61
PP P P P P P QP P+ +A ++P P PP P M +P P
Sbjct: 1458 PPTPPPAPTPQPQPPPPPPPPQP-ALPSPPPLVAPTPSSPPPPPLPPPPPPAMPSPPPPP 1516
Score = 28.9 bits (63), Expect = 0.93
Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 10/60 (16%)
Query: 2 PPKPGMPAASYPVQYPSPYPAQPXGPPAYFETLAGGAATPYPTSQPPSNPDYMDAPKAAP 61
PP+P +P+ P +P P+ P PP P PP P AP AAP
Sbjct: 1477 PPQPALPS---PPPLVAPTPSSPPPPPL-------PPPPPPAMPSPPPPPPPAAAPLAAP 1526
Score = 28.1 bits (61), Expect = 1.6
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 9/55 (16%)
Query: 2 PPKPGMPAASYPVQYPSPYPAQPXGPPAYFETLAGGAATP-YPTSQPPSNPDYMD 55
PP P +P P P PA P PP A AA P P + P +P+ D
Sbjct: 1496 PPPPPLP--------PPPPPAMPSPPPPPPPAAAPLAAPPEEPAAPSPEDPELPD 1542
>gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens]
Length = 1120
Score = 33.9 bits (76), Expect = 0.029
Identities = 23/66 (34%), Positives = 25/66 (37%), Gaps = 10/66 (15%)
Query: 2 PPK-----PGMPAASYPVQYP-----SPYPAQPXGPPAYFETLAGGAATPYPTSQPPSNP 51
PPK PG Y YP SP P P G P F LAG ATP +P
Sbjct: 657 PPKLCSSLPGQGPPPYVFMYPQGSPSSPAPGPPPGAPWAFSYLAGPPATPPDPPRPKRRS 716
Query: 52 DYMDAP 57
+ P
Sbjct: 717 HSLSRP 722
Score = 26.9 bits (58), Expect = 3.5
Identities = 19/51 (37%), Positives = 20/51 (39%), Gaps = 12/51 (23%)
Query: 3 PKPGM--PAASYPVQYPSPYPAQPXGPPAYFETLAGGAATPYPTSQPPSNP 51
P PG PA+S P PS PAQ P P P QPP P
Sbjct: 943 PTPGESPPASSLPQPEPSSLPAQGVPTP----------LAPSPAMQPPVPP 983
>gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens]
Length = 1202
Score = 33.9 bits (76), Expect = 0.029
Identities = 23/66 (34%), Positives = 25/66 (37%), Gaps = 10/66 (15%)
Query: 2 PPK-----PGMPAASYPVQYP-----SPYPAQPXGPPAYFETLAGGAATPYPTSQPPSNP 51
PPK PG Y YP SP P P G P F LAG ATP +P
Sbjct: 739 PPKLCSSLPGQGPPPYVFMYPQGSPSSPAPGPPPGAPWAFSYLAGPPATPPDPPRPKRRS 798
Query: 52 DYMDAP 57
+ P
Sbjct: 799 HSLSRP 804
Score = 26.9 bits (58), Expect = 3.5
Identities = 19/51 (37%), Positives = 20/51 (39%), Gaps = 12/51 (23%)
Query: 3 PKPGM--PAASYPVQYPSPYPAQPXGPPAYFETLAGGAATPYPTSQPPSNP 51
P PG PA+S P PS PAQ P P P QPP P
Sbjct: 1025 PTPGESPPASSLPQPEPSSLPAQGVPTP----------LAPSPAMQPPVPP 1065
>gi|210032580 SET domain containing 1B [Homo sapiens]
Length = 1923
Score = 33.5 bits (75), Expect = 0.038
Identities = 19/61 (31%), Positives = 22/61 (36%), Gaps = 10/61 (16%)
Query: 1 MPPKPGMPAASYPVQYPSPYPAQPXGPPAYFETLAGGAATPYPTSQPPSNPDYMDAPKAA 60
+PP PG P P P P P P PP P P PP++P P
Sbjct: 681 LPPPPGFPPLPPPPPPPPPQPGFPMPPP----------LPPPPPPPPPAHPAVTVPPPPL 730
Query: 61 P 61
P
Sbjct: 731 P 731
Score = 30.4 bits (67), Expect = 0.32
Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 2 PPKPGMPAASYPVQYPSPYPAQPXGPPAYFETLAGGAATPYPTSQPP 48
PP P P +P+ P P P P PPA+ P P PP
Sbjct: 693 PPPPPPPQPGFPMPPPLP-PPPPPPPPAHPAVTVPPPPLPAPPGVPP 738
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 33.5 bits (75), Expect = 0.038
Identities = 21/63 (33%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
Query: 2 PPKPGMPAASYPVQYPSPYPA---QPXGPPAYFETLAGGAATPYPTSQPPSNPDYMDAPK 58
PP G P S P P+P PA P G P +G TP PP P + P
Sbjct: 136 PPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGPPPPPAAVPGPG 195
Query: 59 AAP 61
P
Sbjct: 196 PGP 198
Score = 29.3 bits (64), Expect = 0.71
Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 11/66 (16%)
Query: 3 PKPGMPAASYPVQYPSPYPAQPXGPPAYFETL-----------AGGAATPYPTSQPPSNP 51
P P P P +P P+ Q PP + G+A P +S PP+ P
Sbjct: 77 PPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSAPPATP 136
Query: 52 DYMDAP 57
AP
Sbjct: 137 PTSGAP 142
Score = 28.5 bits (62), Expect = 1.2
Identities = 17/59 (28%), Positives = 19/59 (32%), Gaps = 8/59 (13%)
Query: 2 PPKPGMPAASYPVQYPSPYPAQPXGPPAYFETLAGGAATPYPTSQPPSNPDYMDAPKAA 60
PP P P Q P P P PP + P+ QPP P P A
Sbjct: 62 PPPPHQQQQQPPPQQPPPQQPPPHQPPPH--------PQPHQQQQPPPPPQDSSKPVVA 112
Score = 26.9 bits (58), Expect = 3.5
Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 12/69 (17%)
Query: 2 PPKPGMPAASYPVQYPSPYPAQPXGPPAYFETLAGGAATPYPTSQPPSN---------PD 52
PP P + Q P P P PPA + + ATP + PP + P
Sbjct: 100 PPPPQDSSKPVVAQGPGPAPGVGSAPPA---SSSAPPATPPTSGAPPGSGPGPTPTPPPA 156
Query: 53 YMDAPKAAP 61
AP AP
Sbjct: 157 VTSAPPGAP 165
Score = 26.2 bits (56), Expect = 6.0
Identities = 15/51 (29%), Positives = 17/51 (33%), Gaps = 10/51 (19%)
Query: 1 MPPKPGMPAASYPVQYPSPYPAQPXGPPAYFETLAGGAATPYPTSQPPSNP 51
M P PG P+ P P+ Q PP P P PP P
Sbjct: 47 MGPGPGQSGPKPPIPPPPPHQQQQQPPP----------QQPPPQQPPPHQP 87
>gi|33286442 BCL6 co-repressor-like 1 [Homo sapiens]
Length = 1711
Score = 33.5 bits (75), Expect = 0.038
Identities = 18/59 (30%), Positives = 24/59 (40%)
Query: 3 PKPGMPAASYPVQYPSPYPAQPXGPPAYFETLAGGAATPYPTSQPPSNPDYMDAPKAAP 61
P P P A P P+P + +++ P P S PPS P + AP AP
Sbjct: 246 PAPSPPLAPVPALAPAPPSVPTLISDSNPLSVSASVLVPVPASAPPSGPVPLSAPAPAP 304
Score = 33.5 bits (75), Expect = 0.038
Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 3 PKPGMPAASYPVQYPSPYPAQPXGPPAYFETLAGGAATPYPTSQPPSNPDYMDAPKAAP 61
P PAA P P P P GPP+ + A TP P P P + AP P
Sbjct: 342 PASTPPAAPAPPSVPMPTPTPSSGPPSTPTLIPAFAPTPVPAPTPA--PIFTPAPTPMP 398
>gi|5031681 embryonal Fyn-associated substrate isoform 1 [Homo
sapiens]
Length = 561
Score = 33.5 bits (75), Expect = 0.038
Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 3 PKPGMPAASYPVQYPSPYPAQPXGPPAYFETLAGGAATPYPTSQPPSNP 51
PKP + AS P Q SPYPA + A P PTS PP+ P
Sbjct: 72 PKPSLSPAS-PAQPGSPYPAPDHSNEDQEVYVVPPPARPCPTSGPPAGP 119
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 33.1 bits (74), Expect = 0.049
Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 9/56 (16%)
Query: 8 PAASYPVQYPSPY--PAQPXGPPAYFETLAGGAATPYPTSQPPSNPDYMDAPKAAP 61
P +S P+ PSP A+P PP AATP P + PPS P P A P
Sbjct: 298 PLSSSPLATPSPSGTKARPVPPP-------DNAATPLPATLPPSPPLATPLPLAPP 346
Score = 29.6 bits (65), Expect = 0.54
Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 13/61 (21%)
Query: 2 PPKPGM-PAASYPVQYPSPYPAQPXGPPAYFETLAGGAATPYPTSQPPSNPDYMDAPKAA 60
P P M P+A+ P Q P P A P P P P + PP +P P+
Sbjct: 711 PASPPMSPSATPPPQAPPPLAAPPLQVP------------PSPPASPPMSPSATPPPRVP 758
Query: 61 P 61
P
Sbjct: 759 P 759
Score = 28.5 bits (62), Expect = 1.2
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 3 PKPGMPAASYPVQYPSPY-PAQPXGPPAYFETLAGGAATPYPTSQPPS 49
P P S P+ P P P P PP+ +TL ATP P+ PPS
Sbjct: 326 PLPATLPPSPPLATPLPLAPPSPSAPPS-LQTLPSPPATP-PSQAPPS 371
Score = 28.5 bits (62), Expect = 1.2
Identities = 21/68 (30%), Positives = 26/68 (38%), Gaps = 8/68 (11%)
Query: 2 PPKPGMPAASYPVQYPSPYPAQP-----XGPPAYFETLAGGAATPYPTSQP---PSNPDY 53
PP+ P A+ P+Q P PA P PP L P S P P +P
Sbjct: 723 PPQAPPPLAAPPLQVPPSPPASPPMSPSATPPPRVPPLLAAPPLQVPPSPPASLPMSPLA 782
Query: 54 MDAPKAAP 61
P+A P
Sbjct: 783 KPPPQAPP 790
Score = 28.1 bits (61), Expect = 1.6
Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 8/65 (12%)
Query: 5 PGMPAASYPVQYPSPYPAQPXGPPAYF------ETLAGG--AATPYPTSQPPSNPDYMDA 56
P P S PVQ P PA P P+ +LA P P + PP +P
Sbjct: 664 PFSPPPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPP 723
Query: 57 PKAAP 61
P+A P
Sbjct: 724 PQAPP 728
>gi|209180481 Cas-Br-M (murine) ecotropic retroviral transforming
sequence-like 1 [Homo sapiens]
Length = 491
Score = 33.1 bits (74), Expect = 0.049
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 12/68 (17%)
Query: 2 PPKPGMPAASYPVQYPSPYPAQPXGPPAYFETLAGG---AATPYPTSQPPSN-----PDY 53
PP P P P+ +P P+P Q G P + A + P P + PP + P Y
Sbjct: 343 PPPPPPP----PISHPMPHPPQAAGTPHLVYSQAPPPPMTSAPPPITPPPGHIIAQMPPY 398
Query: 54 MDAPKAAP 61
M+ P P
Sbjct: 399 MNHPPPGP 406
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 33.1 bits (74), Expect = 0.049
Identities = 20/65 (30%), Positives = 24/65 (36%), Gaps = 5/65 (7%)
Query: 2 PPKPGMPAASYPV-----QYPSPYPAQPXGPPAYFETLAGGAATPYPTSQPPSNPDYMDA 56
P PG P P Q P P P +P GPP G P PP D +
Sbjct: 51 PSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRS 110
Query: 57 PKAAP 61
P++ P
Sbjct: 111 PRSPP 115
Score = 31.2 bits (69), Expect = 0.19
Identities = 21/67 (31%), Positives = 26/67 (38%), Gaps = 8/67 (11%)
Query: 2 PPKPGMPAASYPV-----QYPSPYPAQPXGPPAYFETLAGGAATP--YPTSQPPSNPDYM 54
PP PG P P Q P P P +P GPP + + A +P P PP +
Sbjct: 195 PPPPGKPQGPPPQGGNKPQGPPP-PGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQP 253
Query: 55 DAPKAAP 61
P P
Sbjct: 254 QGPPPPP 260
Score = 30.0 bits (66), Expect = 0.42
Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 8/67 (11%)
Query: 2 PPKPGMPAASYP-----VQYPSPYPAQPXGPPAYFETLAGGAATP--YPTSQPPSNPDYM 54
PP PG P P Q P P P +P GPP + + + +P P PP +
Sbjct: 133 PPPPGKPQGPPPQGGNKPQGPPP-PGKPQGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQP 191
Query: 55 DAPKAAP 61
P P
Sbjct: 192 QGPPPPP 198
Score = 28.9 bits (63), Expect = 0.93
Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 8/67 (11%)
Query: 2 PPKPGMPAASYP-----VQYPSPYPAQPXGPPAYFETLAGGAATP--YPTSQPPSNPDYM 54
PP PG P P Q P P P +P GPP + + + +P P PP +
Sbjct: 257 PPPPGKPQGPPPQGGNKPQGPPP-PGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQP 315
Query: 55 DAPKAAP 61
P P
Sbjct: 316 QGPPPPP 322
Score = 27.3 bits (59), Expect = 2.7
Identities = 18/62 (29%), Positives = 20/62 (32%), Gaps = 5/62 (8%)
Query: 5 PGMPAASYPV-----QYPSPYPAQPXGPPAYFETLAGGAATPYPTSQPPSNPDYMDAPKA 59
PG P P Q P P P +P GPP G P PP D
Sbjct: 115 PGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSRSSR 174
Query: 60 AP 61
+P
Sbjct: 175 SP 176
Score = 26.9 bits (58), Expect = 3.5
Identities = 17/54 (31%), Positives = 19/54 (35%), Gaps = 10/54 (18%)
Query: 2 PPKPGMPAASYP----VQYPSPYPAQPXGPPAYFETLAGGAATPYPTSQPPSNP 51
PP PG P P + P P +P GPP G P PP P
Sbjct: 92 PPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQ------GGNQPQGPPPPPGKP 139
Score = 26.9 bits (58), Expect = 3.5
Identities = 18/62 (29%), Positives = 20/62 (32%), Gaps = 5/62 (8%)
Query: 5 PGMPAASYPV-----QYPSPYPAQPXGPPAYFETLAGGAATPYPTSQPPSNPDYMDAPKA 59
PG P P Q P P P +P GPP G P PP D
Sbjct: 177 PGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSQSAR 236
Query: 60 AP 61
+P
Sbjct: 237 SP 238
Score = 26.9 bits (58), Expect = 3.5
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 6/52 (11%)
Query: 2 PPKPGMPAASYP-----VQYPSPYPAQPXGPPAYFETLAGGAATPYPTSQPP 48
PP PG P P Q P P P +P GPP + + A +P Q P
Sbjct: 319 PPPPGKPQGPPPQGGNKPQGPPP-PGKPQGPPPQGGSKSRSARSPPGKPQGP 369
Score = 26.6 bits (57), Expect = 4.6
Identities = 12/27 (44%), Positives = 13/27 (48%)
Query: 2 PPKPGMPAASYPVQYPSPYPAQPXGPP 28
P P PA P Q +P QP GPP
Sbjct: 377 PQGPPPPAGGNPQQPQAPPAGQPQGPP 403
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.308 0.132 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,218,324
Number of Sequences: 37866
Number of extensions: 246400
Number of successful extensions: 2984
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 303
Number of HSP's that attempted gapping in prelim test: 1912
Number of HSP's gapped (non-prelim): 1244
length of query: 61
length of database: 18,247,518
effective HSP length: 34
effective length of query: 27
effective length of database: 16,960,074
effective search space: 457921998
effective search space used: 457921998
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.