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Search of human proteins with 239752278
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239752278 PREDICTED: hypothetical protein [Homo sapiens]
(252 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752278 PREDICTED: hypothetical protein [Homo sapiens] 511 e-145
gi|239746791 PREDICTED: hypothetical protein XP_002343850 [Homo ... 511 e-145
gi|38176300 nestin [Homo sapiens] 39 0.006
gi|239741731 PREDICTED: hypothetical protein XP_002342307 [Homo ... 38 0.007
gi|33356148 formin-like 1 [Homo sapiens] 38 0.010
gi|160707881 formin 2 [Homo sapiens] 37 0.021
gi|4758392 forkhead box D1 [Homo sapiens] 37 0.021
gi|195972805 myocyte enhancer factor 2A isoform 4 [Homo sapiens] 36 0.028
gi|195972803 myocyte enhancer factor 2A isoform 3 [Homo sapiens] 36 0.028
gi|195972801 myocyte enhancer factor 2A isoform 2 [Homo sapiens] 36 0.028
gi|110832843 TBP-associated factor 4 [Homo sapiens] 36 0.037
gi|32455273 WNK lysine deficient protein kinase 2 [Homo sapiens] 35 0.048
gi|11415052 retinoid X receptor, beta [Homo sapiens] 35 0.062
gi|5174545 myocyte enhancer factor 2D [Homo sapiens] 35 0.081
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa... 35 0.081
gi|21704281 junctophilin 2 isoform 1 [Homo sapiens] 34 0.11
gi|24308073 protein tyrosine phosphatase, non-receptor type 23 [... 34 0.11
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 34 0.14
gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens] 34 0.14
gi|195972799 myocyte enhancer factor 2A isoform 1 [Homo sapiens] 33 0.18
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 33 0.18
gi|20986497 mitogen-activated protein kinase 7 isoform 1 [Homo s... 33 0.24
gi|209529736 mitogen-activated protein kinase 7 isoform 1 [Homo ... 33 0.24
gi|209529734 mitogen-activated protein kinase 7 isoform 1 [Homo ... 33 0.24
gi|20986499 mitogen-activated protein kinase 7 isoform 2 [Homo s... 33 0.24
gi|7662238 apoptotic chromatin condensation inducer 1 [Homo sapi... 33 0.31
gi|149999378 inverted formin 2 isoform 2 [Homo sapiens] 33 0.31
gi|149999380 inverted formin 2 isoform 1 [Homo sapiens] 33 0.31
gi|18959212 GS homeobox 2 [Homo sapiens] 33 0.31
gi|148727255 microtubule associated serine/threonine kinase fami... 33 0.31
>gi|239752278 PREDICTED: hypothetical protein [Homo sapiens]
Length = 252
Score = 511 bits (1316), Expect = e-145
Identities = 252/252 (100%), Positives = 252/252 (100%)
Query: 1 MLVQHVGFLEGGDDDPAVAPGGLQVRVETVLGAVDREEAVNEVALDLGQAVLGRQQVLHA 60
MLVQHVGFLEGGDDDPAVAPGGLQVRVETVLGAVDREEAVNEVALDLGQAVLGRQQVLHA
Sbjct: 1 MLVQHVGFLEGGDDDPAVAPGGLQVRVETVLGAVDREEAVNEVALDLGQAVLGRQQVLHA 60
Query: 61 LLDLVAAEAGAEQDGDEHRRRGEEDRVTGNEVAEPGETRPQAPVQNLPQHPRAERAREEG 120
LLDLVAAEAGAEQDGDEHRRRGEEDRVTGNEVAEPGETRPQAPVQNLPQHPRAERAREEG
Sbjct: 61 LLDLVAAEAGAEQDGDEHRRRGEEDRVTGNEVAEPGETRPQAPVQNLPQHPRAERAREEG 120
Query: 121 EAHARRGVAPEWIGAGQLCCTPPNLPPSPLVIKVLIMTVSRWNCPSPGLPGSRAPGLPGS 180
EAHARRGVAPEWIGAGQLCCTPPNLPPSPLVIKVLIMTVSRWNCPSPGLPGSRAPGLPGS
Sbjct: 121 EAHARRGVAPEWIGAGQLCCTPPNLPPSPLVIKVLIMTVSRWNCPSPGLPGSRAPGLPGS 180
Query: 181 RFFALPSLPPPLSVVTSRSGGPGAAWLARAPLRAAGEIQVSERVEPQGARGSPRGADGLA 240
RFFALPSLPPPLSVVTSRSGGPGAAWLARAPLRAAGEIQVSERVEPQGARGSPRGADGLA
Sbjct: 181 RFFALPSLPPPLSVVTSRSGGPGAAWLARAPLRAAGEIQVSERVEPQGARGSPRGADGLA 240
Query: 241 KLGVCVCAPAVS 252
KLGVCVCAPAVS
Sbjct: 241 KLGVCVCAPAVS 252
>gi|239746791 PREDICTED: hypothetical protein XP_002343850 [Homo
sapiens]
Length = 252
Score = 511 bits (1316), Expect = e-145
Identities = 252/252 (100%), Positives = 252/252 (100%)
Query: 1 MLVQHVGFLEGGDDDPAVAPGGLQVRVETVLGAVDREEAVNEVALDLGQAVLGRQQVLHA 60
MLVQHVGFLEGGDDDPAVAPGGLQVRVETVLGAVDREEAVNEVALDLGQAVLGRQQVLHA
Sbjct: 1 MLVQHVGFLEGGDDDPAVAPGGLQVRVETVLGAVDREEAVNEVALDLGQAVLGRQQVLHA 60
Query: 61 LLDLVAAEAGAEQDGDEHRRRGEEDRVTGNEVAEPGETRPQAPVQNLPQHPRAERAREEG 120
LLDLVAAEAGAEQDGDEHRRRGEEDRVTGNEVAEPGETRPQAPVQNLPQHPRAERAREEG
Sbjct: 61 LLDLVAAEAGAEQDGDEHRRRGEEDRVTGNEVAEPGETRPQAPVQNLPQHPRAERAREEG 120
Query: 121 EAHARRGVAPEWIGAGQLCCTPPNLPPSPLVIKVLIMTVSRWNCPSPGLPGSRAPGLPGS 180
EAHARRGVAPEWIGAGQLCCTPPNLPPSPLVIKVLIMTVSRWNCPSPGLPGSRAPGLPGS
Sbjct: 121 EAHARRGVAPEWIGAGQLCCTPPNLPPSPLVIKVLIMTVSRWNCPSPGLPGSRAPGLPGS 180
Query: 181 RFFALPSLPPPLSVVTSRSGGPGAAWLARAPLRAAGEIQVSERVEPQGARGSPRGADGLA 240
RFFALPSLPPPLSVVTSRSGGPGAAWLARAPLRAAGEIQVSERVEPQGARGSPRGADGLA
Sbjct: 181 RFFALPSLPPPLSVVTSRSGGPGAAWLARAPLRAAGEIQVSERVEPQGARGSPRGADGLA 240
Query: 241 KLGVCVCAPAVS 252
KLGVCVCAPAVS
Sbjct: 241 KLGVCVCAPAVS 252
>gi|38176300 nestin [Homo sapiens]
Length = 1621
Score = 38.5 bits (88), Expect = 0.006
Identities = 54/152 (35%), Positives = 69/152 (45%), Gaps = 28/152 (18%)
Query: 13 DDDPAVAPGGLQVRVETVLGAVDREEAVNEVALDL----GQAV--------LGRQQVLHA 60
+DD VAPGG Q E +LG+ E A+ E A GQ V L R++V+
Sbjct: 1068 EDD--VAPGGDQASPEVMLGS---EPAMGESAAGAEPGPGQGVGGLGDPGHLTREEVMEP 1122
Query: 61 LLDLVAAEAGAEQDGDEHRRRGEEDRVTGNEVAE-PGETRPQAPVQNLPQHPRAERAREE 119
L+ + EA Q + R+ EE G E +E PG++R P P E REE
Sbjct: 1123 PLEEESLEAKRVQGLEGPRKDLEEAGGLGTEFSELPGKSRD-------PWEPPRE-GREE 1174
Query: 120 GEAHARRGVAPEWIGAGQLCCTPPNLP-PSPL 150
EA A RG A E A L T + P P PL
Sbjct: 1175 SEAEAPRG-AEEAFPAETLGHTGSDAPSPWPL 1205
>gi|239741731 PREDICTED: hypothetical protein XP_002342307 [Homo
sapiens]
Length = 316
Score = 38.1 bits (87), Expect = 0.007
Identities = 37/124 (29%), Positives = 50/124 (40%), Gaps = 18/124 (14%)
Query: 141 TPPNLPPSPLVIKVLIMTVSRWNCPSPGLPGSRAPGLPGSRFFALPSLPPPLSVVTSR-- 198
T P LPP+ L + V + P P P SR PG +R LPPPL + SR
Sbjct: 179 TVPGLPPASLQP----LRVPYFAPPGPHDPTSRGPGRLLTREPPSRKLPPPLPLCRSRWV 234
Query: 199 ------SGGPGAAWLARAPLRAAGEIQVSERVEPQGARGSP-----RGADGLAKLGVCVC 247
PG A PLR ++ + V+P+ G P G ++L C
Sbjct: 235 LAPPPPPAPPGPNAAAHPPLRPP-RARLQDPVDPERCPGGPSRGPGHGTHAHSELPTCTR 293
Query: 248 APAV 251
P+V
Sbjct: 294 LPSV 297
>gi|33356148 formin-like 1 [Homo sapiens]
Length = 1100
Score = 37.7 bits (86), Expect = 0.010
Identities = 48/191 (25%), Positives = 72/191 (37%), Gaps = 29/191 (15%)
Query: 37 EEAVNEVALDLGQAVLGRQQVLHALLDLVAAEAGAEQDGDEHRRRGEEDRVTG--NEVAE 94
EE +VAL + + + + +L + A ++ + R R E G E
Sbjct: 402 EELQEQVALLTERLRDAENESMAKIAELEKQLSQARKELETLRERFSESTAMGASRRPPE 461
Query: 95 PGETRPQAPVQNLPQHPRAERAREEGEAHARRGVAPEWIGAGQLCCTPPNLPPSPLVIKV 154
P + P AP + + E E+G RG P S ++ V
Sbjct: 462 PEKAPPAAPTRPSALELKVEELEEKGLIRILRG---------------PGDAVSIEILPV 506
Query: 155 LIMTVSRWNCPSPGLP-GSRAPGL-------PGSRFFALPSLPPPLSVVTSRSGGPGAAW 206
+ T S + P+PG+P GS +P L PG A P PPPL + S P +A
Sbjct: 507 AVATPSGGDAPTPGVPTGSPSPDLAPAAEPAPG----AAPPPPPPLPGLPSPQEAPPSAP 562
Query: 207 LARAPLRAAGE 217
PL + E
Sbjct: 563 PQAPPLPGSPE 573
>gi|160707881 formin 2 [Homo sapiens]
Length = 1722
Score = 36.6 bits (83), Expect = 0.021
Identities = 29/75 (38%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 165 PSPG-LPGSRAPGLPGSRFFALPSLPPPLSVVTSRSGGPGAAWLARAPLRAAGEIQVSER 223
PSPG LP S AP LP ++ A S P + GPG A AP+R AG+ E
Sbjct: 294 PSPGGLPVSEAPSLPAAQPAAKDS--PSSTAFPFPEAGPGEE-AAGAPVRGAGD--TDEE 348
Query: 224 VEPQGARGSPRGADG 238
E +PRG+ G
Sbjct: 349 GEEDAFEDAPRGSPG 363
Score = 30.0 bits (66), Expect = 2.0
Identities = 28/86 (32%), Positives = 33/86 (38%), Gaps = 19/86 (22%)
Query: 141 TPPNLPPSPLVIKVLIMTVSRWNCPSPGLPGSRAPG---LPGSRFFALPSL-------PP 190
T P LP + + + P P LPG+ P LPG+ LP L PP
Sbjct: 887 TVPTLPSTAIPQPPPLQGTEMLPPPPPPLPGAGIPPPPPLPGAGILPLPPLPGAGIPPPP 946
Query: 191 PLSVVTSRSGGPGAAWLARAPLRAAG 216
PL PGAA PL AG
Sbjct: 947 PL---------PGAAIPPPPPLPGAG 963
Score = 29.3 bits (64), Expect = 3.4
Identities = 28/89 (31%), Positives = 33/89 (37%), Gaps = 12/89 (13%)
Query: 140 CTPPNLPPSPLVIKVLIMT-VSRWNCPSPGLPGSRAPGLPGSRF---------FALPSLP 189
C P+ PP P M + P P LPG P LP + LP P
Sbjct: 853 CNIPSPPPLPCTESSSSMPGLGMVPPPPPPLPGMTVPTLPSTAIPQPPPLQGTEMLPPPP 912
Query: 190 PPL--SVVTSRSGGPGAAWLARAPLRAAG 216
PPL + + PGA L PL AG
Sbjct: 913 PPLPGAGIPPPPPLPGAGILPLPPLPGAG 941
Score = 27.7 bits (60), Expect = 9.9
Identities = 37/122 (30%), Positives = 41/122 (33%), Gaps = 20/122 (16%)
Query: 95 PGETRPQAPVQNLPQHPRAERAREEGEAHARRGVAPEWIGAGQLCCTPPNLPPSPLVIKV 154
PG T P P +PQ P + P GAG PP P I
Sbjct: 884 PGMTVPTLPSTAIPQPPPLQGTEMLPPP------PPPLPGAG----IPPPPPLPGAGILP 933
Query: 155 LIMTVSRWNCPSPGLPGSRAPGLPGSRFFALPSLPPPLSVVTSRSGGPGAAWLARAPLRA 214
L P P LPG+ P P +P LPPPL PGA PL
Sbjct: 934 LPPLPGAGIPPPPPLPGAAIPPPPPLPGAGIP-LPPPL---------PGAGIPPPPPLPG 983
Query: 215 AG 216
AG
Sbjct: 984 AG 985
>gi|4758392 forkhead box D1 [Homo sapiens]
Length = 465
Score = 36.6 bits (83), Expect = 0.021
Identities = 28/87 (32%), Positives = 37/87 (42%), Gaps = 9/87 (10%)
Query: 134 GAGQLCCTPPNLPPSPLVIKVLIMTVSR----WNCPSPGLPGSRAPGLPGSRFFALP--- 186
G G PP PPS L + + P P P A L + F P
Sbjct: 275 GCGYGLQLPPYAPPSALFAAAAAAAAAAAFHPHSPPPPPPPHGAAAELARTAFGYRPHPL 334
Query: 187 --SLPPPLSVVTSRSGGPGAAWLARAP 211
+LP PL +++GGPGA+ LAR+P
Sbjct: 335 GAALPGPLPASAAKAGGPGASALARSP 361
>gi|195972805 myocyte enhancer factor 2A isoform 4 [Homo sapiens]
Length = 429
Score = 36.2 bits (82), Expect = 0.028
Identities = 29/96 (30%), Positives = 38/96 (39%), Gaps = 3/96 (3%)
Query: 142 PPNLPPSPLVIKVLIMTVSRWNCPSPGLPGSR--APGLPGSRFFALPSLPPPLSVVTSRS 199
PP LPP + V + S N S PGS +P L S S+ P R+
Sbjct: 62 PPGLPPQNFSMSVTVPVTSP-NALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRN 120
Query: 200 GGPGAAWLARAPLRAAGEIQVSERVEPQGARGSPRG 235
PGA + A G + ++ P GA SP G
Sbjct: 121 VSPGAPQRPPSTGNAGGMLSTTDLTVPNGAGSSPVG 156
>gi|195972803 myocyte enhancer factor 2A isoform 3 [Homo sapiens]
Length = 437
Score = 36.2 bits (82), Expect = 0.028
Identities = 29/96 (30%), Positives = 38/96 (39%), Gaps = 3/96 (3%)
Query: 142 PPNLPPSPLVIKVLIMTVSRWNCPSPGLPGSR--APGLPGSRFFALPSLPPPLSVVTSRS 199
PP LPP + V + S N S PGS +P L S S+ P R+
Sbjct: 62 PPGLPPQNFSMSVTVPVTSP-NALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRN 120
Query: 200 GGPGAAWLARAPLRAAGEIQVSERVEPQGARGSPRG 235
PGA + A G + ++ P GA SP G
Sbjct: 121 VSPGAPQRPPSTGNAGGMLSTTDLTVPNGAGSSPVG 156
>gi|195972801 myocyte enhancer factor 2A isoform 2 [Homo sapiens]
Length = 497
Score = 36.2 bits (82), Expect = 0.028
Identities = 29/96 (30%), Positives = 38/96 (39%), Gaps = 3/96 (3%)
Query: 142 PPNLPPSPLVIKVLIMTVSRWNCPSPGLPGSR--APGLPGSRFFALPSLPPPLSVVTSRS 199
PP LPP + V + S N S PGS +P L S S+ P R+
Sbjct: 130 PPGLPPQNFSMSVTVPVTSP-NALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRN 188
Query: 200 GGPGAAWLARAPLRAAGEIQVSERVEPQGARGSPRG 235
PGA + A G + ++ P GA SP G
Sbjct: 189 VSPGAPQRPPSTGNAGGMLSTTDLTVPNGAGSSPVG 224
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 35.8 bits (81), Expect = 0.037
Identities = 37/130 (28%), Positives = 44/130 (33%), Gaps = 28/130 (21%)
Query: 130 PEWIGAGQLCCTPPNL----PPSPLVIKVLIMTVSRWNCPSPGLPGSRAPGLPGSRFFAL 185
P+ G + TPP + PP+P PSP P + AP P A
Sbjct: 229 PKPAAPGTVIQTPPFVGAAAPPAPAA-------------PSP--PAAPAPAAPA----AA 269
Query: 186 PSLPPPLSVVTSR-----SGGPGAAWLARAPLRAAGEIQVSERVEPQGARGSPRGADGLA 240
P PPP +R +G P AA P A P A G P G G
Sbjct: 270 PPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQP 329
Query: 241 KLGVCVCAPA 250
G APA
Sbjct: 330 GPGAAAAAPA 339
>gi|32455273 WNK lysine deficient protein kinase 2 [Homo sapiens]
Length = 2217
Score = 35.4 bits (80), Expect = 0.048
Identities = 39/169 (23%), Positives = 64/169 (37%), Gaps = 32/169 (18%)
Query: 87 VTGNEVAEPGETRPQAPVQNLPQHPRAERAREEGEAHARRGVAPEWIGAGQLCC-----T 141
V + E E+ P P+ +LP + A + + ++ P ++ + QL
Sbjct: 1318 VAEHPAPEAPESSPPLPLSSLPPEASQDSAPYKDQLSSKE--QPSFLASQQLLSQAGPSN 1375
Query: 142 PPNLPPSPLVIKVLIMTVSRWNCPSPGLPGSRAPGLPGSRFFALPSLPPPLSVVTSRSGG 201
PP PP+PL + P LP A A ++P P S S++GG
Sbjct: 1376 PPGAPPAPLAPS---------SPPVTALPQDGAAP-------ATSTMPEPASGTASQAGG 1419
Query: 202 PGAAWLARAPLRAAGEIQVSERVEPQGARGSPRGADGLAKLGVCVCAPA 250
PG P E++ S+ + +P L +G+ C PA
Sbjct: 1420 PG------TPQGLTSELETSQPLAE--THEAPLAVQPLV-VGLAPCTPA 1459
>gi|11415052 retinoid X receptor, beta [Homo sapiens]
Length = 533
Score = 35.0 bits (79), Expect = 0.062
Identities = 28/78 (35%), Positives = 35/78 (44%), Gaps = 11/78 (14%)
Query: 165 PSPGLPGSRAPGLPGSRFFALPSLPP-----PLSVVTSRSGGPGAAWLARAPLRAAGEI- 218
P P LP S AP L GS P +PP P V++S G PG AP +G +
Sbjct: 101 PGPPLPPSTAPSLGGSGAPPPPPMPPPPLGSPFPVISSSMGSPGLP--PPAPPGFSGPVS 158
Query: 219 --QVSERVE-PQGARGSP 233
Q++ V P G G P
Sbjct: 159 SPQINSTVSLPGGGSGPP 176
>gi|5174545 myocyte enhancer factor 2D [Homo sapiens]
Length = 521
Score = 34.7 bits (78), Expect = 0.081
Identities = 30/119 (25%), Positives = 45/119 (37%), Gaps = 19/119 (15%)
Query: 90 NEVAEPGETRPQAPV-------QNLPQHPRAERAREEGEAHARRGVAPEWIGAGQLCC-T 141
+ + +P PQ P LPQ P + A G+ ++ G P +G G +
Sbjct: 171 SSLTDPRLLSPQQPALQRNSVSPGLPQRPASAGAMLGGDLNSANGACPSPVGNGYVSARA 230
Query: 142 PPNLPPSPLVIKVLIMTVSRWNCPSPGLPGSRAPGLPGSRFFALPSLPPPLSVVTSRSG 200
P L P V+ N + +P P S PS P L V+TS++G
Sbjct: 231 SPGLLP-----------VANGNSLNKVIPAKSPPPPTHSTQLGAPSRKPDLRVITSQAG 278
>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
sapiens]
Length = 2715
Score = 34.7 bits (78), Expect = 0.081
Identities = 36/129 (27%), Positives = 46/129 (35%), Gaps = 16/129 (12%)
Query: 114 ERAREEGEAHARRGVAPEWIGAGQL----CCTPPNLPPSPLVIKVLIMTVSRWN---CPS 166
E +EGE R VA E + A + PP PP+P L + CP
Sbjct: 372 EEKDKEGEEKEERAVAEEMMPAAEKEEAKLPPPPLTPPAPSPPPPLPPPSTSPPPPLCPP 431
Query: 167 PGLPGSRAPGLPGSRFFALPSLPPPLSVVTSRSGGPGAAWLARAPLRAAGEIQVSERVEP 226
P P S P LPS PPP + P + R + S+R E
Sbjct: 432 PPPPVSPPP---------LPSPPPPPAQEEQEESPPPVVPATCSRKRGRPPLTPSQRAER 482
Query: 227 QGARGSPRG 235
+ AR P G
Sbjct: 483 EAARAGPEG 491
Score = 33.9 bits (76), Expect = 0.14
Identities = 40/135 (29%), Positives = 53/135 (39%), Gaps = 19/135 (14%)
Query: 82 GEEDRVTGNEVAEPGETRPQAPVQNL-----PQHPRAERAREEGEAHARRGV---APEWI 133
G ED +V PG +P+QNL P A + AR V +P
Sbjct: 1816 GGEDPPLDTDVLVPGAPERHSPIQNLDPPLRPDSGSAPPPAPRSFSGARIKVPNYSPSRR 1875
Query: 134 GAGQLCCTPPNLPPSPLVIKVLIMTVSRWNCPSP----GLPGSRAPGLPGSRFFALP--- 186
G + P P SP + I TV + P+P P AP P SR+ + P
Sbjct: 1876 PLGGVSFGPLPSPGSPSSLTHHIPTVGDPDFPAPPRRSRRPSPLAPRPPPSRWASPPLKT 1935
Query: 187 ----SLPPPLSVVTS 197
+PPP SVVT+
Sbjct: 1936 SPQLRVPPPTSVVTA 1950
>gi|21704281 junctophilin 2 isoform 1 [Homo sapiens]
Length = 696
Score = 34.3 bits (77), Expect = 0.11
Identities = 48/195 (24%), Positives = 71/195 (36%), Gaps = 25/195 (12%)
Query: 9 LEGGDDDPAVAPGGLQVRVETVLGAVDREEAVNEVALDLGQAVLGRQQVLHALLDLVAAE 68
+EG A+A ++ A + EA + AL Q + L +A +
Sbjct: 370 VEGAQRAAAIARQKAEIAASRTSHAKAKAEAAEQAALAANQ----ESNIARTLARELAPD 425
Query: 69 AGAEQDGDEHRRRGEEDRVTGNEVAEPGETRPQAPVQNLPQHPRAERAREEGEAHARRGV 128
Q G E+++R + N + A LPQ PR E + H R
Sbjct: 426 F--YQPGPEYQKRRLLQEILENSESLLEPPDRGAGAAGLPQPPR-----ESPQLHERETP 478
Query: 129 APEWIGAGQLCCTPPN-LPPSPLVIKVLIMTVSRWN-----------CPSPGLPGSRAPG 176
PE G+ TPP P P V K +++ WN PS G G R+P
Sbjct: 479 RPEG-GSPSPAGTPPQPKRPRPGVSKDGLLSPGAWNGEPSGEGSRSVTPSEG-AGRRSPA 536
Query: 177 LPGSRFFALPSLPPP 191
P + A+ +L P
Sbjct: 537 RPATERMAIEALQAP 551
>gi|24308073 protein tyrosine phosphatase, non-receptor type 23
[Homo sapiens]
Length = 1636
Score = 34.3 bits (77), Expect = 0.11
Identities = 36/137 (26%), Positives = 55/137 (40%), Gaps = 22/137 (16%)
Query: 80 RRGEEDRVTGNEVAEPGETRPQAPVQNLPQHPRAERAREEGEAHARRGVAPEWIGAGQLC 139
R ++ E+ + RP AP LP+ REE EA G PE +L
Sbjct: 700 REAARQQLLDRELKKKPPPRPTAPKPLLPR-------REESEA-VEAGDPPE-----ELR 746
Query: 140 CTPPNLPPSPLVIKVLIMTVSRWNCPSPGLPGSRAPGLPGSRFFALPSLPP-----PLSV 194
PP++ P + + + + + P P S PG + + P LPP P +
Sbjct: 747 SLPPDMVAGPRLPDTFLGSATPLHFPPSPFPSSTG---PGPHYLSGP-LPPGTYSGPTQL 802
Query: 195 VTSRSGGPGAAWLARAP 211
+ R+ GP A +A P
Sbjct: 803 IQPRAPGPHAMPVAPGP 819
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 33.9 bits (76), Expect = 0.14
Identities = 30/86 (34%), Positives = 35/86 (40%), Gaps = 18/86 (20%)
Query: 165 PSP-GLPGSRAP----GLPGSRFFALPSLPPPLSVVTSRSG-------GPGAAWLARAPL 212
P P GLPG P G PG R LP P+ + + GP + R P
Sbjct: 1041 PGPAGLPGKDGPPGLRGFPGDR-----GLPGPVGALGLKGNEGPPGPPGPAGSPGERGPA 1095
Query: 213 RAAGEIQVSERVEPQGARGSPRGADG 238
AAG I + R PQG G P G G
Sbjct: 1096 GAAGPIGIPGRPGPQGPPG-PAGEKG 1120
>gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens]
Length = 380
Score = 33.9 bits (76), Expect = 0.14
Identities = 39/144 (27%), Positives = 49/144 (34%), Gaps = 17/144 (11%)
Query: 95 PGETRPQAPVQNLPQHPRAERAREEGEAHARRGVAPEWIGAGQLCCTPPNLPPSPLVIKV 154
P P+ Q Q P E ++A AP G PP PP P
Sbjct: 130 PNGPSPEEVEQQKRQQPGPSEHIERRVSNAGGPPAPPAGGPPP----PPGPPPPP----- 180
Query: 155 LIMTVSRWNCPSPGLPGSRAPGLPGSRFFALPSLPPPLSVVTSRSGGPGAAWLARAPLRA 214
P PGLP S P P PP + GG GA LA A +
Sbjct: 181 -------GPPPPPGLPPSGVPAAAHGAGGGPPPAPPLPAAQGPGGGGAGAPGLA-AAIAG 232
Query: 215 AGEIQVSERVEPQGARGSPRGADG 238
A +VS++ E G +P+ G
Sbjct: 233 AKLRKVSKQEEASGGPTAPKAESG 256
>gi|195972799 myocyte enhancer factor 2A isoform 1 [Homo sapiens]
Length = 499
Score = 33.5 bits (75), Expect = 0.18
Identities = 28/95 (29%), Positives = 37/95 (38%), Gaps = 3/95 (3%)
Query: 143 PNLPPSPLVIKVLIMTVSRWNCPSPGLPGSR--APGLPGSRFFALPSLPPPLSVVTSRSG 200
P LPP + V + S N S PGS +P L S S+ P R+
Sbjct: 133 PGLPPQNFSMSVTVPVTSP-NALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRNV 191
Query: 201 GPGAAWLARAPLRAAGEIQVSERVEPQGARGSPRG 235
PGA + A G + ++ P GA SP G
Sbjct: 192 SPGAPQRPPSTGNAGGMLSTTDLTVPNGAGSSPVG 226
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 33.5 bits (75), Expect = 0.18
Identities = 40/136 (29%), Positives = 48/136 (35%), Gaps = 27/136 (19%)
Query: 108 PQHPRAERAREEG----EAHARRGVAPEWIGAGQLCCTPPNLPPSPLVIKVLIMTVSRWN 163
P PR E E +RRG+ PE GA P PP P ++ L
Sbjct: 913 PPPPRRESRTETRWGPRPGSSRRGIPPEEPGAPPRRAGPIKKPPPPTKVEEL-------- 964
Query: 164 CPSPGLPGSRAPGLPGSRFFALPSLPPPLSVVTSRSGGPGA----AWLARAPLRAAGEIQ 219
P P G P P P PL + + GGP L+ AP R +
Sbjct: 965 PPKPLEQGDETP---------KPPKPDPLKITKGKLGGPKETPPNGNLSPAP-RLRRDYS 1014
Query: 220 VSERVEPQGARGSPRG 235
ERV P RG RG
Sbjct: 1015 Y-ERVGPTSCRGRGRG 1029
Score = 27.7 bits (60), Expect = 9.9
Identities = 27/99 (27%), Positives = 38/99 (38%), Gaps = 22/99 (22%)
Query: 141 TPPNLPPSPLVIKVLIMTVSRWNCPSPGLPGSRAPGLPGSRFFALPSLPPPLSVVTSRSG 200
TPP PP P + PG P + APG P SRF P PL
Sbjct: 825 TPPVPPPPPYLASY------------PGFPENGAPGPPISRFPLEEPGPRPL------PW 866
Query: 201 GPGAAWLAR----APLRAAGEIQVSERVEPQGARGSPRG 235
PG+ +A+ P + + + ++ P+ R RG
Sbjct: 867 PPGSDEVAKIQTPPPKKEPPKEETAQLTGPEAGRKPARG 905
>gi|20986497 mitogen-activated protein kinase 7 isoform 1 [Homo
sapiens]
Length = 816
Score = 33.1 bits (74), Expect = 0.24
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 17/101 (16%)
Query: 142 PPNLPPSPLVIKVLIMTVSRWNCPSPGLPGSRAPG-LPGSRFFALPSLPPPLSVVTSRSG 200
P +P P + + ++ P PGLPGS PG LP + P LPPP +G
Sbjct: 648 PIPVPAPPQIATSTSLLAAQSLVPPPGLPGSSTPGVLP----YFPPGLPPP------DAG 697
Query: 201 GPGAAWLARAP-----LRAAGEIQVSERVEPQGARGSPRGA 236
G + ++ +P + + QV + + P + G+P+G+
Sbjct: 698 GAPQSSMSESPDVNLVTQQLSKSQVEDPLPPVFS-GTPKGS 737
>gi|209529736 mitogen-activated protein kinase 7 isoform 1 [Homo
sapiens]
Length = 816
Score = 33.1 bits (74), Expect = 0.24
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 17/101 (16%)
Query: 142 PPNLPPSPLVIKVLIMTVSRWNCPSPGLPGSRAPG-LPGSRFFALPSLPPPLSVVTSRSG 200
P +P P + + ++ P PGLPGS PG LP + P LPPP +G
Sbjct: 648 PIPVPAPPQIATSTSLLAAQSLVPPPGLPGSSTPGVLP----YFPPGLPPP------DAG 697
Query: 201 GPGAAWLARAP-----LRAAGEIQVSERVEPQGARGSPRGA 236
G + ++ +P + + QV + + P + G+P+G+
Sbjct: 698 GAPQSSMSESPDVNLVTQQLSKSQVEDPLPPVFS-GTPKGS 737
>gi|209529734 mitogen-activated protein kinase 7 isoform 1 [Homo
sapiens]
Length = 816
Score = 33.1 bits (74), Expect = 0.24
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 17/101 (16%)
Query: 142 PPNLPPSPLVIKVLIMTVSRWNCPSPGLPGSRAPG-LPGSRFFALPSLPPPLSVVTSRSG 200
P +P P + + ++ P PGLPGS PG LP + P LPPP +G
Sbjct: 648 PIPVPAPPQIATSTSLLAAQSLVPPPGLPGSSTPGVLP----YFPPGLPPP------DAG 697
Query: 201 GPGAAWLARAP-----LRAAGEIQVSERVEPQGARGSPRGA 236
G + ++ +P + + QV + + P + G+P+G+
Sbjct: 698 GAPQSSMSESPDVNLVTQQLSKSQVEDPLPPVFS-GTPKGS 737
>gi|20986499 mitogen-activated protein kinase 7 isoform 2 [Homo
sapiens]
Length = 677
Score = 33.1 bits (74), Expect = 0.24
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 17/101 (16%)
Query: 142 PPNLPPSPLVIKVLIMTVSRWNCPSPGLPGSRAPG-LPGSRFFALPSLPPPLSVVTSRSG 200
P +P P + + ++ P PGLPGS PG LP + P LPPP +G
Sbjct: 509 PIPVPAPPQIATSTSLLAAQSLVPPPGLPGSSTPGVLP----YFPPGLPPP------DAG 558
Query: 201 GPGAAWLARAP-----LRAAGEIQVSERVEPQGARGSPRGA 236
G + ++ +P + + QV + + P + G+P+G+
Sbjct: 559 GAPQSSMSESPDVNLVTQQLSKSQVEDPLPPVFS-GTPKGS 598
>gi|7662238 apoptotic chromatin condensation inducer 1 [Homo sapiens]
Length = 1341
Score = 32.7 bits (73), Expect = 0.31
Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 12/67 (17%)
Query: 71 AEQDGDEHRRRGEEDRVTGNEVAEPGETRP-----QAPVQNLPQHPRAERAREEGEAHAR 125
AEQD ++ R DR + + E G RP PVQ PQHPRAE+ +E
Sbjct: 1087 AEQDELDYHRGLLVDRPSETKTEEQGIPRPLHPPPPPPVQP-PQHPRAEQREQE------ 1139
Query: 126 RGVAPEW 132
R V +W
Sbjct: 1140 RAVREQW 1146
>gi|149999378 inverted formin 2 isoform 2 [Homo sapiens]
Length = 1240
Score = 32.7 bits (73), Expect = 0.31
Identities = 41/162 (25%), Positives = 59/162 (36%), Gaps = 24/162 (14%)
Query: 30 VLGAVDREEAVNEVALDLGQAVLGRQQVLHALLDLVAAEAGAEQDGDEHRRRGEEDRVTG 89
VL A D +E E ++ +V GR + LV A + + D+ +R T
Sbjct: 323 VLLASDAQECTLEEVVERLLSVKGRPRPS----PLVKAHKSVQANLDQSQRGSSPQNTTT 378
Query: 90 NEVAEPGETRPQAPVQNLPQHPRAERAREEGEAHARRGVAPEWIGAGQLCCTPPNLPPSP 149
+ + G+ A H ++E + + A Q TPP PP P
Sbjct: 379 PKPSVEGQQPAAAAACEPVDHAQSESILKVSQPRALE----------QQASTPPPPPPPP 428
Query: 150 LVIKVLIMTVSRWNCPSPGLPGSRAPGLPGSRFFALPSLPPP 191
L + S P P P P LP ALP+ PPP
Sbjct: 429 L------LPGSSAEPPPPPPP----PPLPSVGAKALPTAPPP 460
>gi|149999380 inverted formin 2 isoform 1 [Homo sapiens]
Length = 1249
Score = 32.7 bits (73), Expect = 0.31
Identities = 41/162 (25%), Positives = 59/162 (36%), Gaps = 24/162 (14%)
Query: 30 VLGAVDREEAVNEVALDLGQAVLGRQQVLHALLDLVAAEAGAEQDGDEHRRRGEEDRVTG 89
VL A D +E E ++ +V GR + LV A + + D+ +R T
Sbjct: 323 VLLASDAQECTLEEVVERLLSVKGRPRPS----PLVKAHKSVQANLDQSQRGSSPQNTTT 378
Query: 90 NEVAEPGETRPQAPVQNLPQHPRAERAREEGEAHARRGVAPEWIGAGQLCCTPPNLPPSP 149
+ + G+ A H ++E + + A Q TPP PP P
Sbjct: 379 PKPSVEGQQPAAAAACEPVDHAQSESILKVSQPRALE----------QQASTPPPPPPPP 428
Query: 150 LVIKVLIMTVSRWNCPSPGLPGSRAPGLPGSRFFALPSLPPP 191
L + S P P P P LP ALP+ PPP
Sbjct: 429 L------LPGSSAEPPPPPPP----PPLPSVGAKALPTAPPP 460
>gi|18959212 GS homeobox 2 [Homo sapiens]
Length = 304
Score = 32.7 bits (73), Expect = 0.31
Identities = 30/103 (29%), Positives = 40/103 (38%), Gaps = 9/103 (8%)
Query: 151 VIKVLIMTVSRWNCPSPGLPGSRAPGLPGSRFFALPSLPPPLSVVTSRSGGPG--AAWLA 208
V ++I SR P+P LP PG FF +PPPL + S G P +
Sbjct: 7 VDSLIIKDTSR---PAPSLPEPH----PGPDFFIPLGMPPPLVMSVSGPGCPSRKSGAFC 59
Query: 209 RAPLRAAGEIQVSERVEPQGARGSPRGADGLAKLGVCVCAPAV 251
PL + S G+ G+ G G GV A A+
Sbjct: 60 VCPLCVTSHLHSSRGSVGAGSGGAGAGVTGAGGSGVAGAAGAL 102
>gi|148727255 microtubule associated serine/threonine kinase family
member 4 isoform a [Homo sapiens]
Length = 2434
Score = 32.7 bits (73), Expect = 0.31
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 142 PPNLPPSPLVIKVLIMTVSRWNCPSPGLPGSRAPGLPGSRFFALPSLPP 190
P ++PP PL K L +R +C SP R PG S A PS P
Sbjct: 1941 PSSIPPPPLTAKDLSSPAARQHCSSPSHASGREPGAKPST--AEPSSSP 1987
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.136 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,602,713
Number of Sequences: 37866
Number of extensions: 764669
Number of successful extensions: 2915
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 176
Number of HSP's that attempted gapping in prelim test: 2661
Number of HSP's gapped (non-prelim): 422
length of query: 252
length of database: 18,247,518
effective HSP length: 100
effective length of query: 152
effective length of database: 14,460,918
effective search space: 2198059536
effective search space used: 2198059536
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.