Guide to the Human Genome
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Search of human proteins with 239752278

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239752278 PREDICTED: hypothetical protein [Homo sapiens]
         (252 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239752278 PREDICTED: hypothetical protein [Homo sapiens]           511   e-145
gi|239746791 PREDICTED: hypothetical protein XP_002343850 [Homo ...   511   e-145
gi|38176300 nestin [Homo sapiens]                                      39   0.006
gi|239741731 PREDICTED: hypothetical protein XP_002342307 [Homo ...    38   0.007
gi|33356148 formin-like 1 [Homo sapiens]                               38   0.010
gi|160707881 formin 2 [Homo sapiens]                                   37   0.021
gi|4758392 forkhead box D1 [Homo sapiens]                              37   0.021
gi|195972805 myocyte enhancer factor 2A isoform 4 [Homo sapiens]       36   0.028
gi|195972803 myocyte enhancer factor 2A isoform 3 [Homo sapiens]       36   0.028
gi|195972801 myocyte enhancer factor 2A isoform 2 [Homo sapiens]       36   0.028
gi|110832843 TBP-associated factor 4 [Homo sapiens]                    36   0.037
gi|32455273 WNK lysine deficient protein kinase 2 [Homo sapiens]       35   0.048
gi|11415052 retinoid X receptor, beta [Homo sapiens]                   35   0.062
gi|5174545 myocyte enhancer factor 2D [Homo sapiens]                   35   0.081
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa...    35   0.081
gi|21704281 junctophilin 2 isoform 1 [Homo sapiens]                    34   0.11 
gi|24308073 protein tyrosine phosphatase, non-receptor type 23 [...    34   0.11 
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]       34   0.14 
gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens]        34   0.14 
gi|195972799 myocyte enhancer factor 2A isoform 1 [Homo sapiens]       33   0.18 
gi|149158690 HLA-B associated transcript-2 [Homo sapiens]              33   0.18 
gi|20986497 mitogen-activated protein kinase 7 isoform 1 [Homo s...    33   0.24 
gi|209529736 mitogen-activated protein kinase 7 isoform 1 [Homo ...    33   0.24 
gi|209529734 mitogen-activated protein kinase 7 isoform 1 [Homo ...    33   0.24 
gi|20986499 mitogen-activated protein kinase 7 isoform 2 [Homo s...    33   0.24 
gi|7662238 apoptotic chromatin condensation inducer 1 [Homo sapi...    33   0.31 
gi|149999378 inverted formin 2 isoform 2 [Homo sapiens]                33   0.31 
gi|149999380 inverted formin 2 isoform 1 [Homo sapiens]                33   0.31 
gi|18959212 GS homeobox 2 [Homo sapiens]                               33   0.31 
gi|148727255 microtubule associated serine/threonine kinase fami...    33   0.31 

>gi|239752278 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 252

 Score =  511 bits (1316), Expect = e-145
 Identities = 252/252 (100%), Positives = 252/252 (100%)

Query: 1   MLVQHVGFLEGGDDDPAVAPGGLQVRVETVLGAVDREEAVNEVALDLGQAVLGRQQVLHA 60
           MLVQHVGFLEGGDDDPAVAPGGLQVRVETVLGAVDREEAVNEVALDLGQAVLGRQQVLHA
Sbjct: 1   MLVQHVGFLEGGDDDPAVAPGGLQVRVETVLGAVDREEAVNEVALDLGQAVLGRQQVLHA 60

Query: 61  LLDLVAAEAGAEQDGDEHRRRGEEDRVTGNEVAEPGETRPQAPVQNLPQHPRAERAREEG 120
           LLDLVAAEAGAEQDGDEHRRRGEEDRVTGNEVAEPGETRPQAPVQNLPQHPRAERAREEG
Sbjct: 61  LLDLVAAEAGAEQDGDEHRRRGEEDRVTGNEVAEPGETRPQAPVQNLPQHPRAERAREEG 120

Query: 121 EAHARRGVAPEWIGAGQLCCTPPNLPPSPLVIKVLIMTVSRWNCPSPGLPGSRAPGLPGS 180
           EAHARRGVAPEWIGAGQLCCTPPNLPPSPLVIKVLIMTVSRWNCPSPGLPGSRAPGLPGS
Sbjct: 121 EAHARRGVAPEWIGAGQLCCTPPNLPPSPLVIKVLIMTVSRWNCPSPGLPGSRAPGLPGS 180

Query: 181 RFFALPSLPPPLSVVTSRSGGPGAAWLARAPLRAAGEIQVSERVEPQGARGSPRGADGLA 240
           RFFALPSLPPPLSVVTSRSGGPGAAWLARAPLRAAGEIQVSERVEPQGARGSPRGADGLA
Sbjct: 181 RFFALPSLPPPLSVVTSRSGGPGAAWLARAPLRAAGEIQVSERVEPQGARGSPRGADGLA 240

Query: 241 KLGVCVCAPAVS 252
           KLGVCVCAPAVS
Sbjct: 241 KLGVCVCAPAVS 252


>gi|239746791 PREDICTED: hypothetical protein XP_002343850 [Homo
           sapiens]
          Length = 252

 Score =  511 bits (1316), Expect = e-145
 Identities = 252/252 (100%), Positives = 252/252 (100%)

Query: 1   MLVQHVGFLEGGDDDPAVAPGGLQVRVETVLGAVDREEAVNEVALDLGQAVLGRQQVLHA 60
           MLVQHVGFLEGGDDDPAVAPGGLQVRVETVLGAVDREEAVNEVALDLGQAVLGRQQVLHA
Sbjct: 1   MLVQHVGFLEGGDDDPAVAPGGLQVRVETVLGAVDREEAVNEVALDLGQAVLGRQQVLHA 60

Query: 61  LLDLVAAEAGAEQDGDEHRRRGEEDRVTGNEVAEPGETRPQAPVQNLPQHPRAERAREEG 120
           LLDLVAAEAGAEQDGDEHRRRGEEDRVTGNEVAEPGETRPQAPVQNLPQHPRAERAREEG
Sbjct: 61  LLDLVAAEAGAEQDGDEHRRRGEEDRVTGNEVAEPGETRPQAPVQNLPQHPRAERAREEG 120

Query: 121 EAHARRGVAPEWIGAGQLCCTPPNLPPSPLVIKVLIMTVSRWNCPSPGLPGSRAPGLPGS 180
           EAHARRGVAPEWIGAGQLCCTPPNLPPSPLVIKVLIMTVSRWNCPSPGLPGSRAPGLPGS
Sbjct: 121 EAHARRGVAPEWIGAGQLCCTPPNLPPSPLVIKVLIMTVSRWNCPSPGLPGSRAPGLPGS 180

Query: 181 RFFALPSLPPPLSVVTSRSGGPGAAWLARAPLRAAGEIQVSERVEPQGARGSPRGADGLA 240
           RFFALPSLPPPLSVVTSRSGGPGAAWLARAPLRAAGEIQVSERVEPQGARGSPRGADGLA
Sbjct: 181 RFFALPSLPPPLSVVTSRSGGPGAAWLARAPLRAAGEIQVSERVEPQGARGSPRGADGLA 240

Query: 241 KLGVCVCAPAVS 252
           KLGVCVCAPAVS
Sbjct: 241 KLGVCVCAPAVS 252


>gi|38176300 nestin [Homo sapiens]
          Length = 1621

 Score = 38.5 bits (88), Expect = 0.006
 Identities = 54/152 (35%), Positives = 69/152 (45%), Gaps = 28/152 (18%)

Query: 13   DDDPAVAPGGLQVRVETVLGAVDREEAVNEVALDL----GQAV--------LGRQQVLHA 60
            +DD  VAPGG Q   E +LG+   E A+ E A       GQ V        L R++V+  
Sbjct: 1068 EDD--VAPGGDQASPEVMLGS---EPAMGESAAGAEPGPGQGVGGLGDPGHLTREEVMEP 1122

Query: 61   LLDLVAAEAGAEQDGDEHRRRGEEDRVTGNEVAE-PGETRPQAPVQNLPQHPRAERAREE 119
             L+  + EA   Q  +  R+  EE    G E +E PG++R        P  P  E  REE
Sbjct: 1123 PLEEESLEAKRVQGLEGPRKDLEEAGGLGTEFSELPGKSRD-------PWEPPRE-GREE 1174

Query: 120  GEAHARRGVAPEWIGAGQLCCTPPNLP-PSPL 150
             EA A RG A E   A  L  T  + P P PL
Sbjct: 1175 SEAEAPRG-AEEAFPAETLGHTGSDAPSPWPL 1205


>gi|239741731 PREDICTED: hypothetical protein XP_002342307 [Homo
           sapiens]
          Length = 316

 Score = 38.1 bits (87), Expect = 0.007
 Identities = 37/124 (29%), Positives = 50/124 (40%), Gaps = 18/124 (14%)

Query: 141 TPPNLPPSPLVIKVLIMTVSRWNCPSPGLPGSRAPGLPGSRFFALPSLPPPLSVVTSR-- 198
           T P LPP+ L      + V  +  P P  P SR PG   +R      LPPPL +  SR  
Sbjct: 179 TVPGLPPASLQP----LRVPYFAPPGPHDPTSRGPGRLLTREPPSRKLPPPLPLCRSRWV 234

Query: 199 ------SGGPGAAWLARAPLRAAGEIQVSERVEPQGARGSP-----RGADGLAKLGVCVC 247
                    PG    A  PLR     ++ + V+P+   G P      G    ++L  C  
Sbjct: 235 LAPPPPPAPPGPNAAAHPPLRPP-RARLQDPVDPERCPGGPSRGPGHGTHAHSELPTCTR 293

Query: 248 APAV 251
            P+V
Sbjct: 294 LPSV 297


>gi|33356148 formin-like 1 [Homo sapiens]
          Length = 1100

 Score = 37.7 bits (86), Expect = 0.010
 Identities = 48/191 (25%), Positives = 72/191 (37%), Gaps = 29/191 (15%)

Query: 37  EEAVNEVALDLGQAVLGRQQVLHALLDLVAAEAGAEQDGDEHRRRGEEDRVTG--NEVAE 94
           EE   +VAL   +      + +  + +L    + A ++ +  R R  E    G      E
Sbjct: 402 EELQEQVALLTERLRDAENESMAKIAELEKQLSQARKELETLRERFSESTAMGASRRPPE 461

Query: 95  PGETRPQAPVQNLPQHPRAERAREEGEAHARRGVAPEWIGAGQLCCTPPNLPPSPLVIKV 154
           P +  P AP +      + E   E+G     RG               P    S  ++ V
Sbjct: 462 PEKAPPAAPTRPSALELKVEELEEKGLIRILRG---------------PGDAVSIEILPV 506

Query: 155 LIMTVSRWNCPSPGLP-GSRAPGL-------PGSRFFALPSLPPPLSVVTSRSGGPGAAW 206
            + T S  + P+PG+P GS +P L       PG    A P  PPPL  + S    P +A 
Sbjct: 507 AVATPSGGDAPTPGVPTGSPSPDLAPAAEPAPG----AAPPPPPPLPGLPSPQEAPPSAP 562

Query: 207 LARAPLRAAGE 217
               PL  + E
Sbjct: 563 PQAPPLPGSPE 573


>gi|160707881 formin 2 [Homo sapiens]
          Length = 1722

 Score = 36.6 bits (83), Expect = 0.021
 Identities = 29/75 (38%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 165 PSPG-LPGSRAPGLPGSRFFALPSLPPPLSVVTSRSGGPGAAWLARAPLRAAGEIQVSER 223
           PSPG LP S AP LP ++  A  S  P  +       GPG    A AP+R AG+    E 
Sbjct: 294 PSPGGLPVSEAPSLPAAQPAAKDS--PSSTAFPFPEAGPGEE-AAGAPVRGAGD--TDEE 348

Query: 224 VEPQGARGSPRGADG 238
            E      +PRG+ G
Sbjct: 349 GEEDAFEDAPRGSPG 363



 Score = 30.0 bits (66), Expect = 2.0
 Identities = 28/86 (32%), Positives = 33/86 (38%), Gaps = 19/86 (22%)

Query: 141 TPPNLPPSPLVIKVLIMTVSRWNCPSPGLPGSRAPG---LPGSRFFALPSL-------PP 190
           T P LP + +     +        P P LPG+  P    LPG+    LP L       PP
Sbjct: 887 TVPTLPSTAIPQPPPLQGTEMLPPPPPPLPGAGIPPPPPLPGAGILPLPPLPGAGIPPPP 946

Query: 191 PLSVVTSRSGGPGAAWLARAPLRAAG 216
           PL         PGAA     PL  AG
Sbjct: 947 PL---------PGAAIPPPPPLPGAG 963



 Score = 29.3 bits (64), Expect = 3.4
 Identities = 28/89 (31%), Positives = 33/89 (37%), Gaps = 12/89 (13%)

Query: 140 CTPPNLPPSPLVIKVLIMT-VSRWNCPSPGLPGSRAPGLPGSRF---------FALPSLP 189
           C  P+ PP P       M  +     P P LPG   P LP +             LP  P
Sbjct: 853 CNIPSPPPLPCTESSSSMPGLGMVPPPPPPLPGMTVPTLPSTAIPQPPPLQGTEMLPPPP 912

Query: 190 PPL--SVVTSRSGGPGAAWLARAPLRAAG 216
           PPL  + +      PGA  L   PL  AG
Sbjct: 913 PPLPGAGIPPPPPLPGAGILPLPPLPGAG 941



 Score = 27.7 bits (60), Expect = 9.9
 Identities = 37/122 (30%), Positives = 41/122 (33%), Gaps = 20/122 (16%)

Query: 95  PGETRPQAPVQNLPQHPRAERAREEGEAHARRGVAPEWIGAGQLCCTPPNLPPSPLVIKV 154
           PG T P  P   +PQ P  +               P   GAG     PP  P     I  
Sbjct: 884 PGMTVPTLPSTAIPQPPPLQGTEMLPPP------PPPLPGAG----IPPPPPLPGAGILP 933

Query: 155 LIMTVSRWNCPSPGLPGSRAPGLPGSRFFALPSLPPPLSVVTSRSGGPGAAWLARAPLRA 214
           L         P P LPG+  P  P      +P LPPPL         PGA      PL  
Sbjct: 934 LPPLPGAGIPPPPPLPGAAIPPPPPLPGAGIP-LPPPL---------PGAGIPPPPPLPG 983

Query: 215 AG 216
           AG
Sbjct: 984 AG 985


>gi|4758392 forkhead box D1 [Homo sapiens]
          Length = 465

 Score = 36.6 bits (83), Expect = 0.021
 Identities = 28/87 (32%), Positives = 37/87 (42%), Gaps = 9/87 (10%)

Query: 134 GAGQLCCTPPNLPPSPLVIKVLIMTVSR----WNCPSPGLPGSRAPGLPGSRFFALP--- 186
           G G     PP  PPS L         +      + P P  P   A  L  + F   P   
Sbjct: 275 GCGYGLQLPPYAPPSALFAAAAAAAAAAAFHPHSPPPPPPPHGAAAELARTAFGYRPHPL 334

Query: 187 --SLPPPLSVVTSRSGGPGAAWLARAP 211
             +LP PL    +++GGPGA+ LAR+P
Sbjct: 335 GAALPGPLPASAAKAGGPGASALARSP 361


>gi|195972805 myocyte enhancer factor 2A isoform 4 [Homo sapiens]
          Length = 429

 Score = 36.2 bits (82), Expect = 0.028
 Identities = 29/96 (30%), Positives = 38/96 (39%), Gaps = 3/96 (3%)

Query: 142 PPNLPPSPLVIKVLIMTVSRWNCPSPGLPGSR--APGLPGSRFFALPSLPPPLSVVTSRS 199
           PP LPP    + V +   S  N  S   PGS   +P L  S      S+  P      R+
Sbjct: 62  PPGLPPQNFSMSVTVPVTSP-NALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRN 120

Query: 200 GGPGAAWLARAPLRAAGEIQVSERVEPQGARGSPRG 235
             PGA     +   A G +  ++   P GA  SP G
Sbjct: 121 VSPGAPQRPPSTGNAGGMLSTTDLTVPNGAGSSPVG 156


>gi|195972803 myocyte enhancer factor 2A isoform 3 [Homo sapiens]
          Length = 437

 Score = 36.2 bits (82), Expect = 0.028
 Identities = 29/96 (30%), Positives = 38/96 (39%), Gaps = 3/96 (3%)

Query: 142 PPNLPPSPLVIKVLIMTVSRWNCPSPGLPGSR--APGLPGSRFFALPSLPPPLSVVTSRS 199
           PP LPP    + V +   S  N  S   PGS   +P L  S      S+  P      R+
Sbjct: 62  PPGLPPQNFSMSVTVPVTSP-NALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRN 120

Query: 200 GGPGAAWLARAPLRAAGEIQVSERVEPQGARGSPRG 235
             PGA     +   A G +  ++   P GA  SP G
Sbjct: 121 VSPGAPQRPPSTGNAGGMLSTTDLTVPNGAGSSPVG 156


>gi|195972801 myocyte enhancer factor 2A isoform 2 [Homo sapiens]
          Length = 497

 Score = 36.2 bits (82), Expect = 0.028
 Identities = 29/96 (30%), Positives = 38/96 (39%), Gaps = 3/96 (3%)

Query: 142 PPNLPPSPLVIKVLIMTVSRWNCPSPGLPGSR--APGLPGSRFFALPSLPPPLSVVTSRS 199
           PP LPP    + V +   S  N  S   PGS   +P L  S      S+  P      R+
Sbjct: 130 PPGLPPQNFSMSVTVPVTSP-NALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRN 188

Query: 200 GGPGAAWLARAPLRAAGEIQVSERVEPQGARGSPRG 235
             PGA     +   A G +  ++   P GA  SP G
Sbjct: 189 VSPGAPQRPPSTGNAGGMLSTTDLTVPNGAGSSPVG 224


>gi|110832843 TBP-associated factor 4 [Homo sapiens]
          Length = 1085

 Score = 35.8 bits (81), Expect = 0.037
 Identities = 37/130 (28%), Positives = 44/130 (33%), Gaps = 28/130 (21%)

Query: 130 PEWIGAGQLCCTPPNL----PPSPLVIKVLIMTVSRWNCPSPGLPGSRAPGLPGSRFFAL 185
           P+    G +  TPP +    PP+P               PSP  P + AP  P     A 
Sbjct: 229 PKPAAPGTVIQTPPFVGAAAPPAPAA-------------PSP--PAAPAPAAPA----AA 269

Query: 186 PSLPPPLSVVTSR-----SGGPGAAWLARAPLRAAGEIQVSERVEPQGARGSPRGADGLA 240
           P  PPP     +R     +G P AA     P  A           P  A G P G  G  
Sbjct: 270 PPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQP 329

Query: 241 KLGVCVCAPA 250
             G    APA
Sbjct: 330 GPGAAAAAPA 339


>gi|32455273 WNK lysine deficient protein kinase 2 [Homo sapiens]
          Length = 2217

 Score = 35.4 bits (80), Expect = 0.048
 Identities = 39/169 (23%), Positives = 64/169 (37%), Gaps = 32/169 (18%)

Query: 87   VTGNEVAEPGETRPQAPVQNLPQHPRAERAREEGEAHARRGVAPEWIGAGQLCC-----T 141
            V  +   E  E+ P  P+ +LP     + A  + +  ++    P ++ + QL        
Sbjct: 1318 VAEHPAPEAPESSPPLPLSSLPPEASQDSAPYKDQLSSKE--QPSFLASQQLLSQAGPSN 1375

Query: 142  PPNLPPSPLVIKVLIMTVSRWNCPSPGLPGSRAPGLPGSRFFALPSLPPPLSVVTSRSGG 201
            PP  PP+PL            + P   LP   A         A  ++P P S   S++GG
Sbjct: 1376 PPGAPPAPLAPS---------SPPVTALPQDGAAP-------ATSTMPEPASGTASQAGG 1419

Query: 202  PGAAWLARAPLRAAGEIQVSERVEPQGARGSPRGADGLAKLGVCVCAPA 250
            PG       P     E++ S+ +       +P     L  +G+  C PA
Sbjct: 1420 PG------TPQGLTSELETSQPLAE--THEAPLAVQPLV-VGLAPCTPA 1459


>gi|11415052 retinoid X receptor, beta [Homo sapiens]
          Length = 533

 Score = 35.0 bits (79), Expect = 0.062
 Identities = 28/78 (35%), Positives = 35/78 (44%), Gaps = 11/78 (14%)

Query: 165 PSPGLPGSRAPGLPGSRFFALPSLPP-----PLSVVTSRSGGPGAAWLARAPLRAAGEI- 218
           P P LP S AP L GS     P +PP     P  V++S  G PG      AP   +G + 
Sbjct: 101 PGPPLPPSTAPSLGGSGAPPPPPMPPPPLGSPFPVISSSMGSPGLP--PPAPPGFSGPVS 158

Query: 219 --QVSERVE-PQGARGSP 233
             Q++  V  P G  G P
Sbjct: 159 SPQINSTVSLPGGGSGPP 176


>gi|5174545 myocyte enhancer factor 2D [Homo sapiens]
          Length = 521

 Score = 34.7 bits (78), Expect = 0.081
 Identities = 30/119 (25%), Positives = 45/119 (37%), Gaps = 19/119 (15%)

Query: 90  NEVAEPGETRPQAPV-------QNLPQHPRAERAREEGEAHARRGVAPEWIGAGQLCC-T 141
           + + +P    PQ P          LPQ P +  A   G+ ++  G  P  +G G +    
Sbjct: 171 SSLTDPRLLSPQQPALQRNSVSPGLPQRPASAGAMLGGDLNSANGACPSPVGNGYVSARA 230

Query: 142 PPNLPPSPLVIKVLIMTVSRWNCPSPGLPGSRAPGLPGSRFFALPSLPPPLSVVTSRSG 200
            P L P           V+  N  +  +P    P    S     PS  P L V+TS++G
Sbjct: 231 SPGLLP-----------VANGNSLNKVIPAKSPPPPTHSTQLGAPSRKPDLRVITSQAG 278


>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
           sapiens]
          Length = 2715

 Score = 34.7 bits (78), Expect = 0.081
 Identities = 36/129 (27%), Positives = 46/129 (35%), Gaps = 16/129 (12%)

Query: 114 ERAREEGEAHARRGVAPEWIGAGQL----CCTPPNLPPSPLVIKVLIMTVSRWN---CPS 166
           E   +EGE    R VA E + A +        PP  PP+P     L    +      CP 
Sbjct: 372 EEKDKEGEEKEERAVAEEMMPAAEKEEAKLPPPPLTPPAPSPPPPLPPPSTSPPPPLCPP 431

Query: 167 PGLPGSRAPGLPGSRFFALPSLPPPLSVVTSRSGGPGAAWLARAPLRAAGEIQVSERVEP 226
           P  P S  P         LPS PPP +        P       +  R    +  S+R E 
Sbjct: 432 PPPPVSPPP---------LPSPPPPPAQEEQEESPPPVVPATCSRKRGRPPLTPSQRAER 482

Query: 227 QGARGSPRG 235
           + AR  P G
Sbjct: 483 EAARAGPEG 491



 Score = 33.9 bits (76), Expect = 0.14
 Identities = 40/135 (29%), Positives = 53/135 (39%), Gaps = 19/135 (14%)

Query: 82   GEEDRVTGNEVAEPGETRPQAPVQNL-----PQHPRAERAREEGEAHARRGV---APEWI 133
            G ED     +V  PG     +P+QNL     P    A        + AR  V   +P   
Sbjct: 1816 GGEDPPLDTDVLVPGAPERHSPIQNLDPPLRPDSGSAPPPAPRSFSGARIKVPNYSPSRR 1875

Query: 134  GAGQLCCTPPNLPPSPLVIKVLIMTVSRWNCPSP----GLPGSRAPGLPGSRFFALP--- 186
              G +   P   P SP  +   I TV   + P+P      P   AP  P SR+ + P   
Sbjct: 1876 PLGGVSFGPLPSPGSPSSLTHHIPTVGDPDFPAPPRRSRRPSPLAPRPPPSRWASPPLKT 1935

Query: 187  ----SLPPPLSVVTS 197
                 +PPP SVVT+
Sbjct: 1936 SPQLRVPPPTSVVTA 1950


>gi|21704281 junctophilin 2 isoform 1 [Homo sapiens]
          Length = 696

 Score = 34.3 bits (77), Expect = 0.11
 Identities = 48/195 (24%), Positives = 71/195 (36%), Gaps = 25/195 (12%)

Query: 9   LEGGDDDPAVAPGGLQVRVETVLGAVDREEAVNEVALDLGQAVLGRQQVLHALLDLVAAE 68
           +EG     A+A    ++       A  + EA  + AL   Q       +   L   +A +
Sbjct: 370 VEGAQRAAAIARQKAEIAASRTSHAKAKAEAAEQAALAANQ----ESNIARTLARELAPD 425

Query: 69  AGAEQDGDEHRRRGEEDRVTGNEVAEPGETRPQAPVQNLPQHPRAERAREEGEAHARRGV 128
               Q G E+++R     +  N  +        A    LPQ PR     E  + H R   
Sbjct: 426 F--YQPGPEYQKRRLLQEILENSESLLEPPDRGAGAAGLPQPPR-----ESPQLHERETP 478

Query: 129 APEWIGAGQLCCTPPN-LPPSPLVIKVLIMTVSRWN-----------CPSPGLPGSRAPG 176
            PE  G+     TPP    P P V K  +++   WN            PS G  G R+P 
Sbjct: 479 RPEG-GSPSPAGTPPQPKRPRPGVSKDGLLSPGAWNGEPSGEGSRSVTPSEG-AGRRSPA 536

Query: 177 LPGSRFFALPSLPPP 191
            P +   A+ +L  P
Sbjct: 537 RPATERMAIEALQAP 551


>gi|24308073 protein tyrosine phosphatase, non-receptor type 23
           [Homo sapiens]
          Length = 1636

 Score = 34.3 bits (77), Expect = 0.11
 Identities = 36/137 (26%), Positives = 55/137 (40%), Gaps = 22/137 (16%)

Query: 80  RRGEEDRVTGNEVAEPGETRPQAPVQNLPQHPRAERAREEGEAHARRGVAPEWIGAGQLC 139
           R     ++   E+ +    RP AP   LP+       REE EA    G  PE     +L 
Sbjct: 700 REAARQQLLDRELKKKPPPRPTAPKPLLPR-------REESEA-VEAGDPPE-----ELR 746

Query: 140 CTPPNLPPSPLVIKVLIMTVSRWNCPSPGLPGSRAPGLPGSRFFALPSLPP-----PLSV 194
             PP++   P +    + + +  + P    P S     PG  + + P LPP     P  +
Sbjct: 747 SLPPDMVAGPRLPDTFLGSATPLHFPPSPFPSSTG---PGPHYLSGP-LPPGTYSGPTQL 802

Query: 195 VTSRSGGPGAAWLARAP 211
           +  R+ GP A  +A  P
Sbjct: 803 IQPRAPGPHAMPVAPGP 819


>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
          Length = 1838

 Score = 33.9 bits (76), Expect = 0.14
 Identities = 30/86 (34%), Positives = 35/86 (40%), Gaps = 18/86 (20%)

Query: 165  PSP-GLPGSRAP----GLPGSRFFALPSLPPPLSVVTSRSG-------GPGAAWLARAPL 212
            P P GLPG   P    G PG R      LP P+  +  +         GP  +   R P 
Sbjct: 1041 PGPAGLPGKDGPPGLRGFPGDR-----GLPGPVGALGLKGNEGPPGPPGPAGSPGERGPA 1095

Query: 213  RAAGEIQVSERVEPQGARGSPRGADG 238
             AAG I +  R  PQG  G P G  G
Sbjct: 1096 GAAGPIGIPGRPGPQGPPG-PAGEKG 1120


>gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens]
          Length = 380

 Score = 33.9 bits (76), Expect = 0.14
 Identities = 39/144 (27%), Positives = 49/144 (34%), Gaps = 17/144 (11%)

Query: 95  PGETRPQAPVQNLPQHPRAERAREEGEAHARRGVAPEWIGAGQLCCTPPNLPPSPLVIKV 154
           P    P+   Q   Q P      E   ++A    AP   G       PP  PP P     
Sbjct: 130 PNGPSPEEVEQQKRQQPGPSEHIERRVSNAGGPPAPPAGGPPP----PPGPPPPP----- 180

Query: 155 LIMTVSRWNCPSPGLPGSRAPGLPGSRFFALPSLPPPLSVVTSRSGGPGAAWLARAPLRA 214
                     P PGLP S  P          P  PP  +      GG GA  LA A +  
Sbjct: 181 -------GPPPPPGLPPSGVPAAAHGAGGGPPPAPPLPAAQGPGGGGAGAPGLA-AAIAG 232

Query: 215 AGEIQVSERVEPQGARGSPRGADG 238
           A   +VS++ E  G   +P+   G
Sbjct: 233 AKLRKVSKQEEASGGPTAPKAESG 256


>gi|195972799 myocyte enhancer factor 2A isoform 1 [Homo sapiens]
          Length = 499

 Score = 33.5 bits (75), Expect = 0.18
 Identities = 28/95 (29%), Positives = 37/95 (38%), Gaps = 3/95 (3%)

Query: 143 PNLPPSPLVIKVLIMTVSRWNCPSPGLPGSR--APGLPGSRFFALPSLPPPLSVVTSRSG 200
           P LPP    + V +   S  N  S   PGS   +P L  S      S+  P      R+ 
Sbjct: 133 PGLPPQNFSMSVTVPVTSP-NALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRNV 191

Query: 201 GPGAAWLARAPLRAAGEIQVSERVEPQGARGSPRG 235
            PGA     +   A G +  ++   P GA  SP G
Sbjct: 192 SPGAPQRPPSTGNAGGMLSTTDLTVPNGAGSSPVG 226


>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
          Length = 2157

 Score = 33.5 bits (75), Expect = 0.18
 Identities = 40/136 (29%), Positives = 48/136 (35%), Gaps = 27/136 (19%)

Query: 108  PQHPRAERAREEG----EAHARRGVAPEWIGAGQLCCTPPNLPPSPLVIKVLIMTVSRWN 163
            P  PR E   E         +RRG+ PE  GA      P   PP P  ++ L        
Sbjct: 913  PPPPRRESRTETRWGPRPGSSRRGIPPEEPGAPPRRAGPIKKPPPPTKVEEL-------- 964

Query: 164  CPSPGLPGSRAPGLPGSRFFALPSLPPPLSVVTSRSGGPGA----AWLARAPLRAAGEIQ 219
             P P   G   P          P  P PL +   + GGP        L+ AP R   +  
Sbjct: 965  PPKPLEQGDETP---------KPPKPDPLKITKGKLGGPKETPPNGNLSPAP-RLRRDYS 1014

Query: 220  VSERVEPQGARGSPRG 235
              ERV P   RG  RG
Sbjct: 1015 Y-ERVGPTSCRGRGRG 1029



 Score = 27.7 bits (60), Expect = 9.9
 Identities = 27/99 (27%), Positives = 38/99 (38%), Gaps = 22/99 (22%)

Query: 141 TPPNLPPSPLVIKVLIMTVSRWNCPSPGLPGSRAPGLPGSRFFALPSLPPPLSVVTSRSG 200
           TPP  PP P +               PG P + APG P SRF      P PL        
Sbjct: 825 TPPVPPPPPYLASY------------PGFPENGAPGPPISRFPLEEPGPRPL------PW 866

Query: 201 GPGAAWLAR----APLRAAGEIQVSERVEPQGARGSPRG 235
            PG+  +A+     P +   + + ++   P+  R   RG
Sbjct: 867 PPGSDEVAKIQTPPPKKEPPKEETAQLTGPEAGRKPARG 905


>gi|20986497 mitogen-activated protein kinase 7 isoform 1 [Homo
           sapiens]
          Length = 816

 Score = 33.1 bits (74), Expect = 0.24
 Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 17/101 (16%)

Query: 142 PPNLPPSPLVIKVLIMTVSRWNCPSPGLPGSRAPG-LPGSRFFALPSLPPPLSVVTSRSG 200
           P  +P  P +     +  ++   P PGLPGS  PG LP    +  P LPPP       +G
Sbjct: 648 PIPVPAPPQIATSTSLLAAQSLVPPPGLPGSSTPGVLP----YFPPGLPPP------DAG 697

Query: 201 GPGAAWLARAP-----LRAAGEIQVSERVEPQGARGSPRGA 236
           G   + ++ +P      +   + QV + + P  + G+P+G+
Sbjct: 698 GAPQSSMSESPDVNLVTQQLSKSQVEDPLPPVFS-GTPKGS 737


>gi|209529736 mitogen-activated protein kinase 7 isoform 1 [Homo
           sapiens]
          Length = 816

 Score = 33.1 bits (74), Expect = 0.24
 Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 17/101 (16%)

Query: 142 PPNLPPSPLVIKVLIMTVSRWNCPSPGLPGSRAPG-LPGSRFFALPSLPPPLSVVTSRSG 200
           P  +P  P +     +  ++   P PGLPGS  PG LP    +  P LPPP       +G
Sbjct: 648 PIPVPAPPQIATSTSLLAAQSLVPPPGLPGSSTPGVLP----YFPPGLPPP------DAG 697

Query: 201 GPGAAWLARAP-----LRAAGEIQVSERVEPQGARGSPRGA 236
           G   + ++ +P      +   + QV + + P  + G+P+G+
Sbjct: 698 GAPQSSMSESPDVNLVTQQLSKSQVEDPLPPVFS-GTPKGS 737


>gi|209529734 mitogen-activated protein kinase 7 isoform 1 [Homo
           sapiens]
          Length = 816

 Score = 33.1 bits (74), Expect = 0.24
 Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 17/101 (16%)

Query: 142 PPNLPPSPLVIKVLIMTVSRWNCPSPGLPGSRAPG-LPGSRFFALPSLPPPLSVVTSRSG 200
           P  +P  P +     +  ++   P PGLPGS  PG LP    +  P LPPP       +G
Sbjct: 648 PIPVPAPPQIATSTSLLAAQSLVPPPGLPGSSTPGVLP----YFPPGLPPP------DAG 697

Query: 201 GPGAAWLARAP-----LRAAGEIQVSERVEPQGARGSPRGA 236
           G   + ++ +P      +   + QV + + P  + G+P+G+
Sbjct: 698 GAPQSSMSESPDVNLVTQQLSKSQVEDPLPPVFS-GTPKGS 737


>gi|20986499 mitogen-activated protein kinase 7 isoform 2 [Homo
           sapiens]
          Length = 677

 Score = 33.1 bits (74), Expect = 0.24
 Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 17/101 (16%)

Query: 142 PPNLPPSPLVIKVLIMTVSRWNCPSPGLPGSRAPG-LPGSRFFALPSLPPPLSVVTSRSG 200
           P  +P  P +     +  ++   P PGLPGS  PG LP    +  P LPPP       +G
Sbjct: 509 PIPVPAPPQIATSTSLLAAQSLVPPPGLPGSSTPGVLP----YFPPGLPPP------DAG 558

Query: 201 GPGAAWLARAP-----LRAAGEIQVSERVEPQGARGSPRGA 236
           G   + ++ +P      +   + QV + + P  + G+P+G+
Sbjct: 559 GAPQSSMSESPDVNLVTQQLSKSQVEDPLPPVFS-GTPKGS 598


>gi|7662238 apoptotic chromatin condensation inducer 1 [Homo sapiens]
          Length = 1341

 Score = 32.7 bits (73), Expect = 0.31
 Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 12/67 (17%)

Query: 71   AEQDGDEHRRRGEEDRVTGNEVAEPGETRP-----QAPVQNLPQHPRAERAREEGEAHAR 125
            AEQD  ++ R    DR +  +  E G  RP       PVQ  PQHPRAE+  +E      
Sbjct: 1087 AEQDELDYHRGLLVDRPSETKTEEQGIPRPLHPPPPPPVQP-PQHPRAEQREQE------ 1139

Query: 126  RGVAPEW 132
            R V  +W
Sbjct: 1140 RAVREQW 1146


>gi|149999378 inverted formin 2 isoform 2 [Homo sapiens]
          Length = 1240

 Score = 32.7 bits (73), Expect = 0.31
 Identities = 41/162 (25%), Positives = 59/162 (36%), Gaps = 24/162 (14%)

Query: 30  VLGAVDREEAVNEVALDLGQAVLGRQQVLHALLDLVAAEAGAEQDGDEHRRRGEEDRVTG 89
           VL A D +E   E  ++   +V GR +       LV A    + + D+ +R       T 
Sbjct: 323 VLLASDAQECTLEEVVERLLSVKGRPRPS----PLVKAHKSVQANLDQSQRGSSPQNTTT 378

Query: 90  NEVAEPGETRPQAPVQNLPQHPRAERAREEGEAHARRGVAPEWIGAGQLCCTPPNLPPSP 149
            + +  G+    A       H ++E   +  +  A            Q   TPP  PP P
Sbjct: 379 PKPSVEGQQPAAAAACEPVDHAQSESILKVSQPRALE----------QQASTPPPPPPPP 428

Query: 150 LVIKVLIMTVSRWNCPSPGLPGSRAPGLPGSRFFALPSLPPP 191
           L      +  S    P P  P    P LP     ALP+ PPP
Sbjct: 429 L------LPGSSAEPPPPPPP----PPLPSVGAKALPTAPPP 460


>gi|149999380 inverted formin 2 isoform 1 [Homo sapiens]
          Length = 1249

 Score = 32.7 bits (73), Expect = 0.31
 Identities = 41/162 (25%), Positives = 59/162 (36%), Gaps = 24/162 (14%)

Query: 30  VLGAVDREEAVNEVALDLGQAVLGRQQVLHALLDLVAAEAGAEQDGDEHRRRGEEDRVTG 89
           VL A D +E   E  ++   +V GR +       LV A    + + D+ +R       T 
Sbjct: 323 VLLASDAQECTLEEVVERLLSVKGRPRPS----PLVKAHKSVQANLDQSQRGSSPQNTTT 378

Query: 90  NEVAEPGETRPQAPVQNLPQHPRAERAREEGEAHARRGVAPEWIGAGQLCCTPPNLPPSP 149
            + +  G+    A       H ++E   +  +  A            Q   TPP  PP P
Sbjct: 379 PKPSVEGQQPAAAAACEPVDHAQSESILKVSQPRALE----------QQASTPPPPPPPP 428

Query: 150 LVIKVLIMTVSRWNCPSPGLPGSRAPGLPGSRFFALPSLPPP 191
           L      +  S    P P  P    P LP     ALP+ PPP
Sbjct: 429 L------LPGSSAEPPPPPPP----PPLPSVGAKALPTAPPP 460


>gi|18959212 GS homeobox 2 [Homo sapiens]
          Length = 304

 Score = 32.7 bits (73), Expect = 0.31
 Identities = 30/103 (29%), Positives = 40/103 (38%), Gaps = 9/103 (8%)

Query: 151 VIKVLIMTVSRWNCPSPGLPGSRAPGLPGSRFFALPSLPPPLSVVTSRSGGPG--AAWLA 208
           V  ++I   SR   P+P LP       PG  FF    +PPPL +  S  G P   +    
Sbjct: 7   VDSLIIKDTSR---PAPSLPEPH----PGPDFFIPLGMPPPLVMSVSGPGCPSRKSGAFC 59

Query: 209 RAPLRAAGEIQVSERVEPQGARGSPRGADGLAKLGVCVCAPAV 251
             PL     +  S      G+ G+  G  G    GV   A A+
Sbjct: 60  VCPLCVTSHLHSSRGSVGAGSGGAGAGVTGAGGSGVAGAAGAL 102


>gi|148727255 microtubule associated serine/threonine kinase family
            member 4 isoform a [Homo sapiens]
          Length = 2434

 Score = 32.7 bits (73), Expect = 0.31
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 142  PPNLPPSPLVIKVLIMTVSRWNCPSPGLPGSRAPGLPGSRFFALPSLPP 190
            P ++PP PL  K L    +R +C SP     R PG   S   A PS  P
Sbjct: 1941 PSSIPPPPLTAKDLSSPAARQHCSSPSHASGREPGAKPST--AEPSSSP 1987


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.136    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,602,713
Number of Sequences: 37866
Number of extensions: 764669
Number of successful extensions: 2915
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 176
Number of HSP's that attempted gapping in prelim test: 2661
Number of HSP's gapped (non-prelim): 422
length of query: 252
length of database: 18,247,518
effective HSP length: 100
effective length of query: 152
effective length of database: 14,460,918
effective search space: 2198059536
effective search space used: 2198059536
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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